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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTGTTATGTGGGTAAAGCTACAAAGATCTTCATCTTCATTGTCACCGTTTTGGTGGTTCTTGGCCTTGTTCTAGCCTTTGGAGTCTTCCGCCACAGCCTCCAAAAACCCCACAAGTGCCTCGGAGATTCCTGTTTTTCTCCTCCAACCGCCTTCCCCAACCCCAATTCCGTCCCTTCCGGCAGCGCCGCCTCCAATCAGCCGCAGAACCCACCAAAACCACCGGATTCCAATCCTAACCCACCACCCCAAAATCCATTTCCGGCTTCTCCGCCTCCGCCTGACGTTGCTTCTCCACCTCCGCCTGCTACCATCCCAACTCCCTTACCACCACCGCCCCCGCAATCCCAATCTCCGCCTCCTCCAGAAACCGCAGCGGCGGCGCCGTTAACTCCGCCCAGTCCAACATCTGTGAGTCCGGATCCAATGGATGCTCAGTTGCGATCCTCGATTCCTAAGACCACTAAGAAGTTCTGA mRNA sequence ATGTGTTATGTGGGTAAAGCTACAAAGATCTTCATCTTCATTGTCACCGTTTTGGTGGTTCTTGGCCTTGTTCTAGCCTTTGGAGTCTTCCGCCACAGCCTCCAAAAACCCCACAAGTGCCTCGGAGATTCCTGTTTTTCTCCTCCAACCGCCTTCCCCAACCCCAATTCCGTCCCTTCCGGCAGCGCCGCCTCCAATCAGCCGCAGAACCCACCAAAACCACCGGATTCCAATCCTAACCCACCACCCCAAAATCCATTTCCGGCTTCTCCGCCTCCGCCTGACGTTGCTTCTCCACCTCCGCCTGCTACCATCCCAACTCCCTTACCACCACCGCCCCCGCAATCCCAATCTCCGCCTCCTCCAGAAACCGCAGCGGCGGCGCCGTTAACTCCGCCCAGTCCAACATCTGTGAGTCCGGATCCAATGGATGCTCAGTTGCGATCCTCGATTCCTAAGACCACTAAGAAGTTCTGA Coding sequence (CDS) ATGTGTTATGTGGGTAAAGCTACAAAGATCTTCATCTTCATTGTCACCGTTTTGGTGGTTCTTGGCCTTGTTCTAGCCTTTGGAGTCTTCCGCCACAGCCTCCAAAAACCCCACAAGTGCCTCGGAGATTCCTGTTTTTCTCCTCCAACCGCCTTCCCCAACCCCAATTCCGTCCCTTCCGGCAGCGCCGCCTCCAATCAGCCGCAGAACCCACCAAAACCACCGGATTCCAATCCTAACCCACCACCCCAAAATCCATTTCCGGCTTCTCCGCCTCCGCCTGACGTTGCTTCTCCACCTCCGCCTGCTACCATCCCAACTCCCTTACCACCACCGCCCCCGCAATCCCAATCTCCGCCTCCTCCAGAAACCGCAGCGGCGGCGCCGTTAACTCCGCCCAGTCCAACATCTGTGAGTCCGGATCCAATGGATGCTCAGTTGCGATCCTCGATTCCTAAGACCACTAAGAAGTTCTGA Protein sequence MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPSGSAASNQPQNPPKPPDSNPNPPPQNPFPASPPPPDVASPPPPATIPTPLPPPPPQSQSPPPPETAAAAPLTPPSPTSVSPDPMDAQLRSSIPKTTKKF
Homology
BLAST of CmoCh11G019160 vs. ExPASy TrEMBL
Match: A0A6J1ERB2 (sulfated surface glycoprotein 185-like OS=Cucurbita moschata OX=3662 GN=LOC111437094 PE=4 SV=1) HSP 1 Score: 279.3 bits (713), Expect = 1.0e-71 Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query: 1 MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS
Sbjct: 1 MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
Query: 61 GSAASNQPQNPPKPPDSNPNPPPQNPFPASPPPPDVASPPPPATIPTPLPPPPPQSQSPP 120
GSAASNQPQNPPKPPDSNPNPPPQNPFPASPPPPDVASPPPPATIPTPLPPPPPQSQSPP
Sbjct: 61 GSAASNQPQNPPKPPDSNPNPPPQNPFPASPPPPDVASPPPPATIPTPLPPPPPQSQSPP 120
Query: 121 PPETAAAAPLTPPSPTSVSPDPMDAQLRSSIPKTTKKF 159
PPETAAAAPLTPPSPTSVSPDPMDAQLRSSIPKTTKKF
Sbjct: 121 PPETAAAAPLTPPSPTSVSPDPMDAQLRSSIPKTTKKF 158
BLAST of CmoCh11G019160 vs. ExPASy TrEMBL
Match: A0A6J1JG03 (sulfated surface glycoprotein 185-like OS=Cucurbita maxima OX=3661 GN=LOC111486559 PE=4 SV=1) HSP 1 Score: 271.2 bits (692), Expect = 2.8e-69 Identity = 154/158 (97.47%), Postives = 156/158 (98.73%), Query Frame = 0
Query: 1 MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
MCYVGKATKIFIFIVT+LVVLGLVLAFGVFRHSLQKPHKCL DSCFSPPTAFPNPNSVPS
Sbjct: 1 MCYVGKATKIFIFIVTILVVLGLVLAFGVFRHSLQKPHKCLRDSCFSPPTAFPNPNSVPS 60
Query: 61 GSAASNQPQNPPKPPDSNPNPPPQNPFPASPPPPDVASPPPPATIPTPLPPPPPQSQSPP 120
GSAASNQPQNPPKPPDSNPNPPPQNPFPASPPPPDVASPPPPATIPTPLPPPPPQSQSPP
Sbjct: 61 GSAASNQPQNPPKPPDSNPNPPPQNPFPASPPPPDVASPPPPATIPTPLPPPPPQSQSPP 120
Query: 121 PPETAAAAPLTPPSPTSVSPDPMDAQLRSSIPKTTKKF 159
PPETAAAAPLTPPS TSVSPDPM+AQLRSSIPKTTKKF
Sbjct: 121 PPETAAAAPLTPPSTTSVSPDPMEAQLRSSIPKTTKKF 158
BLAST of CmoCh11G019160 vs. ExPASy TrEMBL
Match: A0A6J1GM63 (sulfated surface glycoprotein 185-like OS=Cucurbita moschata OX=3662 GN=LOC111455518 PE=4 SV=1) HSP 1 Score: 193.0 bits (489), Expect = 9.7e-46 Identity = 128/177 (72.32%), Postives = 131/177 (74.01%), Query Frame = 0
Query: 1 MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
MCYVGKATKIFIFIVTVLVVLGLVL FG RH LQK HKC G+SCFSPP FPNPNS
Sbjct: 1 MCYVGKATKIFIFIVTVLVVLGLVLGFGFMRHGLQKSHKCSGNSCFSPPVVFPNPNSATP 60
Query: 61 GSA----ASNQPQNPPKPPDSNPNPPPQNPF----------PASPPPPDV--ASPPPPAT 120
G A ASNQPQNPP PPDSNPNPPPQNP PASPPPPDV +PPPP T
Sbjct: 61 GGAAPISASNQPQNPPNPPDSNPNPPPQNPIPAFPPPSEATPASPPPPDVIPTTPPPPDT 120
Query: 121 IPTPLPPPP---PQSQSPPPPETAAAAPLTPPSPTSVSPDPMDAQLRSSIPKTTKKF 159
IP PLPPPP P SQSPPPPET A+ PLTPPS T VSP PM QLRSSI KT KKF
Sbjct: 121 IPNPLPPPPPLLPASQSPPPPETEASPPLTPPSTTPVSPGPMHVQLRSSIRKTNKKF 177
BLAST of CmoCh11G019160 vs. ExPASy TrEMBL
Match: A0A6J1HW34 (vegetative cell wall protein gp1-like OS=Cucurbita maxima OX=3661 GN=LOC111468063 PE=4 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 1.7e-42 Identity = 127/194 (65.46%), Postives = 129/194 (66.49%), Query Frame = 0
Query: 1 MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
MCYVGKATKIFIFIVTVLVVLGLVL FG RH LQK HKC G+SCFSPP FPNPNS
Sbjct: 1 MCYVGKATKIFIFIVTVLVVLGLVLGFGFMRHGLQKSHKCSGNSCFSPPVVFPNPNSATP 60
Query: 61 GSA----ASNQPQNPPKPPDSNPNPPPQNPF--------------------PASPPPPDV 120
G A ASNQPQNPP PPDSNPNPPPQNP PASPPPPDV
Sbjct: 61 GGAAPISASNQPQNPPNPPDSNPNPPPQNPIPAFPPPSEATPAFPPPSDATPASPPPPDV 120
Query: 121 ------------ASPPPPATIPTPLPPPPPQSQSPPPPETAAAAPLTPPSPTSVSPDPMD 159
SPPPP TIP PL PP P SQSPPPPET A+ PLTPPS T VSP PM
Sbjct: 121 IPTTPPSPDVIPTSPPPPDTIPNPL-PPLPASQSPPPPETEASPPLTPPSTTPVSPGPMH 180
BLAST of CmoCh11G019160 vs. ExPASy TrEMBL
Match: A0A6J1C2B8 (proline-rich receptor-like protein kinase PERK2 OS=Momordica charantia OX=3673 GN=LOC111007732 PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 2.7e-40 Identity = 117/168 (69.64%), Postives = 123/168 (73.21%), Query Frame = 0
Query: 1 MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
MCYVGKATKIFIFIVTVLVVLGLVL FG RH LQK HKC G+SCFSPP FP+PNS P
Sbjct: 1 MCYVGKATKIFIFIVTVLVVLGLVLGFGFLRHGLQKSHKCSGNSCFSPPDVFPDPNSAPP 60
Query: 61 GSA----ASNQPQNPPKPPDSNPNPPPQNPFPASPPPPD--VASPPPPATIPTPLPPPPP 120
G A ASNQP N P P DSNPNPPPQNP PA+PPPPD ASPPPP TI PLPPPPP
Sbjct: 61 GGAAPISASNQPGNSPTPTDSNPNPPPQNPIPATPPPPDAVTASPPPPDTIVNPLPPPPP 120
Query: 121 QS----QSPPPPETAAAAPLTPPSPTSVSPDPMDAQLRSSIPKTTKKF 159
QSPPPP T A P TPPS T V+P PM +QLRSSI K + F
Sbjct: 121 PPPQGYQSPPPPVTEAPPPFTPPSTTPVTPGPMHSQLRSSIRKRDENF 168
BLAST of CmoCh11G019160 vs. TAIR 10
Match: AT3G22070.1 (proline-rich family protein ) HSP 1 Score: 68.6 bits (166), Expect = 5.3e-12 Identity = 80/181 (44.20%), Postives = 94/181 (51.93%), Query Frame = 0
Query: 1 MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPP----------- 60
+CYVGKATKIFIFIVTV+ V+GLV+AFGV R + H C GD C S
Sbjct: 2 LCYVGKATKIFIFIVTVVFVIGLVVAFGVLR---RHSHHCSGDYCSSSTDPSSSSSSSSS 61
Query: 61 ------TAFPNPNSVPSGSAASNQP---QNPPKPPDS------NPNPP-----PQNPFPA 120
T FPNPN P+ N P +PP P DS +PNPP P P P+
Sbjct: 62 STSPFITPFPNPNPNPN----PNPPVLGSSPPSPTDSSSSTSISPNPPAPIVNPNPPPPS 121
Query: 121 SPPPPDVASPPPPATIPTPLPPPPPQS---QSPPPPETAAAAPLTPPSPTSVSPDPMDAQ 148
+P PP SPPPP T PPPP PPP +A+ PLTPPS SP P+ A+
Sbjct: 122 TPNPPPEFSPPPPDLDTTTAPPPPSTDIPIPPPPPAPVSASPPLTPPSSVVTSPAPVHAK 175
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1ERB2 | 1.0e-71 | 100.00 | sulfated surface glycoprotein 185-like OS=Cucurbita moschata OX=3662 GN=LOC11143... | [more] |
| A0A6J1JG03 | 2.8e-69 | 97.47 | sulfated surface glycoprotein 185-like OS=Cucurbita maxima OX=3661 GN=LOC1114865... | [more] |
| A0A6J1GM63 | 9.7e-46 | 72.32 | sulfated surface glycoprotein 185-like OS=Cucurbita moschata OX=3662 GN=LOC11145... | [more] |
| A0A6J1HW34 | 1.7e-42 | 65.46 | vegetative cell wall protein gp1-like OS=Cucurbita maxima OX=3661 GN=LOC11146806... | [more] |
| A0A6J1C2B8 | 2.7e-40 | 69.64 | proline-rich receptor-like protein kinase PERK2 OS=Momordica charantia OX=3673 G... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G22070.1 | 5.3e-12 | 44.20 | proline-rich family protein | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PRINTS | PR01217 | PRICHEXTENSN | coord: 47..59
score: 44.62
coord: 101..122
score: 49.09
coord: 89..101
score: 30.77
coord: 67..83
score: 38.82 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 68..139 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 48..158 |
| None | No IPR available | PANTHER | PTHR36036:SF1 | PROLINE-RICH FAMILY PROTEIN | coord: 1..147 |
| IPR040277 | Uncharacterized protein Os04g0629400-like | PANTHER | PTHR36036 | PROLINE-RICH FAMILY PROTEIN | coord: 1..147 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
|
