CmoCh11G020590 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G020590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Transmembrane protein
Location	Cmo_Chr11: 13950228 .. 13950842 (+)
RNA-Seq Expression	CmoCh11G020590
Synteny	CmoCh11G020590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGATAACAACAACAGATCCTTATCAATCATGGAATCAAAACCTTCACACCCTCTTCACCAAATTGCCAAAACCCCAACCCACAAACTTCTTCTCAAGCAGTGGCTCAAGGAGGAAGAACTAATCTTCGGCAGAGTCTCTCTCAAGGAAACCCAAATCGATTCTGTTCGAAAGGAAATCACTATGCTTCACATTTTCTTCTTCGTCTTCCACTCCACATCTATACTCCTCCTCTTCAACGCCTCCACCAAGGACTTCAACGGCGCAGCCTGCAACAGATCCTGGATTCCCTCCATTTGTTCTCTCTTATTCTCTCTGGGCATCATTTGGGCTGTCAGATACAAGACTGAGCTCGAGGCCCATTTGGAGAAATTGTTAGAAAGGGAAAAAGAAGATAGAAATTTGCTGTCCAAGTGTGTTGAAGAGTTGAAGCGGAAAGGGGTTGAATTTGATTTGTTGAAGGAGGTCGATGCGCTGCGGAGGGCGAAGAGCTTGCGGGTCGAAAGTAAGGCTGTGAGAAAATGGTCTTCAAGGGATTTCATGACTCTGTTTTTCTTCTCTGTTTCGTGTATGTTTCTTGGGATTATTAGGATTGTTCTATGTGACAAGTGA

mRNA sequence

ATGAACGATAACAACAACAGATCCTTATCAATCATGGAATCAAAACCTTCACACCCTCTTCACCAAATTGCCAAAACCCCAACCCACAAACTTCTTCTCAAGCAGTGGCTCAAGGAGGAAGAACTAATCTTCGGCAGAGTCTCTCTCAAGGAAACCCAAATCGATTCTGTTCGAAAGGAAATCACTATGCTTCACATTTTCTTCTTCGTCTTCCACTCCACATCTATACTCCTCCTCTTCAACGCCTCCACCAAGGACTTCAACGGCGCAGCCTGCAACAGATCCTGGATTCCCTCCATTTGTTCTCTCTTATTCTCTCTGGGCATCATTTGGGCTGTCAGATACAAGACTGAGCTCGAGGCCCATTTGGAGAAATTGTTAGAAAGGGAAAAAGAAGATAGAAATTTGCTGTCCAAGTGTGTTGAAGAGTTGAAGCGGAAAGGGGTTGAATTTGATTTGTTGAAGGAGGTCGATGCGCTGCGGAGGGCGAAGAGCTTGCGGGTCGAAAGTAAGGCTGTGAGAAAATGGTCTTCAAGGGATTTCATGACTCTGTTTTTCTTCTCTGTTTCGTGTATGTTTCTTGGGATTATTAGGATTGTTCTATGTGACAAGTGA

Coding sequence (CDS)

ATGAACGATAACAACAACAGATCCTTATCAATCATGGAATCAAAACCTTCACACCCTCTTCACCAAATTGCCAAAACCCCAACCCACAAACTTCTTCTCAAGCAGTGGCTCAAGGAGGAAGAACTAATCTTCGGCAGAGTCTCTCTCAAGGAAACCCAAATCGATTCTGTTCGAAAGGAAATCACTATGCTTCACATTTTCTTCTTCGTCTTCCACTCCACATCTATACTCCTCCTCTTCAACGCCTCCACCAAGGACTTCAACGGCGCAGCCTGCAACAGATCCTGGATTCCCTCCATTTGTTCTCTCTTATTCTCTCTGGGCATCATTTGGGCTGTCAGATACAAGACTGAGCTCGAGGCCCATTTGGAGAAATTGTTAGAAAGGGAAAAAGAAGATAGAAATTTGCTGTCCAAGTGTGTTGAAGAGTTGAAGCGGAAAGGGGTTGAATTTGATTTGTTGAAGGAGGTCGATGCGCTGCGGAGGGCGAAGAGCTTGCGGGTCGAAAGTAAGGCTGTGAGAAAATGGTCTTCAAGGGATTTCATGACTCTGTTTTTCTTCTCTGTTTCGTGTATGTTTCTTGGGATTATTAGGATTGTTCTATGTGACAAGTGA

