CmoCh11G019910 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G019910
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionProtein root UVB sensitive 1, chloroplastic
LocationCmo_Chr11: 13642648 .. 13643365 (-)
RNA-Seq ExpressionCmoCh11G019910
SyntenyCmoCh11G019910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGGGGCTAAGCGATCTATTGAAGCTGTGGGATGTAAAAATACATCAGTAAGACAGCGTTCCGCCTTAGAGGGAAGCACTTGCGCAAGTAGTGGTGGACAAAGTGGAAGCGAGAATGTCGGCTTGAGTAACACAAACATTGGTAAGAATCCAATGCTTCAAAAACCTAACGGTTCCTCCGCAAGATTCTACAAAAGGTGAGTAAGGGCCCAAGATTAGGTCAAAAGGCGTAGTCGATGGACAACAGGTGAATATTTCTGTACTACCCATTGTTGGTCCCGAGGGATGGAGGAGGCAATATTAAAGGAAAAGTTAAAAGAGAATAATATCTACTCGTAGTGAGCTTGGACTGTTACGCTCCGAAACTAAGGATTTGATCCAAACCAAAGCCAAATTCCATGTTTGCCAACCTCATCTCTATCGTTTGATTTTTAGGAATTCAGATCAAAATAATGAAAAGGGATGTGTAGGTTTCAATGGCGCAAAGAGACGTTTTTGCTTGAAAGCAAATGAACCAAAAAACTGGACATATTTGTATGCTAAGTTGTGGAATAAAGTTTATAGAATCACTCCAAGAGAGTCCCACCTTCGACGTTTCAGAGCCAAGGATAACGAACTTTCCATTAGAATGCTTCTAAAAAGATGGCTACTTGTCTGGTTGATTACTACTCAACAAAGGAGAGAGAGAGGTTCTATGGCTGAAGCAAAGACTTGA

mRNA sequence

ATGAACGGGGCTAAGCGATCTATTGAAGCTGTGGGATGTAAAAATACATCAGTAAGACAGCGTTCCGCCTTAGAGGGAAGCACTTGCGCAAGTAGTGGTGGACAAAGTGGAAGCGAGAATGTCGGCTTGAGTAACACAAACATTGGTAAGAATCCAATGCTTCAAAAACCTAACGGTTCCTCCGCAAGATTCTACAAAAGGAATTCAGATCAAAATAATGAAAAGGGATGTGTAGGTTTCAATGGCGCAAAGAGACGTTTTTGCTTGAAAGCAAATGAACCAAAAAACTGGACATATTTGTATGCTAAGTTGTGGAATAAAGTTTATAGAATCACTCCAAGAGAGTCCCACCTTCGACGTTTCAGAGCCAAGGATAACGAACTTTCCATTAGAATGCTTCTAAAAAGATGGCTACTTGTCTGGTTGATTACTACTCAACAAAGGAGAGAGAGAGGTTCTATGGCTGAAGCAAAGACTTGA

Coding sequence (CDS)

ATGAACGGGGCTAAGCGATCTATTGAAGCTGTGGGATGTAAAAATACATCAGTAAGACAGCGTTCCGCCTTAGAGGGAAGCACTTGCGCAAGTAGTGGTGGACAAAGTGGAAGCGAGAATGTCGGCTTGAGTAACACAAACATTGGTAAGAATCCAATGCTTCAAAAACCTAACGGTTCCTCCGCAAGATTCTACAAAAGGAATTCAGATCAAAATAATGAAAAGGGATGTGTAGGTTTCAATGGCGCAAAGAGACGTTTTTGCTTGAAAGCAAATGAACCAAAAAACTGGACATATTTGTATGCTAAGTTGTGGAATAAAGTTTATAGAATCACTCCAAGAGAGTCCCACCTTCGACGTTTCAGAGCCAAGGATAACGAACTTTCCATTAGAATGCTTCTAAAAAGATGGCTACTTGTCTGGTTGATTACTACTCAACAAAGGAGAGAGAGAGGTTCTATGGCTGAAGCAAAGACTTGA

Protein sequence

MNGAKRSIEAVGCKNTSVRQRSALEGSTCASSGGQSGSENVGLSNTNIGKNPMLQKPNGSSARFYKRNSDQNNEKGCVGFNGAKRRFCLKANEPKNWTYLYAKLWNKVYRITPRESHLRRFRAKDNELSIRMLLKRWLLVWLITTQQRRERGSMAEAKT
Homology
[Close]
BLAST of CmoCh11G019910 vs. ExPASy TrEMBL
Match: A0A151TSK6 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_009222 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.0e-18
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 0 

Query: 1  MNGAKRSIEAVGCKNTSVRQRSALEGSTCASSGGQSGSENVGLSNTNIGKNPMLQKPNGS 60
          MNGAKRS EAVGCKN SV +RSALEG TCASSGG+SGSENVGLSN N+G+NPM +KP GS
Sbjct: 29 MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNANVGENPMPRKPKGS 88

Query: 61 SARF 65
          SARF
Sbjct: 89 SARF 92

[Close]
BLAST of CmoCh11G019910 vs. ExPASy TrEMBL
Match: A0A151R6Q7 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_040463 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.0e-18
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 0 

Query: 1  MNGAKRSIEAVGCKNTSVRQRSALEGSTCASSGGQSGSENVGLSNTNIGKNPMLQKPNGS 60
          MNGAKRS EAVGCKN SV +RSALEG TCASSGG+SGSENVGLSN N+G+NPM +KP GS
Sbjct: 1  MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNANVGENPMPRKPKGS 60

Query: 61 SARF 65
          SARF
Sbjct: 61 SARF 64

[Close]
BLAST of CmoCh11G019910 vs. ExPASy TrEMBL
Match: A0A151RN55 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_034569 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.0e-18
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 0 

Query: 1  MNGAKRSIEAVGCKNTSVRQRSALEGSTCASSGGQSGSENVGLSNTNIGKNPMLQKPNGS 60
          MNGAKRS EAVGCKN SV +RSALEG TCASSGG+SGSENVGLSN N+G+NPM +KP GS
Sbjct: 29 MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNANVGENPMPRKPKGS 88

Query: 61 SARF 65
          SARF
Sbjct: 89 SARF 92

[Close]
BLAST of CmoCh11G019910 vs. ExPASy TrEMBL
Match: A0A6A6K2E6 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_043867 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.6e-17
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 0 

Query: 1  MNGAKRSIEAVGCKNTSVRQRSALEGSTCASSGGQSGSENVGLSNTNIGKNPMLQKPNGS 60
          MNG KRS EAVGCKN SV +RSALEGST ASSGG+SGSENVGLSN NIG+NPM +KP GS
Sbjct: 1  MNGVKRSAEAVGCKNASVGERSALEGSTRASSGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 61 SARF 65
          SARF
Sbjct: 61 SARF 64

[Close]
BLAST of CmoCh11G019910 vs. ExPASy TrEMBL
Match: A0A151R6X5 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_040453 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.3e-17
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 0 

Query: 1  MNGAKRSIEAVGCKNTSVRQRSALEGSTCASSGGQSGSENVGLSNTNIGKNPMLQKPNGS 60
          MNGAKRS EAVGCKN SV +RSA EG TC SSGG+SGSENVGLSN N+G+NPM +KP GS
Sbjct: 1  MNGAKRSAEAVGCKNESVGERSASEGRTCTSSGGRSGSENVGLSNANVGENPMPRKPKGS 60

Query: 61 SARF 65
          SARF
Sbjct: 61 SARF 64

The following BLAST results are available for this feature:
BLAST of CmoCh11G019910 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G019910 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A151TSK65.0e-1881.25Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_009222 PE=4 SV=1[more]
A0A151R6Q75.0e-1881.25Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_040463 PE=4 SV=1[more]
A0A151RN555.0e-1881.25Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_034569 PE=4 SV=1[more]
A0A6A6K2E65.6e-1781.25Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_043867 PE=4 SV=1[more]
A0A151R6X57.3e-1778.13Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_040453 PE=4 SV=1[more]
BLAST of CmoCh11G019910 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G019910.1CmoCh11G019910.1mRNA