CmoCh11G020600 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAACCCCCAATCCCCTCTCTCTCTTTTCCCCTCTGCCTCCCTCTATAAAGCTCCAAATATGGCCGCCCAAGTGAGCAGTCTTATTCGAGTTCTCGCCGGCTACAAGGACCAAGACAACCGGGCCGCCCTCGAGGAATCAACGGCTCTCACTACTCGTGATTTGCTCGGTCAATCTTCCAACCTCGCTGACTCTCAGGAACTGGACCTCGATTTGCAGGTTCCCTCCGGCTGGGAAAAGCGCCTCGACTTGAAGGTTTCTTCAATTTCATCCCTTTTTAACTTCCAAAATCTCAACGCCTCCTTCATTTTATAGCAACTCTTCGTTAAATCTTCCAATTCAAGATTCCTTTTATTCAATTCAGAAATTGGGCTGAAAAAAATGGGGTGGGAACTATTTTATTGCACTTGTGGGTGTGCTCTATGTTCTTGGATGCTCTGCAAATACTGTAACTTTTTTTATATTTTTCCTCTGATTTTAATGACATTCATTGCGGCGCTTTATTTTATTTTTTAAAAGAGTTCTTGGTGTTTGTACTCGCCTGATTAATTATCCCCACCCTGACCCTATTCAATTACCACCCCCTCTCCTCTGAAATCATTGGGTTAAAAACAAATCCTCTGTTCGTGTTTGCAGTCGGGAAAAGTTTACATACAGAGAAGTCAGACTCCAGATTCTCCTCTGAATTCAGATTCCAAACAACGCCAAATGAAGAATCAAACAGAATCCAAATCCCAGGACTTGAATTTCCCCCCATCTCCTTCAAAACGAACATTAAATCTCTTCAATGAAACCAGCTTGGATTTGAATTTGACGTCGTCGACCAATTACGCCAGCGTTTGCACTCTGGATAAGGTCAAATCTGCTTTAGAAAGGGCCGACAAGGAGCTGATTAAAAAACGGTCTACGCTTTGGAAGTCGCCGTCCTCCCCCTCGGCGGCGAAGGAAATTCAAGAAGAAGAGGCGGCGGAAAGTAGAAAGTCGGCGGCGCCGATGGCGGTGGGTTGTCCTGGATGTCTATCTTATGTATTGGTGACGAAAAACAACCCAAGATGTCCTCGATGCAATTCTGTTGTTCCATTGCCGAGCATCAAGAAACCTCGAATCGACCTAAACATATCCATATAAAAATGGTCGGGAATCGTTCATCATGAACCAATATATAAAATGAAGAAATTTTGGGGCATGGTTCTATTGTTGCGGGTACATGTAAAATGAACATATTTACACCAAAAATATTATGCCTTCCATTGTTCAATTTGTTGGGTTTGTCTGGCTCTTTCAATTTTTGTTTTGTTTGACCATTTTGG CAAACCCCCAATCCCCTCTCTCTCTTTTCCCCTCTGCCTCCCTCTATAAAGCTCCAAATATGGCCGCCCAAGTGAGCAGTCTTATTCGAGTTCTCGCCGGCTACAAGGACCAAGACAACCGGGCCGCCCTCGAGGAATCAACGGCTCTCACTACTCGTGATTTGCTCGGTCAATCTTCCAACCTCGCTGACTCTCAGGAACTGGACCTCGATTTGCAGGTTCCCTCCGGCTGGGAAAAGCGCCTCGACTTGAAGTCGGGAAAAGTTTACATACAGAGAAGTCAGACTCCAGATTCTCCTCTGAATTCAGATTCCAAACAACGCCAAATGAAGAATCAAACAGAATCCAAATCCCAGGACTTGAATTTCCCCCCATCTCCTTCAAAACGAACATTAAATCTCTTCAATGAAACCAGCTTGGATTTGAATTTGACGTCGTCGACCAATTACGCCAGCGTTTGCACTCTGGATAAGGTCAAATCTGCTTTAGAAAGGGCCGACAAGGAGCTGATTAAAAAACGGTCTACGCTTTGGAAGTCGCCGTCCTCCCCCTCGGCGGCGAAGGAAATTCAAGAAGAAGAGGCGGCGGAAAGTAGAAAGTCGGCGGCGCCGATGGCGGTGGGTTGTCCTGGATGTCTATCTTATGTATTGGTGACGAAAAACAACCCAAGATGTCCTCGATGCAATTCTGTTGTTCCATTGCCGAGCATCAAGAAACCTCGAATCGACCTAAACATATCCATATAAAAATGGTCGGGAATCGTTCATCATGAACCAATATATAAAATGAAGAAATTTTGGGGCATGGTTCTATTGTTGCGGGTACATGTAAAATGAACATATTTACACCAAAAATATTATGCCTTCCATTGTTCAATTTGTTGGGTTTGTCTGGCTCTTTCAATTTTTGTTTTGTTTGACCATTTTGG ATGGCCGCCCAAGTGAGCAGTCTTATTCGAGTTCTCGCCGGCTACAAGGACCAAGACAACCGGGCCGCCCTCGAGGAATCAACGGCTCTCACTACTCGTGATTTGCTCGGTCAATCTTCCAACCTCGCTGACTCTCAGGAACTGGACCTCGATTTGCAGGTTCCCTCCGGCTGGGAAAAGCGCCTCGACTTGAAGTCGGGAAAAGTTTACATACAGAGAAGTCAGACTCCAGATTCTCCTCTGAATTCAGATTCCAAACAACGCCAAATGAAGAATCAAACAGAATCCAAATCCCAGGACTTGAATTTCCCCCCATCTCCTTCAAAACGAACATTAAATCTCTTCAATGAAACCAGCTTGGATTTGAATTTGACGTCGTCGACCAATTACGCCAGCGTTTGCACTCTGGATAAGGTCAAATCTGCTTTAGAAAGGGCCGACAAGGAGCTGATTAAAAAACGGTCTACGCTTTGGAAGTCGCCGTCCTCCCCCTCGGCGGCGAAGGAAATTCAAGAAGAAGAGGCGGCGGAAAGTAGAAAGTCGGCGGCGCCGATGGCGGTGGGTTGTCCTGGATGTCTATCTTATGTATTGGTGACGAAAAACAACCCAAGATGTCCTCGATGCAATTCTGTTGTTCCATTGCCGAGCATCAAGAAACCTCGAATCGACCTAAACATATCCATATAA MAAQVSSLIRVLAGYKDQDNRAALEESTALTTRDLLGQSSNLADSQELDLDLQVPSGWEKRLDLKSGKVYIQRSQTPDSPLNSDSKQRQMKNQTESKSQDLNFPPSPSKRTLNLFNETSLDLNLTSSTNYASVCTLDKVKSALERADKELIKKRSTLWKSPSSPSAAKEIQEEEAAESRKSAAPMAVGCPGCLSYVLVTKNNPRCPRCNSVVPLPSIKKPRIDLNISI Homology
BLAST of CmoCh11G020600 vs. ExPASy TrEMBL
Match: A0A6J1EXD9 (uncharacterized protein LOC111437042 OS=Cucurbita moschata OX=3662 GN=LOC111437042 PE=4 SV=1) HSP 1 Score: 431.8 bits (1109), Expect = 1.8e-117 Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0
BLAST of CmoCh11G020600 vs. ExPASy TrEMBL
Match: A0A6J1JJG7 (uncharacterized protein LOC111486368 OS=Cucurbita maxima OX=3661 GN=LOC111486368 PE=4 SV=1) HSP 1 Score: 424.5 bits (1090), Expect = 2.8e-115 Identity = 223/228 (97.81%), Postives = 227/228 (99.56%), Query Frame = 0
BLAST of CmoCh11G020600 vs. ExPASy TrEMBL
Match: A0A0A0K3J9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238440 PE=4 SV=1) HSP 1 Score: 375.6 bits (963), Expect = 1.5e-100 Identity = 207/243 (85.19%), Postives = 215/243 (88.48%), Query Frame = 0
BLAST of CmoCh11G020600 vs. ExPASy TrEMBL
Match: A0A1S3BGM6 (uncharacterized protein LOC103489640 OS=Cucumis melo OX=3656 GN=LOC103489640 PE=4 SV=1) HSP 1 Score: 375.6 bits (963), Expect = 1.5e-100 Identity = 207/243 (85.19%), Postives = 216/243 (88.89%), Query Frame = 0
BLAST of CmoCh11G020600 vs. ExPASy TrEMBL
Match: A0A6J1HWE1 (uncharacterized protein LOC111468450 OS=Cucurbita maxima OX=3661 GN=LOC111468450 PE=4 SV=1) HSP 1 Score: 353.2 bits (905), Expect = 8.1e-94 Identity = 204/250 (81.60%), Postives = 213/250 (85.20%), Query Frame = 0
BLAST of CmoCh11G020600 vs. TAIR 10
Match: AT1G79160.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 181.4 bits (459), Expect = 8.1e-46 Identity = 122/247 (49.39%), Postives = 156/247 (63.16%), Query Frame = 0
BLAST of CmoCh11G020600 vs. TAIR 10
Match: AT1G16500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 170.6 bits (431), Expect = 1.4e-42 Identity = 123/271 (45.39%), Postives = 159/271 (58.67%), Query Frame = 0
BLAST of CmoCh11G020600 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 43.5 bits (101), Expect = 2.6e-04 Identity = 25/89 (28.09%), Postives = 49/89 (55.06%), Query Frame = 0
BLAST of CmoCh11G020600 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 43.1 bits (100), Expect = 3.4e-04 Identity = 25/61 (40.98%), Postives = 36/61 (59.02%), Query Frame = 0
BLAST of CmoCh11G020600 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 42.4 bits (98), Expect = 5.9e-04 Identity = 22/60 (36.67%), Postives = 38/60 (63.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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