Protein sequence

MNDNNNRSLSIMESKPSHPLHQIAKTPTHKLLLKQWLKEEELIFGRVSLKETQIDSVRKEITMLHIFFFVFHSTSILLLFNASTKDFNGAACNRSWIPSICSLLFSLGIIWAVRYKTELEAHLEKLLEREKEDRNLLSKCVEELKRKGVEFDLLKEVDALRRAKSLRVESKAVRKWSSRDFMTLFFFSVSCMFLGIIRIVLCDK

Homology

[Close]

BLAST of CmoCh11G020590 vs. ExPASy TrEMBL
Match: A0A6J1ER49 (uncharacterized protein LOC111437043 OS=Cucurbita moschata OX=3662 GN=LOC111437043 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 9.7e-107
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MNDNNNRSLSIMESKPSHPLHQIAKTPTHKLLLKQWLKEEELIFGRVSLKETQIDSVRKE 60
           MNDNNNRSLSIMESKPSHPLHQIAKTPTHKLLLKQWLKEEELIFGRVSLKETQIDSVRKE
Sbjct: 1   MNDNNNRSLSIMESKPSHPLHQIAKTPTHKLLLKQWLKEEELIFGRVSLKETQIDSVRKE 60

Query: 61  ITMLHIFFFVFHSTSILLLFNASTKDFNGAACNRSWIPSICSLLFSLGIIWAVRYKTELE 120
           ITMLHIFFFVFHSTSILLLFNASTKDFNGAACNRSWIPSICSLLFSLGIIWAVRYKTELE
Sbjct: 61  ITMLHIFFFVFHSTSILLLFNASTKDFNGAACNRSWIPSICSLLFSLGIIWAVRYKTELE 120

Query: 121 AHLEKLLEREKEDRNLLSKCVEELKRKGVEFDLLKEVDALRRAKSLRVESKAVRKWSSRD 180
           AHLEKLLEREKEDRNLLSKCVEELKRKGVEFDLLKEVDALRRAKSLRVESKAVRKWSSRD
Sbjct: 121 AHLEKLLEREKEDRNLLSKCVEELKRKGVEFDLLKEVDALRRAKSLRVESKAVRKWSSRD 180

Query: 181 FMTLFFFSVSCMFLGIIRIVLCDK 205
           FMTLFFFSVSCMFLGIIRIVLCDK
Sbjct: 181 FMTLFFFSVSCMFLGIIRIVLCDK 204

[Close]

BLAST of CmoCh11G020590 vs. ExPASy TrEMBL
Match: A0A6J1JLI3 (uncharacterized protein LOC111486287 OS=Cucurbita maxima OX=3661 GN=LOC111486287 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.5e-104
Identity = 200/204 (98.04%), Postives = 201/204 (98.53%), Query Frame = 0


Query: 1   MNDNNNRSLSIMESKPSHPLHQIAKTPTHKLLLKQWLKEEELIFGRVSLKETQIDSVRKE 60
           MNDNNNRSLSIMESKPSHPLHQIAKTPTHKLLLKQWLKEEELIFGRVSLKET IDSVRKE
Sbjct: 1   MNDNNNRSLSIMESKPSHPLHQIAKTPTHKLLLKQWLKEEELIFGRVSLKETLIDSVRKE 60

Query: 61  ITMLHIFFFVFHSTSILLLFNASTKDFNGAACNRSWIPSICSLLFSLGIIWAVRYKTELE 120
           ITMLHIFFFVFHSTSILLLFNAS KDFNGAACNRSWIPSICSLLFSLGIIWAVRYKT+LE
Sbjct: 61  ITMLHIFFFVFHSTSILLLFNASAKDFNGAACNRSWIPSICSLLFSLGIIWAVRYKTDLE 120

Query: 121 AHLEKLLEREKEDRNLLSKCVEELKRKGVEFDLLKEVDALRRAKSLRVESKAVRKWSSRD 180
           AHLEKLLEREKEDRNLLSKCVEELKRKG EFDLLKEVDALRRAKSLRVESKAVRKWSSRD
Sbjct: 121 AHLEKLLEREKEDRNLLSKCVEELKRKGDEFDLLKEVDALRRAKSLRVESKAVRKWSSRD 180

Query: 181 FMTLFFFSVSCMFLGIIRIVLCDK 205
           FMTLFFFSVSCMFLGIIRIVLCDK
Sbjct: 181 FMTLFFFSVSCMFLGIIRIVLCDK 204

[Close]

