CmoCh11G019690 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G019690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Cmo_Chr11: 13556210 .. 13556749 (+)
RNA-Seq Expression	CmoCh11G019690
Synteny	CmoCh11G019690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTCGAAGGAGCAACCAAAGATTTCTCTGAAGGATCTTCATCAACCTCTTCCCCTCAGCCTGGTGGATCAATACCAAGCCGATACGAGTCCCAAAAACGAAGAGATTGGAACACATTCTGCCAATACTTGAAGAATCAAAGGCCCCCAGTTCCTCTTTCCCATTGTAGTTGTAACCATGTTTTGGAGTTTTTAAGGTATCTCGATCAGTTCGGCAAGACAAAAGTTCATGTTCAAGGTTGCATGTTTTACGGCCAGCCCGAGCCACCTGCCCCTTGTACTTGTCCTTTAAGACAAGCTTGGGGCAGTTTGGATGCCCTTATTGGGCGCTTGAGAGCTGCTTATGAAGAAAGTGGTGGCTCCCCGGAGACTAACCCCTTTGCTAGCGGTGCAATTAGGGTTTATCTTAGGGATGTGAGAGAGTGTCAAGCTAAAGCAAGAGGAATTCCTTACAAGAAGAAGAAGAAGAAGACTACCACCACTAATCAATCCAAAGGAGCTGAAGATTCAACCTCTATGATGCACTTTGTCCCTTGA

mRNA sequence

ATGTCTTTCGAAGGAGCAACCAAAGATTTCTCTGAAGGATCTTCATCAACCTCTTCCCCTCAGCCTGGTGGATCAATACCAAGCCGATACGAGTCCCAAAAACGAAGAGATTGGAACACATTCTGCCAATACTTGAAGAATCAAAGGCCCCCAGTTCCTCTTTCCCATTGTAGTTGTAACCATGTTTTGGAGTTTTTAAGGTATCTCGATCAGTTCGGCAAGACAAAAGTTCATGTTCAAGGTTGCATGTTTTACGGCCAGCCCGAGCCACCTGCCCCTTGTACTTGTCCTTTAAGACAAGCTTGGGGCAGTTTGGATGCCCTTATTGGGCGCTTGAGAGCTGCTTATGAAGAAAGTGGTGGCTCCCCGGAGACTAACCCCTTTGCTAGCGGTGCAATTAGGGTTTATCTTAGGGATGTGAGAGAGTGTCAAGCTAAAGCAAGAGGAATTCCTTACAAGAAGAAGAAGAAGAAGACTACCACCACTAATCAATCCAAAGGAGCTGAAGATTCAACCTCTATGATGCACTTTGTCCCTTGA

Coding sequence (CDS)

ATGTCTTTCGAAGGAGCAACCAAAGATTTCTCTGAAGGATCTTCATCAACCTCTTCCCCTCAGCCTGGTGGATCAATACCAAGCCGATACGAGTCCCAAAAACGAAGAGATTGGAACACATTCTGCCAATACTTGAAGAATCAAAGGCCCCCAGTTCCTCTTTCCCATTGTAGTTGTAACCATGTTTTGGAGTTTTTAAGGTATCTCGATCAGTTCGGCAAGACAAAAGTTCATGTTCAAGGTTGCATGTTTTACGGCCAGCCCGAGCCACCTGCCCCTTGTACTTGTCCTTTAAGACAAGCTTGGGGCAGTTTGGATGCCCTTATTGGGCGCTTGAGAGCTGCTTATGAAGAAAGTGGTGGCTCCCCGGAGACTAACCCCTTTGCTAGCGGTGCAATTAGGGTTTATCTTAGGGATGTGAGAGAGTGTCAAGCTAAAGCAAGAGGAATTCCTTACAAGAAGAAGAAGAAGAAGACTACCACCACTAATCAATCCAAAGGAGCTGAAGATTCAACCTCTATGATGCACTTTGTCCCTTGA

Protein sequence

MSFEGATKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP

Homology

[Close]

BLAST of CmoCh11G019690 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.7e-75
Identity = 131/147 (89.12%), Postives = 136/147 (92.52%), Query Frame = 0


Query: 27  PSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKVHVQGCMFYG 86
           PSRYESQKRRDWNTF QYLKNQRPPVP+SHCSCNHVL+FLRYLDQFGKTKVHV GCMFYG
Sbjct: 23  PSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYG 82

Query: 87  QPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYLRDVRECQAK 146
           QPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPFASGAIRVYLR+VRECQAK
Sbjct: 83  QPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAK 142

Query: 147 ARGIPYKKKKKKTTTTNQSKGAEDSTS 174
           ARGIPYKKKKKK  T     G EDS+S
Sbjct: 143 ARGIPYKKKKKKKPTPEMGGGREDSSS 169

[Close]

BLAST of CmoCh11G019690 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.8e-62
Identity = 112/156 (71.79%), Postives = 129/156 (82.69%), Query Frame = 0


Query: 18  SSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKV 77
           ++PQP   + SRYESQKRRDWNTF QYL+N RPP+ L+ CS  HV+EFLRYLDQFGKTKV
Sbjct: 21  AAPQPPAQL-SRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKV 80

Query: 78  HVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYL 137
           H  GC FYGQP PP PC CPLRQAWGSLDALIGRLRAAYEESGG+PE+NPFA+ A+R+YL
Sbjct: 81  HASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYL 140

Query: 138 RDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTS 174
           R+VR+ QAKARGIPY+KKK+K +   Q  G E S S
Sbjct: 141 REVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGS 175

[Close]

BLAST of CmoCh11G019690 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.8e-62
Identity = 112/156 (71.79%), Postives = 129/156 (82.69%), Query Frame = 0


Query: 18  SSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKV 77
           ++PQP   + SRYESQKRRDWNTF QYL+N RPP+ L+ CS  HV+EFLRYLDQFGKTKV
Sbjct: 21  AAPQPPAQL-SRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKV 80

Query: 78  HVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYL 137
           H  GC FYGQP PP PC CPLRQAWGSLDALIGRLRAAYEESGG+PE+NPFA+ A+R+YL
Sbjct: 81  HASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYL 140

Query: 138 RDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTS 174
           R+VR+ QAKARGIPY+KKK+K +   Q  G E S S
Sbjct: 141 REVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGS 175

[Close]

BLAST of CmoCh11G019690 vs. ExPASy Swiss-Prot
Match: Q6ATW6 (Protein G1-like8 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L8 PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.4e-60
Identity = 105/137 (76.64%), Postives = 119/137 (86.86%), Query Frame = 0


Query: 28  SRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQ 87
           SRYESQKRRDWNTF QYLKN RPP+ L+ CS  HV+EFL+YLDQFGKTKVH  GC +YGQ
Sbjct: 29  SRYESQKRRDWNTFLQYLKNHRPPLTLARCSGAHVIEFLKYLDQFGKTKVHASGCAYYGQ 88

Query: 88  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYLRDVRECQAKA 147
           P PPAPC CPLRQAWGSLDALIGRLRAAYEESG +PE+NPFA+ A+R+YLR+VR+ QAKA
Sbjct: 89  PSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAPESNPFAARAVRIYLREVRDAQAKA 148

Query: 148 RGIPYKKKKKKTTTTNQ 165
           RGIPY+KKK+K T   Q
Sbjct: 149 RGIPYEKKKRKRTQQQQ 165

[Close]

BLAST of CmoCh11G019690 vs. ExPASy Swiss-Prot
Match: A2Y5N0 (Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.9e-59
Identity = 108/161 (67.08%), Postives = 126/161 (78.26%), Query Frame = 0


Query: 13  GSSSTSSPQPGGSIP---------SRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVL 72
           G+ + +  QP    P         SRYESQKRRDWNTF QYL+N RPP+ L+ CS  HV+
Sbjct: 7   GADAQAQAQPVAQAPPAMQPMQQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVI 66

Query: 73  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSP 132
           EFL+YLDQFGKTKVH  GC +YGQP PPAPC CPLRQAWGSLDALIGRLRAAYEESG +P
Sbjct: 67  EFLKYLDQFGKTKVHASGCAYYGQPSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAP 126

Query: 133 ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQ 165
           E+NPFA+ A+R+YLR+VR+ QAKARGIPY+KKK+K T   Q
Sbjct: 127 ESNPFAARAVRIYLREVRDAQAKARGIPYEKKKRKRTQQQQ 167

[Close]

BLAST of CmoCh11G019690 vs. ExPASy TrEMBL
Match: A0A6J1EWG4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111437182 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.2e-100
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MSFEGATKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEGATKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGATKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 180
           GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

[Close]

BLAST of CmoCh11G019690 vs. ExPASy TrEMBL
Match: A0A6J1JNV9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111486170 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 2.7e-97
Identity = 175/179 (97.77%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MSFEGATKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEG +KDFSEGSSSTSSPQPGG IPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 180
           GSPETNPFASGAIRVYLRDVRECQAKARGIPY KKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTSMMHFVP 178

[Close]

BLAST of CmoCh11G019690 vs. ExPASy TrEMBL
Match: A0A1S3C1B9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo OX=3656 GN=LOC103495500 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.9e-83
Identity = 157/188 (83.51%), Postives = 166/188 (88.30%), Query Frame = 0


Query: 1   MSFEGA-TKDFSEGSSSTS--SPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60
           MS EG+ +KDFSEGSSS+S      G + PSRYESQKRRDWNTFCQYLKNQRPPVPLSHC
Sbjct: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60

Query: 61  SCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120
           +CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE
Sbjct: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 ESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGA------EDS 180
           E+GGS ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT+T NQ+KG         S
Sbjct: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSTINQTKGGGHDDQDSSS 180

[Close]

BLAST of CmoCh11G019690 vs. ExPASy TrEMBL
Match: A0A5D3C6X1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003300 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.6e-82
Identity = 157/189 (83.07%), Postives = 167/189 (88.36%), Query Frame = 0


Query: 1   MSFEGA-TKDFSEGSSSTS--SPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60
           MS EG+ +KDFSEGSSS+S      G + PSRYESQKRRDWNTFCQYLKNQRPPVPLSHC
Sbjct: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60

Query: 61  SCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120
           +CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE
Sbjct: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 ESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTT-NQSKGA------ED 180
           E+GGS ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT++T NQ+KG         
Sbjct: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSSTINQTKGGGHDDQDSS 180

[Close]

BLAST of CmoCh11G019690 vs. ExPASy TrEMBL
Match: A0A0A0K2D1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 6.1e-81
Identity = 156/190 (82.11%), Postives = 166/190 (87.37%), Query Frame = 0


Query: 1   MSFEGA--TKDFSEGSSSTS--SPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60
           MS EG+  +KDFSEGSSS+S      G + PSRYESQKRRDWNTFCQYLKNQRPPVPLSH
Sbjct: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           C+CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGA-------E 180
           EE+GGS ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKK TT +Q+KG+        
Sbjct: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKK-TTISQTKGSGGHDDQDS 180

[Close]

BLAST of CmoCh11G019690 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 282.3 bits (721), Expect = 2.6e-76
Identity = 131/147 (89.12%), Postives = 136/147 (92.52%), Query Frame = 0


Query: 27  PSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKVHVQGCMFYG 86
           PSRYESQKRRDWNTF QYLKNQRPPVP+SHCSCNHVL+FLRYLDQFGKTKVHV GCMFYG
Sbjct: 23  PSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYG 82

Query: 87  QPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYLRDVRECQAK 146
           QPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPFASGAIRVYLR+VRECQAK
Sbjct: 83  QPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAK 142

Query: 147 ARGIPYKKKKKKTTTTNQSKGAEDSTS 174
           ARGIPYKKKKKK  T     G EDS+S
Sbjct: 143 ARGIPYKKKKKKKPTPEMGGGREDSSS 169

[Close]

BLAST of CmoCh11G019690 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 282.3 bits (721), Expect = 2.6e-76
Identity = 131/147 (89.12%), Postives = 136/147 (92.52%), Query Frame = 0


Query: 27  PSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKVHVQGCMFYG 86
           PSRYESQKRRDWNTF QYLKNQRPPVP+SHCSCNHVL+FLRYLDQFGKTKVHV GCMFYG
Sbjct: 23  PSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYG 82

Query: 87  QPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYLRDVRECQAK 146
           QPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPFASGAIRVYLR+VRECQAK
Sbjct: 83  QPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAK 142

