CmoCh11G020140 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G020140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING-type domain-containing protein
Location	Cmo_Chr11: 13747447 .. 13748845 (+)
RNA-Seq Expression	CmoCh11G020140
Synteny	CmoCh11G020140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGAACGTATGACTTCAAGATTCTTTTCCCAAAAGTAGATTTGCGTTTGAAAGGGTTAAAGCCAGAAATGGTAGATGATGATCCCCACACAACACTCTCATGTGTGAACTACCCCATAGATTATTTCGTATTAACAATCATTTTCATAAAGTATTTCTTTTACTGAGTTGAGATACTTGAGATTATACTGTTCGGGATGGTGGGTTGTTGAAGAAAACTATGCACTACAAATTTATAACGATACATCATTTGTATTTATTATAGGCTTACAAGAGTAAATGGTGCATTCTCACCAAACAGGTTATAGCTTGAATGGCGCATAGGTCTACGTTTTCCCGCTCACACAGTGACAAATCAAACAGGCGGGTCCCCTTTTCCATATAGATCGAGAGCGACCCCTTCACGATTATTGCTTTACTATATCTCTTCATTGCCTGCTGCGGCTCCCCCCTCCACTCCAATGCCAGCCACAAAGTTTTTGATCAATCAGCTCATTCAATCTAACTACAGAAACTTTCTTTAGAGCCAACTTTTTCAGATATGGAAATGGAAATGGAATGAATGGACAGGGTATTGCCCGTCATTCTGCTTCCCAGTTTCTCTCTTCTACACCACCACTCAGCCATGGCAGACATGAAGTCCTGTTCCTGAAGGTCTACGGAACCCTTAAGAATTGGTTAGTAAGATCATTCACTCTTTCACAAAACCCACTTTTTCTTTCCTGATTTAGCTTCTTCTTTGGTCTGAAAAAGCACATTTTGAGGCATTCTTCTTTCTGGGTATGTCTGGATTGTTATCTTCTCTAACACCTGATACCATTTAGGATTCATTTTACTAGAACTCCTTTGTGGGTCTTTTTCGTGTCAGTCCAGCAATTTGGAGGGGAAATGGAGCGGCCAAATCGAGGGCAGAGATGGGCCAATTTGAAGCAACGGCTAGGACTGATGAAGGGGATTGGGTGCTGTGGAGGTTCATGGAGTTCAACATCGTCAACTTTGACGATGATTGATGGTATAGGTTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGACGATGGGACTCGGAGCTCTGCAGCTTCCGGGATGAACTTGGCGATGGCTCTGGCGGCTGAGAGAAACTTGACCGAGGAAGGAGGCCCCACCGTCGGCAATGTGAAATCACTGGTGAGATTATTTGAAGAAATAGACGGTGGGGATTGGAAGACGAGAAGAAAGGAGAGTGAGAACAACGGTGATTGGTTGTGCTGCGTGTGCATGGAGAGGAGTAAAGGTGCTGCTTTTATTCCCTGTGGACACACCTTTTGTAGGGTATGTTCTAGGGAACTACGGCTCAACGGAGGCACATGTCCTATTTGCAGCCGTTCGATCATTGAGATTCTTGATATTTTTTAA

mRNA sequence

ATGTCTAGAACGTATGACTTCAAGATTCTTTTCCCAAAAGTAGATTTGCGTTTGAAAGGGTTAAAGCCAGAAATGGTAGATGATGATCCCCACACAACACTCTCATGTGTGAACTACCCCATAGATTATTTCGTATTAACAATCATTTTCATAAAGCTTACAAGAGTAAATGGTGCATTCTCACCAAACAGATATGGAAATGGAAATGGAATGAATGGACAGGGTATTGCCCGTCATTCTGCTTCCCAGTTTCTCTCTTCTACACCACCACTCAGCCATGGCAGACATGAAGTCCTGTTCCTGAAGGTCTACGGAACCCTTAAGAATTGGTTACAATTTGGAGGGGAAATGGAGCGGCCAAATCGAGGGCAGAGATGGGCCAATTTGAAGCAACGGCTAGGACTGATGAAGGGGATTGGGTGCTGTGGAGGTTCATGGAGTTCAACATCGTCAACTTTGACGATGATTGATGGTATAGGTTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGACGATGGGACTCGGAGCTCTGCAGCTTCCGGGATGAACTTGGCGATGGCTCTGGCGGCTGAGAGAAACTTGACCGAGGAAGGAGGCCCCACCGTCGGCAATGTGAAATCACTGGTGAGATTATTTGAAGAAATAGACGGTGGGGATTGGAAGACGAGAAGAAAGGAGAGTGAGAACAACGGTGATTGGTTGTGCTGCGTGTGCATGGAGAGGAGTAAAGGTGCTGCTTTTATTCCCTGTGGACACACCTTTTGTAGGGTATGTTCTAGGGAACTACGGCTCAACGGAGGCACATGTCCTATTTGCAGCCGTTCGATCATTGAGATTCTTGATATTTTTTAA

Coding sequence (CDS)

ATGTCTAGAACGTATGACTTCAAGATTCTTTTCCCAAAAGTAGATTTGCGTTTGAAAGGGTTAAAGCCAGAAATGGTAGATGATGATCCCCACACAACACTCTCATGTGTGAACTACCCCATAGATTATTTCGTATTAACAATCATTTTCATAAAGCTTACAAGAGTAAATGGTGCATTCTCACCAAACAGATATGGAAATGGAAATGGAATGAATGGACAGGGTATTGCCCGTCATTCTGCTTCCCAGTTTCTCTCTTCTACACCACCACTCAGCCATGGCAGACATGAAGTCCTGTTCCTGAAGGTCTACGGAACCCTTAAGAATTGGTTACAATTTGGAGGGGAAATGGAGCGGCCAAATCGAGGGCAGAGATGGGCCAATTTGAAGCAACGGCTAGGACTGATGAAGGGGATTGGGTGCTGTGGAGGTTCATGGAGTTCAACATCGTCAACTTTGACGATGATTGATGGTATAGGTTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGACGATGGGACTCGGAGCTCTGCAGCTTCCGGGATGAACTTGGCGATGGCTCTGGCGGCTGAGAGAAACTTGACCGAGGAAGGAGGCCCCACCGTCGGCAATGTGAAATCACTGGTGAGATTATTTGAAGAAATAGACGGTGGGGATTGGAAGACGAGAAGAAAGGAGAGTGAGAACAACGGTGATTGGTTGTGCTGCGTGTGCATGGAGAGGAGTAAAGGTGCTGCTTTTATTCCCTGTGGACACACCTTTTGTAGGGTATGTTCTAGGGAACTACGGCTCAACGGAGGCACATGTCCTATTTGCAGCCGTTCGATCATTGAGATTCTTGATATTTTTTAA

Protein sequence

MSRTYDFKILFPKVDLRLKGLKPEMVDDDPHTTLSCVNYPIDYFVLTIIFIKLTRVNGAFSPNRYGNGNGMNGQGIARHSASQFLSSTPPLSHGRHEVLFLKVYGTLKNWLQFGGEMERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLVRLFEEIDGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF

Homology

[Close]

BLAST of CmoCh11G020140 vs. ExPASy Swiss-Prot
Match: Q8LA32 (Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.9e-06
Identity = 22/49 (44.90%), Postives = 30/49 (61.22%), Query Frame = 0


Query: 236 CCVCMERSKGAAFIPCGH-TFCRVCSRELRLNGGTCPICSRSIIEILDI 284
           C +CM  +K  A +PC H   C  C++ELRL    CPIC + I E+L+I
Sbjct: 302 CVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELLEI 350

[Close]

BLAST of CmoCh11G020140 vs. ExPASy Swiss-Prot
Match: P43254 (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 1.9e-04
Identity = 24/77 (31.17%), Postives = 34/77 (44.16%), Query Frame = 0


Query: 201 PTVGNVKSLVRLFEEIDGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCS 260
           P   +V       E  DGG   +     + + D LC +CM+  K A    CGH+FC +C 
Sbjct: 17  PRTSSVGEGANRHENDDGGSGGSEIGAPDLDKDLLCPICMQIIKDAFLTACGHSFCYMCI 76

Query: 261 RELRLNGGTCPICSRSI 278
                N   CP CS+ +
Sbjct: 77  ITHLRNKSDCPCCSQHL 93

[Close]

BLAST of CmoCh11G020140 vs. ExPASy TrEMBL
Match: A0A6J1EWQ9 (uncharacterized protein LOC111437226 OS=Cucurbita moschata OX=3662 GN=LOC111437226 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 5.8e-118
Identity = 213/229 (93.01%), Postives = 214/229 (93.45%), Query Frame = 0