BLAST of CmoCh11G020590 vs. ExPASy TrEMBL
Match: A0A5A7U7C4 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00150 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.3e-98
Identity = 182/203 (89.66%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MNDNNNRSLSIMESKPSHPLHQIAKTPTHKLLLKQWLKEEELIFGRVSLKETQIDSVRKE 60
           M+D+NN++LSIME KPSHPLHQIA+TPTHKLLLKQWLKEEELIFGR+SLKETQIDSVRKE
Sbjct: 1   MDDSNNKALSIMEPKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKE 60

Query: 61  ITMLHIFFFVFHSTSILLLFNASTKDFNGAACNRSWIPSICSLLFSLGIIWAVRYKTELE 120
           ITMLHIFFFVFHST+ILLLFNASTKDF+G AC RSWIPS+CSLLFSLGIIWAVRYKT++E
Sbjct: 61  ITMLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWAVRYKTDVE 120

Query: 121 AHLEKLLEREKEDRNLLSKCVEELKRKGVEFDLLKEVDALRRAKSLRVESKAVRKWSSRD 180
           AHLEKLLEREKEDRNLLSKCV+ELKRKG+EFDLLKEVDALRRAKSLRVE+KAVRKWSSRD
Sbjct: 121 AHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRD 180

Query: 181 FMTLFFFSVSCMFLGIIRIVLCD 204
           F+TLFFFSVSCMFLG+IR+VLC+
Sbjct: 181 FITLFFFSVSCMFLGVIRVVLCN 203

[Close]

BLAST of CmoCh11G020590 vs. ExPASy TrEMBL
Match: A0A1S3BHA3 (uncharacterized protein LOC103489644 OS=Cucumis melo OX=3656 GN=LOC103489644 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.3e-98
Identity = 182/203 (89.66%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MNDNNNRSLSIMESKPSHPLHQIAKTPTHKLLLKQWLKEEELIFGRVSLKETQIDSVRKE 60
           M+D+NN++LSIME KPSHPLHQIA+TPTHKLLLKQWLKEEELIFGR+SLKETQIDSVRKE
Sbjct: 1   MDDSNNKALSIMEPKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKE 60

Query: 61  ITMLHIFFFVFHSTSILLLFNASTKDFNGAACNRSWIPSICSLLFSLGIIWAVRYKTELE 120
           ITMLHIFFFVFHST+ILLLFNASTKDF+G AC RSWIPS+CSLLFSLGIIWAVRYKT++E
Sbjct: 61  ITMLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWAVRYKTDVE 120

Query: 121 AHLEKLLEREKEDRNLLSKCVEELKRKGVEFDLLKEVDALRRAKSLRVESKAVRKWSSRD 180
           AHLEKLLEREKEDRNLLSKCV+ELKRKG+EFDLLKEVDALRRAKSLRVE+KAVRKWSSRD
Sbjct: 121 AHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRD 180

Query: 181 FMTLFFFSVSCMFLGIIRIVLCD 204
           F+TLFFFSVSCMFLG+IR+VLC+
Sbjct: 181 FITLFFFSVSCMFLGVIRVVLCN 203

[Close]

BLAST of CmoCh11G020590 vs. ExPASy TrEMBL
Match: A0A0A0K424 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237880 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 8.2e-98
Identity = 182/203 (89.66%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MNDNNNRSLSIMESKPSHPLHQIAKTPTHKLLLKQWLKEEELIFGRVSLKETQIDSVRKE 60
           M+D+NN++LS+ME KPSHPLHQIA+TPTHKLLLKQWLKEEELIFGR+SLKETQIDSVRKE
Sbjct: 1   MDDSNNKALSLMEPKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKE 60

Query: 61  ITMLHIFFFVFHSTSILLLFNASTKDFNGAACNRSWIPSICSLLFSLGIIWAVRYKTELE 120
           ITMLHIFFFVFHST+ILLLFNASTKDF+G AC RSWIPS+CSLLFSLGIIWAVRYKT++E
Sbjct: 61  ITMLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWAVRYKTDVE 120

Query: 121 AHLEKLLEREKEDRNLLSKCVEELKRKGVEFDLLKEVDALRRAKSLRVESKAVRKWSSRD 180
           AHLEKLLEREKEDRNLLSKCV+ELKRKG+EFDLLKEVDALRRAKSLRVE+KAVRKWSSRD
Sbjct: 121 AHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRD 180

Query: 181 FMTLFFFSVSCMFLGIIRIVLCD 204
           F+TLFFFSVSCMFLGIIR+VLC+
Sbjct: 181 FITLFFFSVSCMFLGIIRVVLCN 203

[Close]

BLAST of CmoCh11G020590 vs. TAIR 10
Match: AT3G12870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 293.1 bits (749), Expect = 1.7e-79
Identity = 151/206 (73.30%), Postives = 177/206 (85.92%), Query Frame = 0


