CmoCh11G019320 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G019320
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionWound-responsive family protein
LocationCmo_Chr11: 13367955 .. 13368224 (+)
RNA-Seq ExpressionCmoCh11G019320
SyntenyCmoCh11G019320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTCCTCAATTAGATCAGCTTGGGTTGTAGCTGCCAGTGTCGGCGTTGTTGAGGCCCTAAAGGATCAAGGGATTTGCCGGTGGAATAACGTCATAAGATCGGCGCAATTCTACGCCAAAAACCATGTTGGGTCACTTTCTCAGGCCAAGAAGTTTTCCTCCTCCTCCTCCTCCGCCGCCGCCGTGGCTTCCGGCAAGCAGCAGAATCAGTCGGAGGAATCTCTGAGGACGGTCATGTACCTCAGCTGTTGGGGTCCTAATAATTGA

mRNA sequence

ATGAGCTCCTCAATTAGATCAGCTTGGGTTGTAGCTGCCAGTGTCGGCGTTGTTGAGGCCCTAAAGGATCAAGGGATTTGCCGGTGGAATAACGTCATAAGATCGGCGCAATTCTACGCCAAAAACCATGTTGGGTCACTTTCTCAGGCCAAGAAGTTTTCCTCCTCCTCCTCCTCCGCCGCCGCCGTGGCTTCCGGCAAGCAGCAGAATCAGTCGGAGGAATCTCTGAGGACGGTCATGTACCTCAGCTGTTGGGGTCCTAATAATTGA

Coding sequence (CDS)

ATGAGCTCCTCAATTAGATCAGCTTGGGTTGTAGCTGCCAGTGTCGGCGTTGTTGAGGCCCTAAAGGATCAAGGGATTTGCCGGTGGAATAACGTCATAAGATCGGCGCAATTCTACGCCAAAAACCATGTTGGGTCACTTTCTCAGGCCAAGAAGTTTTCCTCCTCCTCCTCCTCCGCCGCCGCCGTGGCTTCCGGCAAGCAGCAGAATCAGTCGGAGGAATCTCTGAGGACGGTCATGTACCTCAGCTGTTGGGGTCCTAATAATTGA

Protein sequence

MSSSIRSAWVVAASVGVVEALKDQGICRWNNVIRSAQFYAKNHVGSLSQAKKFSSSSSSAAAVASGKQQNQSEESLRTVMYLSCWGPNN
Homology
BLAST of CmoCh11G019320 vs. ExPASy TrEMBL
Match: A0A6J1HW06 (uncharacterized protein LOC111468356 OS=Cucurbita maxima OX=3661 GN=LOC111468356 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.3e-26
Identity = 70/89 (78.65%), Postives = 76/89 (85.39%), Query Frame = 0

Query: 1  MSSSIRSAWVVAASVGVVEALKDQGICRWNNVIRSAQFYAKNHVGSLSQAKKFSSSSSSA 60
          MSSS R A +VAASVGVVEALKDQGICRWN++IRSA  YAK+HVGS+SQAKKF    SSA
Sbjct: 1  MSSSTR-ALIVAASVGVVEALKDQGICRWNHLIRSAHHYAKSHVGSISQAKKF----SSA 60

Query: 61 AAVASGKQQNQSEESLRTVMYLSCWGPNN 90
           A A GKQ +QSEESLRTVMYLSCWGPNN
Sbjct: 61 VAPAPGKQLHQSEESLRTVMYLSCWGPNN 84

BLAST of CmoCh11G019320 vs. ExPASy TrEMBL
Match: A0A6J1GKT9 (uncharacterized protein LOC111454920 OS=Cucurbita moschata OX=3662 GN=LOC111454920 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.4e-25
Identity = 69/89 (77.53%), Postives = 74/89 (83.15%), Query Frame = 0

Query: 1  MSSSIRSAWVVAASVGVVEALKDQGICRWNNVIRSAQFYAKNHVGSLSQAKKFSSSSSSA 60
          MSSS R A +VAASVGVVEALKDQGICRWN+ IRSA  YAKNHVGS+SQAKKF    S+A
Sbjct: 1  MSSSTR-ALIVAASVGVVEALKDQGICRWNHFIRSAHHYAKNHVGSISQAKKF----SAA 60

Query: 61 AAVASGKQQNQSEESLRTVMYLSCWGPNN 90
             A GKQ +QSEESLRTVMYLSCWGPNN
Sbjct: 61 VPPAPGKQLHQSEESLRTVMYLSCWGPNN 84

BLAST of CmoCh11G019320 vs. ExPASy TrEMBL
Match: I3SKC5 (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.1e-25
Identity = 67/93 (72.04%), Postives = 76/93 (81.72%), Query Frame = 0

Query: 1  MSSSIRSAWVVAASVGVVEALKDQGICRWNNVIRSAQFYAKNHVGSLSQAKKFSSSSSSA 60
          M SS   AW VAASVGVVEALKDQG+CRWN+VIRSAQ + KNHV SLSQAKK SSSSSS+
Sbjct: 1  MMSSASRAWTVAASVGVVEALKDQGLCRWNSVIRSAQHHVKNHVRSLSQAKKLSSSSSSS 60

Query: 61 AAVAS----GKQQNQSEESLRTVMYLSCWGPNN 90
          A V++     ++  +SEESLRTVMYLSCWGPNN
Sbjct: 61 AMVSNRSLKEEEAKKSEESLRTVMYLSCWGPNN 93

BLAST of CmoCh11G019320 vs. ExPASy TrEMBL
Match: A0A6J1D1Q0 (uncharacterized protein LOC111016790 OS=Momordica charantia OX=3673 GN=LOC111016790 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.3e-25
Identity = 67/87 (77.01%), Postives = 74/87 (85.06%), Query Frame = 0

Query: 3  SSIRSAWVVAASVGVVEALKDQGICRWNNVIRSAQFYAKNHVGSLSQAKKFSSSSSSAAA 62
          SS R  WVVAASVGVVEALKDQGICRWN+ IRSAQ YAK+HV S+SQAKK SS S++A +
Sbjct: 2  SSGRRGWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSHVRSVSQAKKLSSPSAAAVS 61

Query: 63 VASGKQQNQSEESLRTVMYLSCWGPNN 90
          V S K+  QSEESLRTVMYLSCWGPNN
Sbjct: 62 V-SDKKLKQSEESLRTVMYLSCWGPNN 87

BLAST of CmoCh11G019320 vs. ExPASy TrEMBL
Match: A0A0A0K3P5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046670 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 9.0e-25
Identity = 66/87 (75.86%), Postives = 69/87 (79.31%), Query Frame = 0

Query: 3  SSIRSAWVVAASVGVVEALKDQGICRWNNVIRSAQFYAKNHVGSLSQAKKFSSSSSSAAA 62
          S  R  WVVAASVGVVEALKDQGICRWN+ IRS Q YAKNHV S+SQAKK SS S   AA
Sbjct: 2  SCCRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPS---AA 61

Query: 63 VASGKQQNQSEESLRTVMYLSCWGPNN 90
            S  + NQSEESLRTVMYLSCWGPNN
Sbjct: 62 AVSDHKWNQSEESLRTVMYLSCWGPNN 85

BLAST of CmoCh11G019320 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 102.1 bits (253), Expect = 2.4e-22
Identity = 54/89 (60.67%), Postives = 68/89 (76.40%), Query Frame = 0

Query: 3  SSIRSAWVVAASVGVVEALKDQ-GICRWNNVIRSAQFYAKNHVGSLSQAKKFSSSSSSAA 62
          SS   AW VA S+G VEALKDQ G+CRWN ++RS   + +N+V S+SQ K+FSSSS SAA
Sbjct: 2  SSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAA 61

Query: 63 AVASGKQQ--NQSEESLRTVMYLSCWGPN 89
            +SG+ +   ++EESLRTVMYLSCWGPN
Sbjct: 62 VTSSGESEKAKKAEESLRTVMYLSCWGPN 90

BLAST of CmoCh11G019320 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-20
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 3  SSIRSAWVVAASVGVVEALKDQ-GICRWNNVIRSAQFYAKNHVGSLSQAKKFSSSSSSAA 62
          SS    W+VAAS+G VEALKDQ G+CRWN VIRSA  Y +N++ S+SQAKK SSSS    
Sbjct: 2  SSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSS---- 61

Query: 63 AVASGKQQNQSEESLRTVMYLSCWGPN 89
           +    +  Q+EESLRTVMYLSCWGP+
Sbjct: 62 -IDYTNKTKQAEESLRTVMYLSCWGPS 83

BLAST of CmoCh11G019320 vs. TAIR 10
Match: AT4G33560.1 (Wound-responsive family protein )

HSP 1 Score: 47.4 bits (111), Expect = 7.1e-06
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 0

Query: 1  MSSSIRSAWVVAASVGVVEALKDQGICRWNNVIRSAQFYAKNHVGSLSQAKKFS--SSSS 60
          M++  +++W VA ++  VE LKDQG+ RWN + R     A   V +++   + S  +SSS
Sbjct: 1  MNAGKQASWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSS 60

Query: 61 SAAAVASGK-QQNQSEESLRTVMYLSCWGP 88
          SA ++ S        E S    M LSC+GP
Sbjct: 61 SATSIRSKPLSTTPFETSFEKAMGLSCFGP 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HW066.3e-2678.65uncharacterized protein LOC111468356 OS=Cucurbita maxima OX=3661 GN=LOC111468356... [more]
A0A6J1GKT92.4e-2577.53uncharacterized protein LOC111454920 OS=Cucurbita moschata OX=3662 GN=LOC1114549... [more]
I3SKC54.1e-2572.04Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
A0A6J1D1Q05.3e-2577.01uncharacterized protein LOC111016790 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A0A0K3P59.0e-2575.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046670 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G10270.12.4e-2260.67Wound-responsive family protein [more]
AT4G10265.11.3e-2060.92Wound-responsive family protein [more]
AT4G33560.17.1e-0635.56Wound-responsive family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 11..87
e-value: 2.3E-31
score: 108.6
IPR022251Protein of unknown function wound-inducedPANTHERPTHR33090DUF3774 DOMAIN PROTEIN-RELATEDcoord: 1..88
NoneNo IPR availablePANTHERPTHR33090:SF56WOUND-RESPONSIVE FAMILY PROTEINcoord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G019320.1CmoCh11G019320.1mRNA