CmoCh11G020040 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G020040
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr11: 13711228 .. 13711515 (-)
RNA-Seq ExpressionCmoCh11G020040
SyntenyCmoCh11G020040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTCGCCGCCGTCCGATTCCCCTCCGGCAAGGAGAACCTCCCGCCGCTATCCCAGAAGCAGTTCCCCCCAAATCAAAAGAAACCCATCACCAGAAGAAGATTGAATCGAAAGCCACTCGCTGATATAACCAATTCCTTTGACAGCTCTGTTCGCTTTAGCTTCGTTCAAGATCGTTCCCGCTCTGTCGAATCTGTTTGTTTACAGCTTAATTCCAAGAAGAGGAAGGCTGCTGATGAAATTTGTTCTGGAACTGCTAAATCGCTCAGAATGGGATTTAGATAA

mRNA sequence

ATGGAGTTCGCCGCCGTCCGATTCCCCTCCGGCAAGGAGAACCTCCCGCCGCTATCCCAGAAGCAGTTCCCCCCAAATCAAAAGAAACCCATCACCAGAAGAAGATTGAATCGAAAGCCACTCGCTGATATAACCAATTCCTTTGACAGCTCTGTTCGCTTTAGCTTCGTTCAAGATCGTTCCCGCTCTGTCGAATCTGTTTGTTTACAGCTTAATTCCAAGAAGAGGAAGGCTGCTGATGAAATTTGTTCTGGAACTGCTAAATCGCTCAGAATGGGATTTAGATAA

Coding sequence (CDS)

ATGGAGTTCGCCGCCGTCCGATTCCCCTCCGGCAAGGAGAACCTCCCGCCGCTATCCCAGAAGCAGTTCCCCCCAAATCAAAAGAAACCCATCACCAGAAGAAGATTGAATCGAAAGCCACTCGCTGATATAACCAATTCCTTTGACAGCTCTGTTCGCTTTAGCTTCGTTCAAGATCGTTCCCGCTCTGTCGAATCTGTTTGTTTACAGCTTAATTCCAAGAAGAGGAAGGCTGCTGATGAAATTTGTTCTGGAACTGCTAAATCGCTCAGAATGGGATTTAGATAA

Protein sequence

MEFAAVRFPSGKENLPPLSQKQFPPNQKKPITRRRLNRKPLADITNSFDSSVRFSFVQDRSRSVESVCLQLNSKKRKAADEICSGTAKSLRMGFR
Homology
BLAST of CmoCh11G020040 vs. ExPASy TrEMBL
Match: A0A0A0KE31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419520 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.4e-25
Identity = 65/96 (67.71%), Postives = 75/96 (78.12%), Query Frame = 0

Query: 1   MEFAAVRFPSGKENLPPLSQKQFPPNQKKPITRRRLNRKPLADITNSFDSSVRFSFVQDR 60
           MEF+AVRF S KENLPP + K +P   KKP  RRRLNRKPL DITNSF++++R   +QD 
Sbjct: 61  MEFSAVRFHSDKENLPPFTHKLYPSIPKKPTIRRRLNRKPLLDITNSFENTIRLGSIQDG 120

Query: 61  -SRSVESVCLQLNSKKRKAADEICSGTAKSLRMGFR 96
              SVESVCLQ NS+KRKA DE+ SGTAKSLRMGFR
Sbjct: 121 FIASVESVCLQPNSRKRKAGDEVYSGTAKSLRMGFR 156

BLAST of CmoCh11G020040 vs. ExPASy TrEMBL
Match: A0A1Q3C6Z4 (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_19465 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.8e-05
Identity = 45/95 (47.37%), Postives = 56/95 (58.95%), Query Frame = 0

Query: 12  KENLPPLSQKQF------PPNQKKPITRRRLNRKPLADITNSFDSSVRFSFVQDR----- 71
           KEN+PP S KQ        P+ KK  T +R  RKPLADITN F++SV  S  Q+      
Sbjct: 19  KENIPPFSPKQANPVPVNAPSFKKIPTCKRRFRKPLADITNLFNNSVSSSSTQESISLLL 78

Query: 72  SRSVESVCLQLNSKKRKAADEICSGTAKSLRMGFR 96
           S    SVC   N++KRKA   + S ++KSLRMGFR
Sbjct: 79  SSPPVSVCAP-NARKRKA---VGSSSSKSLRMGFR 109

BLAST of CmoCh11G020040 vs. ExPASy TrEMBL
Match: A0A067KHQ2 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12236 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.2e-04
Identity = 39/94 (41.49%), Postives = 51/94 (54.26%), Query Frame = 0

Query: 10  SGKENLPPLSQKQFPP--NQKKPITRRRLNRKPLADITNSFDSSVRFSFVQDRSR--SVE 69
           S KEN+PP S KQ  P    K+   RR+  R+PL DIT  + S ++ +  QD     SV 
Sbjct: 13  SNKENIPPFSAKQENPVLASKRSEFRRKRVRRPLEDITYFYQSYIQLALAQDSDSFLSVS 72

Query: 70  SVCLQLNSKKRKAADE----ICSGTAKSLRMGFR 96
                 NSKKRKA++E    +    +KSLR GFR
Sbjct: 73  VPSCASNSKKRKASEEDQENVAVPKSKSLRFGFR 106

BLAST of CmoCh11G020040 vs. ExPASy TrEMBL
Match: A0A7N2ME93 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.2e-04
Identity = 41/109 (37.61%), Postives = 55/109 (50.46%), Query Frame = 0

Query: 1   MEFAAVRFPSGKENLPPLSQKQFPP---NQKKPITRRRLNRKPLADITNSFDSSVRFSFV 60
           ME  A+   + KEN+PP       P      K  T+RR+ RKPLADITN F++S +    
Sbjct: 4   MEAVALCDHNNKENIPPSKHTNPVPVNVQSFKKSTKRRILRKPLADITNLFNNSAQLRAD 63

Query: 61  QDRSRSVESVCLQL------NSKKRKA-----ADEICSGTAKSLRMGFR 96
           Q+ S S+   C          S+KRKA      D +   ++ SLRMGFR
Sbjct: 64  QESSNSLVPTCTTFASACASKSRKRKALELEEIDPVQVTSSMSLRMGFR 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KE317.4e-2567.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419520 PE=4 SV=1[more]
A0A1Q3C6Z43.8e-0547.37Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3... [more]
A0A067KHQ24.2e-0441.49Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12236 PE=4 SV=1[more]
A0A7N2ME937.2e-0437.61Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G020040.1CmoCh11G020040.1mRNA