Query: 71  MNGQGIARHSASQFLSSTPPLSHGRHEVLFLKVYGTLKNWL---------------QFGG 130
           MNGQGIARHSASQFLSSTPPLSHGRHEVLFLKVYGTLKNW+               QFGG
Sbjct: 1   MNGQGIARHSASQFLSSTPPLSHGRHEVLFLKVYGTLKNWIHFTRTPLWVFFVSVQQFGG 60

Query: 131 EMERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGT 190
           EMERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGT
Sbjct: 61  EMERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGT 120

Query: 191 RSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLVRLFEEIDGGDWKTRRKESENNGDWL 250
           RSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLVRLFEEIDGGDWKTRRKESENNGDWL
Sbjct: 121 RSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLVRLFEEIDGGDWKTRRKESENNGDWL 180

Query: 251 CCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 285
           CCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
Sbjct: 181 CCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 229

[Close]

BLAST of CmoCh11G020140 vs. ExPASy TrEMBL
Match: A0A6J1JM70 (RING finger protein 141-like OS=Cucurbita maxima OX=3661 GN=LOC111485923 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 4.0e-90
Identity = 163/168 (97.02%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 117 MERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 176
           MERPNRGQRWANLKQRLGLMKG+GCCGG+WSSTSSTLTMIDGIGLSRHGSSRSHRDDG R
Sbjct: 1   MERPNRGQRWANLKQRLGLMKGMGCCGGAWSSTSSTLTMIDGIGLSRHGSSRSHRDDGIR 60

Query: 177 SSAASGMNLAMALAAERNLTEEGGPTVGNVKSLVRLFEEIDGGDWKTRRKESENNGDWLC 236
           SSAASGMNLAMALAAERNLTEEGGPTVGNVKSL+RLFEEIDGGDWKTRRKESENNGDWLC
Sbjct: 61  SSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEIDGGDWKTRRKESENNGDWLC 120

Query: 237 CVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 285
           CVCMERSKGAAFIPCGHTFCRVCSRELRL GGTCPICSRSIIEILDIF
Sbjct: 121 CVCMERSKGAAFIPCGHTFCRVCSRELRLKGGTCPICSRSIIEILDIF 168

[Close]

BLAST of CmoCh11G020140 vs. ExPASy TrEMBL
Match: A0A6J1HXI8 (RNA-binding protein MEX3B-like OS=Cucurbita maxima OX=3661 GN=LOC111468383 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 7.2e-76
Identity = 144/170 (84.71%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 117 MERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 176
           MER N G+RWANLKQRLGL KG+GCCGGSWS TSSTLTMI+G+ LSRHGSSRSHR+DG R
Sbjct: 1   MERQNGGRRWANLKQRLGL-KGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGAR 60

Query: 177 SSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLVRLFEEIDGGDWKTRRKESENNGDW 236
           SSA+SG+NLAMALAAERNL T+EGGPT  G+VKSL+RLFEE+DGGDWKT+RKESEN GDW
Sbjct: 61  SSASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDW 120

Query: 237 LCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 285
           +CCVCMERSKGAAFIPCGHTFCRVCSREL LN GTCPIC+RSIIEILDIF
Sbjct: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169

[Close]

BLAST of CmoCh11G020140 vs. ExPASy TrEMBL
Match: A0A6J1GME5 (RNA-binding protein MEX3B-like OS=Cucurbita moschata OX=3662 GN=LOC111455597 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 7.2e-76
Identity = 144/170 (84.71%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 117 MERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 176
           MER N G+RWANLKQRLGL KG+GCCGGSWS TSSTLTMI+G+ LSRHGSSRSHR+DG R
Sbjct: 1   MERQNGGRRWANLKQRLGL-KGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGAR 60

Query: 177 SSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLVRLFEEIDGGDWKTRRKESENNGDW 236
           SSA+SG+NLAMALAAERNL T+EGGPT  G+VKSL+RLFEE+DGGDWKT+RKESEN GDW
Sbjct: 61  SSASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDW 120

Query: 237 LCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 285
           +CCVCMERSKGAAFIPCGHTFCRVCSREL LN GTCPIC+RSIIEILDIF
Sbjct: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169

[Close]

BLAST of CmoCh11G020140 vs. ExPASy TrEMBL
Match: A0A5A7V0I3 (Zf-C3HC4_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00070 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 8.8e-74
Identity = 143/170 (84.12%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 117 MERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 176
           MER NRG+RWANLKQRLGL KG+GCC GSWS TSSTLTMI+G  LS HGSSRS R+DG R
Sbjct: 1   MERANRGRRWANLKQRLGL-KGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQREDGGR 60

Query: 177 SSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLVRLFEEIDGGDWKTRRKESENNGDW 236
           SSAASGMNLAMALAAERNL ++EGGPT   +VKSL+RLFEE+DGGDWKT+RKE ENNGDW
Sbjct: 61  SSAASGMNLAMALAAERNLRSDEGGPTGASDVKSLMRLFEEMDGGDWKTKRKEGENNGDW 120

Query: 237 LCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 285
           +CCVCMERSKGAAFIPCGHTFCRVCSREL LN GTCPICSRSIIEILDIF
Sbjct: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

[Close]

BLAST of CmoCh11G020140 vs. TAIR 10
Match: AT4G03965.1 (RING/U-box superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.9e-28
Identity = 87/191 (45.55%), Postives = 107/191 (56.02%), Query Frame = 0


Query: 111 LQFGGEMERPNRGQRWANLKQRLGLMKGIGCCGGSWS--STSSTLTMIDGIGLSRHGSSR 170
           LQ  G ++R  R +R   LK+RLG  K IGCCG +W    TS+T    D    +R  S  
Sbjct: 27  LQMDG-LDRSRRRKR--TLKERLG-FKRIGCCGPTWGLRLTSNTGEDDDEPFENRLVSGS 86

Query: 171 SHRDDGTRSSAASGMNLAMALAAERNL----TEEGGPTVGNVKSLVRLFEE------IDG 230
            H           GMNLA ALAAERN     TE  G       SL+RL EE      ++ 
Sbjct: 87  DH----VTGPLNQGMNLATALAAERNYRTEETEASGSLTPLKVSLMRLLEETAERVVVEE 146

Query: 231 GDWKTRRKESEN-----NGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPIC 285
            + +     + +     N D +CCVCM R KGAAFIPCGHTFCRVCSRE+ LN G+CP+C
Sbjct: 147 NETERVTASASSTVRGVNNDSVCCVCMGRKKGAAFIPCGHTFCRVCSREVWLNRGSCPLC 206

[Close]

BLAST of CmoCh11G020140 vs. TAIR 10
Match: AT4G22250.1 (RING/U-box superfamily protein )

HSP 1 Score: 116.7 bits (291), Expect = 3.0e-26
Identity = 80/187 (42.78%), Postives = 95/187 (50.80%), Query Frame = 0


Query: 124 QRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRS------ 183
           +R   LK+RL   K IGCCG +W+   +  T +          S + RDD          
Sbjct: 38  RRKRTLKERL-RFKCIGCCGPTWNLRLTNNTTL---------HSPTSRDDEIEELQIETG 97

Query: 184 -------SAASGMNLAMALAAER----NLTEEGGPTVGNVKSLVRLFEEIDGGDWKTRRK 243
                   + +GMNLA AL AER      TE          SL+RL EE          K
Sbjct: 98  LVLESDHGSGTGMNLATALEAERYNRGESTEAEADMTPRRVSLMRLLEETAEKIVDDDGK 157

Query: 244 ESE---------NNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSI 285
           E+E            D +CCVCM R KGAAFIPCGHTFCRVCSREL LN G+CP+C+R I
Sbjct: 158 ETEILTASIGTLTGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPI 214

[Close]

BLAST of CmoCh11G020140 vs. TAIR 10
Match: AT1G62370.1 (RING/U-box superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 9.8e-25
Identity = 77/185 (41.62%), Postives = 101/185 (54.59%), Query Frame = 0


Query: 116 EMERPNRGQR----WANLKQRLGLMKGIGCCGGSWS---STSSTLTMIDGIGLSRHGSSR 175
           E ++ N G R    W  LKQRL     +GCCG   +     + T  ++D         ++
Sbjct: 27  EEDQINGGDRTMSKWTTLKQRL-RFDWVGCCGKPLTLRLRQAETPIVVDDDDDEEESQNQ 86

Query: 176 --SHRDDGTRS-----SAASGMNLAMALAAER--NLTEEGGPTVGNVKSLVRLFEEIDGG 235
                D GT +     +  S  NLA ALA ER  ++TEE   T      L+RL  E DG 
Sbjct: 87  VVDFSDPGTGTELDCLTRGSTRNLAEALAEERLAHVTEE--ETAVTKVPLMRLLAESDGC 146

Query: 236 DWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIE 285
           D  T    +    D LCCVCM R KGAAFIPCGHT+CRVCSRE+ +N GTCP+C+RSI +
Sbjct: 147 DSTT----TWLGNDPLCCVCMGREKGAAFIPCGHTYCRVCSREIWMNRGTCPLCNRSIFD 204

[Close]

BLAST of CmoCh11G020140 vs. TAIR 10
Match: AT3G25030.1 (RING/U-box superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-19
Identity = 71/192 (36.98%), Postives = 100/192 (52.08%), Query Frame = 0


Query: 117 MERPNRGQR----WANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGS------ 176
           M+R +R  R    W +L+++L L +     G  W S++S  ++   I    + S      
Sbjct: 63  MQREHRHSRDKTAWKSLREKLRLKRN----GSVWISSNSIPSLDTPIPNRDNVSHQLGFL 122

Query: 177 -SRSHRDDGTRSSAASGMNLAMALAAERNLT--EEGGPTVGNVK----SLVRLFEEIDGG 236
            S S       SS    + L   LA ER L+  EE  P    V+    SL+ L EE +G 
Sbjct: 123 LSNSGNVTEEASSVEGRIRLGAVLAEERALSAREEETPAEREVEPARMSLMELLEENEGQ 182

Query: 237 -DWKTRRKESENN------GDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPI 285
             + +   E+E         +  CCVCM RSKGAAFIPCGHTFCR+CSREL +  G CP+
Sbjct: 183 MSFVSVDGEAEEEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPL 242

[Close]

BLAST of CmoCh11G020140 vs. TAIR 10
Match: AT3G25030.2 (RING/U-box superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-19
Identity = 71/192 (36.98%), Postives = 100/192 (52.08%), Query Frame = 0


Query: 117 MERPNRGQR----WANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGS------ 176
           M+R +R  R    W +L+++L L +     G  W S++S  ++   I    + S      
Sbjct: 63  MQREHRHSRDKTAWKSLREKLRLKRN----GSVWISSNSIPSLDTPIPNRDNVSHQLGFL 122

Query: 177 -SRSHRDDGTRSSAASGMNLAMALAAERNLT--EEGGPTVGNVK----SLVRLFEEIDGG 236
            S S       SS    + L   LA ER L+  EE  P    V+    SL+ L EE +G 
Sbjct: 123 LSNSGNVTEEASSVEGRIRLGAVLAEERALSAREEETPAEREVEPARMSLMELLEENEGQ 182

Query: 237 -DWKTRRKESENN------GDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPI 285
             + +   E+E         +  CCVCM RSKGAAFIPCGHTFCR+CSREL +  G CP+
Sbjct: 183 MSFVSVDGEAEEEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPL 242

The following BLAST results are available for this feature:

BLAST of CmoCh11G020140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LA32	9.9e-06	44.90	Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL...	[more]
P43254	1.9e-04	31.17	E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV...	[more]

BLAST of CmoCh11G020140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWQ9	5.8e-118	93.01	uncharacterized protein LOC111437226 OS=Cucurbita moschata OX=3662 GN=LOC1114372...	[more]
A0A6J1JM70	4.0e-90	97.02	RING finger protein 141-like OS=Cucurbita maxima OX=3661 GN=LOC111485923 PE=4 SV...	[more]
A0A6J1HXI8	7.2e-76	84.71	RNA-binding protein MEX3B-like OS=Cucurbita maxima OX=3661 GN=LOC111468383 PE=4 ...	[more]
A0A6J1GME5	7.2e-76	84.71	RNA-binding protein MEX3B-like OS=Cucurbita moschata OX=3662 GN=LOC111455597 PE=...	[more]
A0A5A7V0I3	8.8e-74	84.12	Zf-C3HC4_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of CmoCh11G020140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03965.1	1.9e-28	45.55	RING/U-box superfamily protein	[more]
AT4G22250.1	3.0e-26	42.78	RING/U-box superfamily protein	[more]
AT1G62370.1	9.8e-25	41.62	RING/U-box superfamily protein	[more]
AT3G25030.1	2.1e-19	36.98	RING/U-box superfamily protein	[more]
AT3G25030.2	2.1e-19	36.98	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 236..273 e-value: 6.9E-7 score: 38.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 236..274 score: 11.441815
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 235..279 e-value: 2.4E-11 score: 43.3
None	No IPR available	PANTHER	PTHR46629	OS01G0917900 PROTEIN	coord: 117..284
None	No IPR available	PANTHER	PTHR46629:SF18	LIGASE, PUTATIVE-RELATED	coord: 117..284
None	No IPR available	CDD	cd16449	RING-HC	coord: 236..273 e-value: 7.73857E-9 score: 48.6177
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 227..281
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 215..284 e-value: 2.5E-14 score: 54.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G020140.1	CmoCh11G020140.1	mRNA