CmoCh11G019330 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G019330
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionWound-responsive family protein
LocationCmo_Chr11: 13369686 .. 13369943 (+)
RNA-Seq ExpressionCmoCh11G019330
SyntenyCmoCh11G019330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCATCAAGAACAGCTTGGGTTGTCGCCGCCAGTGTCGGACTGGTGGAGGCTTTGAAAGATCAAGGGGTTTGCCGCTGGAATCACACGATTAGGTCGGTTCAGCAGTACGCTAAAAGCCATGTGAGATCTGCTTCCCAGGTCAAGAAGCTTTCTTCGCCGTCGTCTCCGGCGGTTTCCGACCAGAAATGGAAGCAGTCGGAGGAATCTTTGAGAACTGTCATGTTCTTGAGCTGTTGGGGTCCTAATAATTGA

mRNA sequence

ATGAGTTCATCAAGAACAGCTTGGGTTGTCGCCGCCAGTGTCGGACTGGTGGAGGCTTTGAAAGATCAAGGGGTTTGCCGCTGGAATCACACGATTAGGTCGGTTCAGCAGTACGCTAAAAGCCATGTGAGATCTGCTTCCCAGGTCAAGAAGCTTTCTTCGCCGTCGTCTCCGGCGGTTTCCGACCAGAAATGGAAGCAGTCGGAGGAATCTTTGAGAACTGTCATGTTCTTGAGCTGTTGGGGTCCTAATAATTGA

Coding sequence (CDS)

ATGAGTTCATCAAGAACAGCTTGGGTTGTCGCCGCCAGTGTCGGACTGGTGGAGGCTTTGAAAGATCAAGGGGTTTGCCGCTGGAATCACACGATTAGGTCGGTTCAGCAGTACGCTAAAAGCCATGTGAGATCTGCTTCCCAGGTCAAGAAGCTTTCTTCGCCGTCGTCTCCGGCGGTTTCCGACCAGAAATGGAAGCAGTCGGAGGAATCTTTGAGAACTGTCATGTTCTTGAGCTGTTGGGGTCCTAATAATTGA

Protein sequence

MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVKKLSSPSSPAVSDQKWKQSEESLRTVMFLSCWGPNN
Homology
BLAST of CmoCh11G019330 vs. ExPASy TrEMBL
Match: A0A6J1EY16 (uncharacterized protein LOC111437236 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437236 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.6e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVKKLSSPSSPAV 60
          MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVKKLSSPSSPAV
Sbjct: 8  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVKKLSSPSSPAV 67

Query: 61 SDQKWKQSEESLRTVMFLSCWGPNN 86
          SDQKWKQSEESLRTVMFLSCWGPNN
Sbjct: 68 SDQKWKQSEESLRTVMFLSCWGPNN 92

BLAST of CmoCh11G019330 vs. ExPASy TrEMBL
Match: A0A6J1ES53 (uncharacterized protein LOC111437236 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437236 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.6e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVKKLSSPSSPAV 60
          MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVKKLSSPSSPAV
Sbjct: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVKKLSSPSSPAV 60

Query: 61 SDQKWKQSEESLRTVMFLSCWGPNN 86
          SDQKWKQSEESLRTVMFLSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMFLSCWGPNN 85

BLAST of CmoCh11G019330 vs. ExPASy TrEMBL
Match: A0A6J1GJQ8 (uncharacterized protein LOC111454919 OS=Cucurbita moschata OX=3662 GN=LOC111454919 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 75/85 (88.24%), Postives = 80/85 (94.12%), Query Frame = 0

Query: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVKKLSSPSSPAV 60
          MSSSR AWVVAASVG+VEALKDQGVCRWNH I+SVQQYAK+HVRS SQ KKLSSPS+ AV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHAIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60

Query: 61 SDQKWKQSEESLRTVMFLSCWGPNN 86
          SDQKWKQSEESLRTVM+LSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

BLAST of CmoCh11G019330 vs. ExPASy TrEMBL
Match: A0A6J1HXF9 (uncharacterized protein LOC111468355 OS=Cucurbita maxima OX=3661 GN=LOC111468355 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.7e-34
Identity = 75/85 (88.24%), Postives = 80/85 (94.12%), Query Frame = 0

Query: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVKKLSSPSSPAV 60
          MSSSR AWVVAASVG+VEALKDQGVCRWNHTI+SVQQYAK+HVRS SQ KKLSS S+ AV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60

Query: 61 SDQKWKQSEESLRTVMFLSCWGPNN 86
          SDQKWKQSEESLRTVM+LSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

BLAST of CmoCh11G019330 vs. ExPASy TrEMBL
Match: A0A5D3C714 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003720 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.0e-33
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVKKLSSPSSPAV 60
          MS SR  WVVAASVG+VEALKDQG+CRWNHTIRS+QQYAK+HVRS SQ KKLSSPS+ AV
Sbjct: 1  MSCSRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAV 60

Query: 61 SDQKWKQSEESLRTVMFLSCWGPNN 86
          SD +WKQSEESLRTVM+LSCWGPNN
Sbjct: 61 SDHRWKQSEESLRTVMYLSCWGPNN 85

BLAST of CmoCh11G019330 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-22
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 0

Query: 1  MSSSRTAWVVAASVGLVEALKDQ-GVCRWNHTIRSVQQYAKSHVRSASQVKKLSSPSSPA 60
          MSS+   W+VAAS+G VEALKDQ GVCRWN+ IRS  QY ++++RS SQ KKLSS S   
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query: 61 VSDQKWKQSEESLRTVMFLSCWGPN 85
           +  K KQ+EESLRTVM+LSCWGP+
Sbjct: 61 TN--KTKQAEESLRTVMYLSCWGPS 83

BLAST of CmoCh11G019330 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-21
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 0

Query: 1  MSSSRTAWVVAASVGLVEALKDQ-GVCRWNHTIRSVQQYAKSHVRSASQVKKLSSPSSPA 60
          MSS+  AW VA S+G VEALKDQ G+CRWN+ +RSV Q+ +++VRS SQ K+ SS S  A
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 V-----SDQKWKQSEESLRTVMFLSCWGPN 85
                  +K K++EESLRTVM+LSCWGPN
Sbjct: 61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

BLAST of CmoCh11G019330 vs. TAIR 10
Match: AT4G33560.1 (Wound-responsive family protein )

HSP 1 Score: 52.4 bits (124), Expect = 2.1e-07
Identity = 33/88 (37.50%), Postives = 47/88 (53.41%), Query Frame = 0

Query: 2  SSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVKKLSSP--SSPA 61
          +  + +W VA ++  VE LKDQGV RWN+  R + + A + VR+ +   + S P  SS A
Sbjct: 3  AGKQASWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSA 62

Query: 62 VSDQKWKQS----EESLRTVMFLSCWGP 84
           S +    S    E S    M LSC+GP
Sbjct: 63 TSIRSKPLSTTPFETSFEKAMGLSCFGP 90

BLAST of CmoCh11G019330 vs. TAIR 10
Match: AT4G05070.1 (Wound-responsive family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.9e-04
Identity = 27/66 (40.91%), Postives = 37/66 (56.06%), Query Frame = 0

Query: 24 GVCRWNHTIRSVQQYAKSHVRSASQVKK-------LSSPSSPAVSDQKWKQSEESLRTVM 83
          GV   + T+RS  + + S  +SAS           L S    A + ++ +Q+EESLRTVM
Sbjct: 20 GVSGGDTTLRSAVKESVSSPQSASSSSSVRRLKGDLESSRFGAAASERLRQAEESLRTVM 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EY161.6e-39100.00uncharacterized protein LOC111437236 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1ES531.6e-39100.00uncharacterized protein LOC111437236 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1GJQ81.2e-3488.24uncharacterized protein LOC111454919 OS=Cucurbita moschata OX=3662 GN=LOC1114549... [more]
A0A6J1HXF92.7e-3488.24uncharacterized protein LOC111468355 OS=Cucurbita maxima OX=3661 GN=LOC111468355... [more]
A0A5D3C7145.0e-3383.53Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT4G10265.11.4e-2263.53Wound-responsive family protein [more]
AT4G10270.12.6e-2157.78Wound-responsive family protein [more]
AT4G33560.12.1e-0737.50Wound-responsive family protein [more]
AT4G05070.12.9e-0440.91Wound-responsive family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 10..83
e-value: 3.0E-31
score: 108.2
IPR022251Protein of unknown function wound-inducedPANTHERPTHR33090DUF3774 DOMAIN PROTEIN-RELATEDcoord: 1..84
NoneNo IPR availablePANTHERPTHR33090:SF50FAMILY PROTEIN, PUTATIVE-RELATEDcoord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G019330.1CmoCh11G019330.1mRNA