Query: 147 ARGIPYKKKKKKTTTTNQSKGAEDSTS 174
           ARGIPYKKKKKK  T     G EDS+S
Sbjct: 143 ARGIPYKKKKKKKPTPEMGGGREDSSS 169

[Close]

BLAST of CmoCh11G019690 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 228.4 bits (581), Expect = 4.5e-60
Identity = 113/177 (63.84%), Postives = 133/177 (75.14%), Query Frame = 0


Query: 8   KDFSEGSSS-TSSPQPGGSIP---------SRYESQKRRDWNTFCQYLKNQRPPVPLSHC 67
           K  +EGSS   S PQP    P         SRYESQKRRDWNTFCQYL+NQ+PPV +S C
Sbjct: 9   KGIAEGSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVHISQC 68

Query: 68  SCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 127
             NH+L+FL+YLDQFGKTKVH+ GC+F+GQ EP   C CPL+QAWGSLDALIGRLRAA+E
Sbjct: 69  GSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLRAAFE 128

Query: 128 ESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKK-KKKKTTTTNQSKGAEDSTS 174
           E+GG PE NPFA G IRV+LR+VR+ QAKARG+PYKK KK+K     +S   ED T+
Sbjct: 129 ENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSHDGEDGTT 185

[Close]

BLAST of CmoCh11G019690 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-59
Identity = 109/153 (71.24%), Postives = 125/153 (81.70%), Query Frame = 0


Query: 6   ATKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEF 65
           AT   +  SSS+SS   G +  SRYE+QKRRDWNTF QYL+N RPP+ LS CS  HVLEF
Sbjct: 25  ATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEF 84

Query: 66  LRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPET 125
           LRYLDQFGKTKVH   C F+G P PPAPC CPLRQAWGSLDALIGRLRAA+EE+GGSPET
Sbjct: 85  LRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPET 144

Query: 126 NPFASGAIRVYLRDVRECQAKARGIPYKKKKKK 159
           NPF + A+R+YLR+VR+ QAKARGI Y+KKK+K
Sbjct: 145 NPFGARAVRLYLREVRDSQAKARGISYEKKKRK 177

[Close]

BLAST of CmoCh11G019690 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 225.7 bits (574), Expect = 2.9e-59
Identity = 105/150 (70.00%), Postives = 125/150 (83.33%), Query Frame = 0


Query: 13  GSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQF 72
           G S  SSP    + PSRYESQKRRDWNTF QYLKN +PP+ LS CS  HV+EFL+YLDQF
Sbjct: 18  GPSFVSSPP---ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQF 77

Query: 73  GKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGA 132
           GKTKVHV  C ++G  +PP+PC+CPL+QAWGSLDALIGRLRAAYEE+GG P++NPFA+ A
Sbjct: 78  GKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARA 137

Query: 133 IRVYLRDVRECQAKARGIPYKKKKKKTTTT 163
           +R+YLR+VRE QAKARGIPY+KKK+K   T
Sbjct: 138 VRIYLREVRESQAKARGIPYEKKKRKRPPT 164

The following BLAST results are available for this feature:

BLAST of CmoCh11G019690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	3.7e-75	89.12	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
A2XED8	2.8e-62	71.79	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	2.8e-62	71.79	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
Q6ATW6	4.4e-60	76.64	Protein G1-like8 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L8 PE=1 SV=1	[more]
A2Y5N0	2.9e-59	67.08	Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1	[more]

BLAST of CmoCh11G019690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWG4	1.2e-100	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JNV9	2.7e-97	97.77	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A1S3C1B9	3.9e-83	83.51	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
A0A5D3C6X1	5.6e-82	83.07	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0K2D1	6.1e-81	82.11	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 S...	[more]

BLAST of CmoCh11G019690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	2.6e-76	89.12	Protein of unknown function (DUF640)	[more]
AT2G42610.2	2.6e-76	89.12	Protein of unknown function (DUF640)	[more]
AT1G78815.1	4.5e-60	63.84	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.7e-59	71.24	Protein of unknown function (DUF640)	[more]
AT1G07090.1	2.9e-59	70.00	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 19..142 e-value: 1.7E-65 score: 218.9
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 29..156 score: 80.158211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR31165:SF72	DUF640 FAMILY PROTEIN	coord: 6..177
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 6..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G019690.1	CmoCh11G019690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus