CmoCh11G020610 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G020610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Nucleolar complex protein 3-like protein
Location	Cmo_Chr11: 13958402 .. 13959162 (+)
RNA-Seq Expression	CmoCh11G020610
Synteny	CmoCh11G020610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTCTTTTTCTTCCCGCCATCTCCTCCTCCGTTTCAGCAGCTCAGTAGCCCGCCGTCTTCTTTCTTCTATGCCGCTGCCCCCTCCCTCTGTAATCTTTAACCACTCGAAGGAGGCTTTCATTCTGTCTTCTCCATGCGGTAGATACGTAATAACGAGAAACAGAAGCTAATTCTACCGCCGGAGTTTCCACCAGAGCTCACCGATGAAGAAGTTGAGGTCTCCGAAGGGGAAGAAGTTGACGTCTCAGAAGGTAATTCTATCTTTTTCTGTTTTTATTTAAGCTATTTTTGTTTCGTTTGTCTTAGTTGCATCATTTGTTAATTACTCTGCTATGGAATGCATATACAGTTACTGGATTAGGCTTCCAACAGCAAAGGAGCTAGAAATGGAAGTATCCAAGGGTGTTCAGAAAATGCGGAGCTACGGGTCTACTCTTCTCATTGCTTATAAGGTTTGTGCTCCTATTTTTATTTATCTTTCCATGAGGTTTTCTGGTGCTTGAAATGGAATGAAGTTACTTAGCAAAGCAATTTCTGAAATAAAGATCAGTTCAAACCATCACAATCCTACCTTGCTTCGATGAAGTTATTTGGTATGCGATTAGATCTTAGTATGATATTATTAGTCTTTCAATTGATGGATTGGGTTTCTAACAATTGATAATTTATGCTTTCACAGTGTAGACTGAAACTTCTTGGTTTTTTGCAATGCATAACTGGGGATCTAGATGCCTTATTTGTTAAGAGGATCTCCTTTTAG

mRNA sequence

CCTTCTTTTTCTTCCCGCCATCTCCTCCTCCGTTTCAGCAGCTCAGTAGCCCGCCGTCTTCTTTCTTCTATGCCGCTGCCCCCTCCCTCTGTAATCTTTAACCACTCGAAGGAGGCTTTCATTCTGTCTTCTCCATGCGGTAGATACGTAATAACGAGAAACAGAAGCTAATTCTACCGCCGGAGTTTCCACCAGAGCTCACCGATGAAGAAGTTGAGGTCTCCGAAGGGGAAGAAGTTGACGTCTCAGAAGTTGCATCATTTGTTAATTACTCTGCTATGGAATGCATATACAGTTACTGGATTAGGCTTCCAACAGCAAAGGAGCTAGAAATGGAAGTATCCAAGGGTGTTCAGAAAATGCGGAGCTACGGGTCTACTCTTCTCATTGCTTATAAGTGTAGACTGAAACTTCTTGGTTTTTTGCAATGCATAACTGGGGATCTAGATGCCTTATTTGTTAAGAGGATCTCCTTTTAG

Coding sequence (CDS)

ATGGAATGCATATACAGTTACTGGATTAGGCTTCCAACAGCAAAGGAGCTAGAAATGGAAGTATCCAAGGGTGTTCAGAAAATGCGGAGCTACGGGTCTACTCTTCTCATTGCTTATAAGTGTAGACTGAAACTTCTTGGTTTTTTGCAATGCATAACTGGGGATCTAGATGCCTTATTTGTTAAGAGGATCTCCTTTTAG

Protein sequence

MECIYSYWIRLPTAKELEMEVSKGVQKMRSYGSTLLIAYKCRLKLLGFLQCITGDLDALFVKRISF

Homology

[Close]

BLAST of CmoCh11G020610 vs. ExPASy TrEMBL
Match: A0A7J8VZZ7 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_001136 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.9e-05
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 2   ECIYSYWIRLPTAKELEMEVSKGVQKMRSYGSTLLIAYKCRLKLL---GFLQCITGDLDA 61
           + I  Y IRLPT KELEM+VSK V+KMR Y STLL AYKC   LL     L  I G++  
Sbjct: 203 DIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKCNNLLLIWACILHTIHGNMQQ 262

Query: 62  LFVKRI 65
            +++++
Sbjct: 263 GYLQKL 268

[Close]

BLAST of CmoCh11G020610 vs. ExPASy TrEMBL
Match: A0A445C0S8 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g040844 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-04
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 2   ECIYSYWIRLPTAKELEMEVSKGVQKMRSYGSTLLIAYKCRLKLLGFLQ 51
           + +  Y IRLPT KELEM+VSK V+KMR Y STLL AYK  L+ L +L+
Sbjct: 242 DIVPGYRIRLPTEKELEMKVSKTVRKMRYYESTLLSAYKAYLQRLMYLE 290

[Close]

BLAST of CmoCh11G020610 vs. ExPASy TrEMBL
Match: A0A6P4BGP7 (LOW QUALITY PROTEIN: nucleolar complex protein 3 homolog OS=Arachis duranensis OX=130453 GN=LOC107463216 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-04
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 2   ECIYSYWIRLPTAKELEMEVSKGVQKMRSYGSTLLIAYKCRLKLLGFLQ 51
           + +  Y IRLPT KELEM+VSK V+KMR Y STLL AYK  L+ L +L+
Sbjct: 204 DIVPGYRIRLPTEKELEMKVSKTVRKMRYYESTLLSAYKAYLQRLMYLE 252

[Close]

BLAST of CmoCh11G020610 vs. ExPASy TrEMBL
Match: A0A059C4F0 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E01785 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-04
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 2   ECIYSYWIRLPTAKELEMEVSKGVQKMRSYGSTLLIAYKCRLKLLGFLQCIT 54
           + I  Y IRLPT KELEM+VSK V+KMR Y STLL AYK  L+ L  L+ ++
Sbjct: 243 DIIPGYRIRLPTEKELEMKVSKDVKKMRYYESTLLSAYKAYLQKLMVLEKVS 294

[Close]

BLAST of CmoCh11G020610 vs. ExPASy TrEMBL
Match: A0A7J0G9C9 (Binding protein OS=Actinidia rufa OX=165716 GN=Acr_19g0002790 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-04
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 2   ECIYSYWIRLPTAKELEMEVSKGVQKMRSYGSTLLIAYKCRLKLLGFLQ 51
           + I  Y IRLPT KELEM VSK V+KMR Y STLL AYK  L+ L  LQ
Sbjct: 244 DIIPGYRIRLPTEKELEMVVSKAVKKMRYYESTLLSAYKAYLQRLTALQ 292

[Close]

BLAST of CmoCh11G020610 vs. TAIR 10
Match: AT1G79150.1 (binding )

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-06
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 2   ECIYSYWIRLPTAKELEMEVSKGVQKMRSYGSTLLIAYKCRLKLL 47
           + I  Y IRLPT KELEM++SK V+K R Y STLL AYK  L+ L
Sbjct: 240 DIIPGYRIRLPTEKELEMKISKEVKKTRFYESTLLKAYKSYLQKL 284

The following BLAST results are available for this feature:

BLAST of CmoCh11G020610 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G020610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J8VZZ7	5.9e-05	50.00	Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_001136 PE=3...	[more]
A0A445C0S8	1.7e-04	59.18	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g040844 PE=3 SV=1	[more]
A0A6P4BGP7	1.7e-04	59.18	LOW QUALITY PROTEIN: nucleolar complex protein 3 homolog OS=Arachis duranensis O...	[more]
A0A059C4F0	2.2e-04	57.69	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E01785 PE=3 SV...	[more]
A0A7J0G9C9	2.2e-04	63.27	Binding protein OS=Actinidia rufa OX=165716 GN=Acr_19g0002790 PE=4 SV=1	[more]

BLAST of CmoCh11G020610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79150.1	1.4e-06	60.00	binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011501	Nucleolar complex-associated protein 3, N-terminal	PFAM	PF07540	NOC3p	coord: 6..40 e-value: 2.8E-4 score: 21.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G020610.1	CmoCh11G020610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006270	DNA replication initiation
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003682	chromatin binding