Query: 1   MNDNNNRSLSIMESKPSHPLHQIAKTPTHKLLLKQWLKEEELIFGRVSLKETQIDSVRKE 60
           M  + + +  IME+K  HPLHQIA TPTHKLLLKQWLKEEELI  RVS KE+QIDSVR+E
Sbjct: 1   MASDQSTNPPIMEAKTRHPLHQIADTPTHKLLLKQWLKEEELILSRVSHKESQIDSVRRE 60

Query: 61  ITMLHIFFFVFHSTSILLLFNASTKDFNGA---ACNRSWIPSICSLLFSLGIIWAVRYKT 120
           IT L+IFFF+FHS S+LLLF+AS+   + A   AC RSWIPS+C+LL SLGIIWAVRYK+
Sbjct: 61  ITQLYIFFFLFHSISLLLLFHASSSSSSSASSSACKRSWIPSLCALLSSLGIIWAVRYKS 120

Query: 121 ELEAHLEKLLEREKEDRNLLSKCVEELKRKGVEFDLLKEVDALRRAKSLRVESKAVRKWS 180
           E+E+HLEKLLEREKED  LL KCVEELK+KG+EFDLLKEVDALRRAKSLRVESK V+KWS
Sbjct: 121 EVESHLEKLLEREKEDAKLLRKCVEELKKKGIEFDLLKEVDALRRAKSLRVESKPVKKWS 180

Query: 181 SRDFMTLFFFSVSCMFLGIIRIVLCD 204
           +RDF+TLFFFSVSC+ L +IR++LCD
Sbjct: 181 ARDFVTLFFFSVSCLVLAMIRLILCD 206

[Close]

BLAST of CmoCh11G020590 vs. TAIR 10
Match: AT5G56120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12870.1); Has 77 Blast hits to 75 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-25
Identity = 72/204 (35.29%), Postives = 117/204 (57.35%), Query Frame = 0


Query: 5   NNRSLSIMESKPSHPLHQIAKTPTHKLLLKQWLKEEELIFGRVSLKETQIDSVRKEITML 64
           +N  + I++    HPL +I+++P H LLLK W +EE+L   RV LKE++++S+++EI  L
Sbjct: 31  SNPGMGILKVIQQHPLSEISESPGHLLLLKLWQREEDLFCRRVLLKESRLESIKREIFQL 90

Query: 65  HIFFFVFHSTSILLLFNASTKD-----FNGAACNRSWIPSICSLLFSLGIIWAVRYKTEL 124
             FF VFH     L++++S  D      + A C + WIPS  SL  SL +++ V+ K  +
Sbjct: 91  CCFFLVFHGFFFTLVYSSSCSDDADVVKSNAVCKKWWIPSAVSLATSLVLVFLVQAKLFV 150

Query: 125 EAHLEKLLEREKEDRNLLSKCVEELKRKGVEFDLLKEVDALRRAKSLRVESK-AVRKWSS 184
              + + + RE+ D   L++CV EL+ KG  FDL KE  + +R KS  VE K     W S
Sbjct: 151 FWKVYRGVNRERNDNRTLTRCVLELRMKGSSFDLSKEPMSGKRMKSSSVEIKWKPVTWFS 210

Query: 185 RDFMTLFFFSVSCMFLGIIRIVLC 203
           +  +T+     + +F  + + +LC
Sbjct: 211 QYLITIVLLCSAGLFFPVSKFILC 234

The following BLAST results are available for this feature:

BLAST of CmoCh11G020590 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G020590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ER49	9.7e-107	100.00	uncharacterized protein LOC111437043 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]
A0A6J1JLI3	3.5e-104	98.04	uncharacterized protein LOC111486287 OS=Cucurbita maxima OX=3661 GN=LOC111486287...	[more]
A0A5A7U7C4	6.3e-98	89.66	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3BHA3	6.3e-98	89.66	uncharacterized protein LOC103489644 OS=Cucumis melo OX=3656 GN=LOC103489644 PE=...	[more]
A0A0A0K424	8.2e-98	89.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237880 PE=4 SV=1	[more]

BLAST of CmoCh11G020590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12870.1	1.7e-79	73.30	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G56120.1	1.1e-25	35.29	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 127..147
None	No IPR available	PANTHER	PTHR33287:SF10	BNAA01G30280D PROTEIN	coord: 9..203
None	No IPR available	PANTHER	PTHR33287	OS03G0453550 PROTEIN	coord: 9..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G020590.1	CmoCh11G020590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane