CmoCh11G019030 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G019030
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L6
LocationCmo_Chr11: 13224272 .. 13226903 (-)
RNA-Seq ExpressionCmoCh11G019030
SyntenyCmoCh11G019030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCTCCTCTCACAGCAGACCATATAACTGGTTCTGTCAAACTGGGTGTTCACTGTAATAGGCTATGGCTTCCACGCTATCCATCCCTTTTCAAACCAGGTATAACTCCTAATTTTGCTCTAATGATTGTCTTTCTGGGTTCAAGCCTATTAGTGGCCATTGGTAGACTTCGTATTTTATGATTATAAAATTTTCTGAACAAGCTCGGAAGTTCGTCTTAATTGGGTTCCCTTTCTAACTGTGTAGACGTTCTACTCTTACATATTGCATTTGTGGAGTGTGAAGTCTCGAATAGACCATAATGGTCAGCAAAGGTTTTTCCTTTTGCGTTCAACTTGTTCGTCTTAGTGCACATTTCCTTGGGATGTGAATTTGGGGGTTTCCGGTCATCGTTATCTTCTTTTATCTTGCCAAGCCTCAGAGTTGAGTTTTTGGTTTTCCTGATATGAGTCAGCCGGTCTGGAGATTATTGGAGGCTACAGTGCTCGCTATTTGGTTGCTTTAGAAGTTGTCGTACTTTGAGGATATCTTTCCTAGACCTTTGGAAACTTTTTTGGAGAACCATCCTCAATGTATCTAGATGATTTTCTAATTCTAGGAATTTTTTGAAATTATTTCTATTTCATATTCAAGACTTCAAGTCAATTGGAAAATTTCTTGAAACTTATCAGCTGACTGAAGTTATGTCTTCCATTTGGGTTTAATTATGAATTAGAAAATTATCTTTAATTTCTTTGTCGTGTTTTCTTAGAGAGACGCTCTCCTAAAAACGTGAAATTTTCTACTGGTCATTAAGTCATTAAGGTGTGTAAATTACACGGATGGAATTTAGAGGAAGTGTCCTTCCATGTTCCTCAATTCTAGTTGTGTTTGTATGTTGTCCTTACACTGTGGCTGTATGGTACAAAACAAGTTCTGCCATACCACCACCAATGTGGAGATTTCGATTCTCTGCTGTTTGAATATGTTATTTAGTGCTAAACTATTACACTGTCCTTTGATTGACTTTTGTGTGTTTTGAACCCTTCAGCCATCACTAACAATGGACGTCTACACATTACCTTTCTTTTCTGCTATAGACTGGGCTCCTTATAGTTGGCTTAGAGAGTGTGTCAAGCATAGAGTTTGTTCAATGTTAGTCGTGGTTGTCTTTTATTTAATCATTAAGCTCTTTTTTGTAAGAAGGAAACGTTCTTAAATTTGAAACCATTTTCCTTATTGTGGCTCAGCAATTTTCGGTCTACTTTTTTGGGAGAGAAAAATGGATTCTCTGCTTCTACAATGCCTGTATCTCATATTGTTCGCTTGAGGAAGACTATTGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACATTACAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAGCTTTCACTCCTTTATCCACGAGAAGTGAAGATTGAGAGGGATGATTCAGGGATCTTAAGGGTTAAGAAGGCACTGGAGACTAGGAGAGCCAACCAAATGCATGGGCTTTTCAGGTAACCTCCACCTAATTTAATTTACAATATTTTCACAGTAACCGATTAAGTTTAATCTTCTGAAACATTTAGCTTTTGTTTTTCTTCCTCTTAAGTTTTAGTTTACATGGATCACTTCCTATATGTATCTTCTCCAAAATTTGGTTGCCTCCTATGAAGATGCCTACTTGCCTCGCTAATCAAGTTGGTCATCTTTTTCATAAATTATGATCTGAAAAATGCTTTTATGGATGAGAATACTAACGGAGTGGCCAACTCTAGATATTCCCTCCTTTCTAATGATTATCTGTGGACTGCTAGAAAGAAACCAACTAAAATATCTTAAAATTCTGAAAACCCAAAACCACTTCATGCTATGAATGCAAACAACCAGCCATTGTTCCTTCATTTGTAATACAGATGAATGATGTCTGATGGAAAAAGAGTAATAAATGATGTACTCTGAGAAAATGCAGCTGTCGTGTCATATATGACCATTTCAACTGATTTATTCAGGACCCTTACAGACAATATGGTGGTAGGAGTGTCCAAGGGGTTTGAAAAGAAACTTCAATTGGTAGGTGTTGGTTATCGAGCGATGTTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCTGACGGGCTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACCGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGACCTCCAGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAGTTGTCAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAGTGATGGTTCGTTATTCATTGTTGGTTTTTCTCTCTTTTTGAAATATGTACTAGTCTTTCTAGAATCAGAAAGGATTATTGGCATCATAATTTATTAGAGTTCATTTTTTTTCCTTCTCCCTTTTCTTATTAAATTTTCAGTTTAATATCATCATCACTTTTCAGTTCCTACCACATTTTTATCAGTTGGAAAAATGGCATCGAACTCCTAAAGATCGCCATCTAGTTTATACTTGCGCATGTAGCATGGACTCGGTTTTCTTCCA

mRNA sequence

AGCCTCCTCTCACAGCAGACCATATAACTGGTTCTGTCAAACTGGGTGTTCACTGTAATAGGCTATGGCTTCCACGCTATCCATCCCTTTTCAAACCAGCAATTTTCGGTCTACTTTTTTGGGAGAGAAAAATGGATTCTCTGCTTCTACAATGCCTGTATCTCATATTGTTCGCTTGAGGAAGACTATTGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACATTACAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAGCTTTCACTCCTTTATCCACGAGAAGTGAAGATTGAGAGGGATGATTCAGGGATCTTAAGGGTTAAGAAGGCACTGGAGACTAGGAGAGCCAACCAAATGCATGGGCTTTTCAGGACCCTTACAGACAATATGGTGGTAGGAGTGTCCAAGGGGTTTGAAAAGAAACTTCAATTGGTAGGTGTTGGTTATCGAGCGATGTTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCTGACGGGCTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACCGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGACCTCCAGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAGTTGTCAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAGTGATGGTTCGTTATTCATTGTTGGTTTTTCTCTCTTTTTGAAATATGTACTAGTCTTTCTAGAATCAGAAAGGATTATTGGCATCATAATTTATTAGAGTTCATTTTTTTTCCTTCTCCCTTTTCTTATTAAATTTTCAGTTTAATATCATCATCACTTTTCAGTTCCTACCACATTTTTATCAGTTGGAAAAATGGCATCGAACTCCTAAAGATCGCCATCTAGTTTATACTTGCGCATGTAGCATGGACTCGGTTTTCTTCCA

Coding sequence (CDS)

ATGGCTTCCACGCTATCCATCCCTTTTCAAACCAGCAATTTTCGGTCTACTTTTTTGGGAGAGAAAAATGGATTCTCTGCTTCTACAATGCCTGTATCTCATATTGTTCGCTTGAGGAAGACTATTGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACATTACAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAGCTTTCACTCCTTTATCCACGAGAAGTGAAGATTGAGAGGGATGATTCAGGGATCTTAAGGGTTAAGAAGGCACTGGAGACTAGGAGAGCCAACCAAATGCATGGGCTTTTCAGGACCCTTACAGACAATATGGTGGTAGGAGTGTCCAAGGGGTTTGAAAAGAAACTTCAATTGGTAGGTGTTGGTTATCGAGCGATGTTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCTGACGGGCTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACCGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGACCTCCAGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAGTTGTCAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAGTGA

Protein sequence

MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Homology
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BLAST of CmoCh11G019030 vs. ExPASy Swiss-Prot
Match: O23049 (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 1.0e-93
Identity = 172/226 (76.11%), Postives = 196/226 (86.73%), Query Frame = 0 

Query: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60
           MAS+L   FQ    RS FLG++N F  S+ P + +    KTIECKESRIGKQPI VPSNV
Sbjct: 1   MASSLVSSFQP---RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNV 60

Query: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120
           TI L+GQDLKVKGPLGEL+L YPREV++ +++SG LRVKK +ETRRANQMHGLFRTLTDN
Sbjct: 61  TIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180
           MVVGVSKGFEKKL LVGVGYRA ++GK+LVLNLGFSHPV+M IPD L+VKVEENTRITVS
Sbjct: 121 MVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           GYDK  IGQFAA++R+WRPPEPYKGKGVKY+DE+VRRKEGKAGKKK
Sbjct: 181 GYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

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BLAST of CmoCh11G019030 vs. ExPASy Swiss-Prot
Match: P82193 (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 334.0 bits (855), Expect = 1.4e-90
Identity = 167/222 (75.23%), Postives = 193/222 (86.94%), Query Frame = 0 

Query: 5   LSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITL 64
           +S+P   S+ +S FLG K   S S +PV+ I   RK+++CKESRIGKQPI VP+NV I +
Sbjct: 1   MSLPL-PSHMKSVFLGMKVEISTS-VPVTRIGFWRKSVDCKESRIGKQPITVPANVAIAM 60

Query: 65  QGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVG 124
           +GQDLKVKGPLGELS+ YPREV +E+ +SG LRV+KA+ETRRANQMHGLFRTLTDNMVVG
Sbjct: 61  EGQDLKVKGPLGELSITYPREVLVEKQESGFLRVRKAVETRRANQMHGLFRTLTDNMVVG 120

Query: 125 VSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDK 184
           VSKGFEKKLQLVGVGYRA +EGKDL+L+LGFSHPVRMAIPD LQVKVEENT++TVSG DK
Sbjct: 121 VSKGFEKKLQLVGVGYRATVEGKDLILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDK 180

Query: 185 CAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
             +GQFAA+IR WRPPEPYKGKGV+Y DEVVRRKEGKAGKKK
Sbjct: 181 SVVGQFAATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGKKK 220

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BLAST of CmoCh11G019030 vs. ExPASy Swiss-Prot
Match: B0C1E7 (50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplF PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.8e-51
Identity = 105/179 (58.66%), Postives = 133/179 (74.30%), Query Frame = 0 

Query: 47  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRR 106
           SRIGK PI +P  V +T++GQ + VKGP GELS     EV IE+ D+ ++ V +  E+R 
Sbjct: 2   SRIGKVPIPIPDKVNVTIKGQAVTVKGPKGELSREITPEVAIEQADN-LVTVTRRNESRI 61

Query: 107 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDG 166
           A Q HGL RTL  NMV GVSKGFEKKLQ+ GVGYRA ++G++L+LN+G+S+PV +  P+G
Sbjct: 62  ARQRHGLSRTLIANMVEGVSKGFEKKLQIQGVGYRAQVQGRNLILNVGYSNPVTIEPPEG 121

Query: 167 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKK 226
           +QV VE NT + VSG +K  +G  AA IR  RPPEPYKGKG++YADE VRRK GKAGKK
Sbjct: 122 VQVAVESNTNVIVSGINKEVVGNTAARIRAVRPPEPYKGKGIRYADEYVRRKVGKAGKK 179

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BLAST of CmoCh11G019030 vs. ExPASy Swiss-Prot
Match: B7KI01 (50S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rplF PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 8.1e-51
Identity = 101/179 (56.42%), Postives = 128/179 (71.51%), Query Frame = 0 

Query: 47  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRR 106
           SRIGK+PI +P+ VT+ + G  + VKGP GEL    P  V +E+D+ G+LRV +  ++R 
Sbjct: 2   SRIGKRPITIPNKVTVNIDGSHVAVKGPKGELQRTLPTLVIVEQDE-GVLRVVRQDDSRT 61

Query: 107 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDG 166
           A Q HGL RTL  NMV GVSKGFEK+L++ GVGYRA  +G  L LN+G+S PV M +P G
Sbjct: 62  ARQRHGLCRTLVSNMVEGVSKGFEKRLEIQGVGYRAAAQGSKLTLNVGYSKPVEMDMPSG 121

Query: 167 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKK 226
           + V VE+NT IT++G DK  +G  AA IR  RPPEPYKGKG++Y  EVVRRK GK GKK
Sbjct: 122 IGVAVEKNTEITITGIDKEIVGNVAAKIRAVRPPEPYKGKGIRYKGEVVRRKAGKTGKK 179

[Close]
BLAST of CmoCh11G019030 vs. ExPASy Swiss-Prot
Match: B1WQS5 (50S ribosomal protein L6 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rplF PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 5.2e-50
Identity = 98/179 (54.75%), Postives = 127/179 (70.95%), Query Frame = 0 

Query: 47  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRR 106
           SRIGK+PI +P+ VTI ++GQ + VKGP G L L  P EV + ++   +  V++  ++R 
Sbjct: 2   SRIGKKPIPLPNKVTIDIKGQHIAVKGPKGSLELDLPSEVTVNQEGETV-EVQRVDDSRT 61

Query: 107 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDG 166
           A + HGLFRTL  NM+ GVS+GFEK+L + GVGYRA  +G  L LN+G+S PV M +P G
Sbjct: 62  ARERHGLFRTLVANMIQGVSQGFEKRLNIQGVGYRAQAQGSKLTLNVGYSKPVEMTMPQG 121

Query: 167 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKK 226
           + V VE NT++ VSG DK  +G  AA IR  RPPEPYKGKG++Y DE VRRK GKAGKK
Sbjct: 122 INVAVENNTQVVVSGIDKEIVGNIAAKIRGVRPPEPYKGKGIRYQDEYVRRKAGKAGKK 179

[Close]
BLAST of CmoCh11G019030 vs. ExPASy TrEMBL
Match: A0A6J1ER61 (50S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437054 PE=3 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 6.9e-122
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0 

Query: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60
           MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV
Sbjct: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60

Query: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120
           TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN
Sbjct: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180
           MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS
Sbjct: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]
BLAST of CmoCh11G019030 vs. ExPASy TrEMBL
Match: A0A6J1JIK5 (50S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486127 PE=3 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 1.3e-120
Identity = 223/226 (98.67%), Postives = 225/226 (99.56%), Query Frame = 0 

Query: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60
           MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV
Sbjct: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60

Query: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120
           TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN
Sbjct: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180
           MV+GVSKGFEKKLQLVGVGYRA+LEGKDLVLNLGFSHPVRMAIPDGLQV VEENTRITVS
Sbjct: 121 MVIGVSKGFEKKLQLVGVGYRAILEGKDLVLNLGFSHPVRMAIPDGLQVMVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]
BLAST of CmoCh11G019030 vs. ExPASy TrEMBL
Match: A0A6J1C3Z5 (50S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008030 PE=3 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.7e-115
Identity = 214/226 (94.69%), Postives = 219/226 (96.90%), Query Frame = 0 

Query: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60
           MASTL+IPFQTSNFRSTFLGEKNGFS STMPV HI  LRKTIECKESRIGKQPIQVPSNV
Sbjct: 1   MASTLTIPFQTSNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNV 60

Query: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120
            I LQGQDLKVKGPLGELS+LYPREVKIER+DSGILRVKKA+ETRRA QMHGLFRTLTDN
Sbjct: 61  IIALQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180
           MVVGVS+GFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS
Sbjct: 121 MVVGVSRGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]
BLAST of CmoCh11G019030 vs. ExPASy TrEMBL
Match: A0A6J1ERI9 (50S ribosomal protein L6, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437054 PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.2e-115
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0 

Query: 13  NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK 72
           NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK
Sbjct: 32  NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK 91

Query: 73  GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK 132
           GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK
Sbjct: 92  GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK 151

Query: 133 LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAA 192
           LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAA
Sbjct: 152 LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAA 211

Query: 193 SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 212 SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 245

[Close]
BLAST of CmoCh11G019030 vs. ExPASy TrEMBL
Match: A0A6J1JKX3 (50S ribosomal protein L6, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486127 PE=3 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.1e-114
Identity = 211/214 (98.60%), Postives = 213/214 (99.53%), Query Frame = 0 

Query: 13  NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK 72
           NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK
Sbjct: 32  NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK 91

Query: 73  GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK 132
           GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMV+GVSKGFEKK
Sbjct: 92  GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVIGVSKGFEKK 151

Query: 133 LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAA 192
           LQLVGVGYRA+LEGKDLVLNLGFSHPVRMAIPDGLQV VEENTRITVSGYDKCAIGQFAA
Sbjct: 152 LQLVGVGYRAILEGKDLVLNLGFSHPVRMAIPDGLQVMVEENTRITVSGYDKCAIGQFAA 211

Query: 193 SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 212 SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 245

[Close]
BLAST of CmoCh11G019030 vs. TAIR 10
Match: AT1G05190.1 (Ribosomal protein L6 family )

HSP 1 Score: 344.4 bits (882), Expect = 7.1e-95
Identity = 172/226 (76.11%), Postives = 196/226 (86.73%), Query Frame = 0 

Query: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60
           MAS+L   FQ    RS FLG++N F  S+ P + +    KTIECKESRIGKQPI VPSNV
Sbjct: 1   MASSLVSSFQP---RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNV 60

Query: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120
           TI L+GQDLKVKGPLGEL+L YPREV++ +++SG LRVKK +ETRRANQMHGLFRTLTDN
Sbjct: 61  TIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180
           MVVGVSKGFEKKL LVGVGYRA ++GK+LVLNLGFSHPV+M IPD L+VKVEENTRITVS
Sbjct: 121 MVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           GYDK  IGQFAA++R+WRPPEPYKGKGVKY+DE+VRRKEGKAGKKK
Sbjct: 181 GYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]
BLAST of CmoCh11G019030 vs. TAIR 10
Match: AT2G18400.1 (ribosomal protein L6 family protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-20
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 0 

Query: 129 FEKKLQLVGVGYRAMLE--GKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCA 188
           F + L++VGVGY+A  E  G+ L L LG+SH V +A+P  ++V   +N  +  +G DK  
Sbjct: 5   FFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQR 64

Query: 189 IGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGK 225
           + QFAA++R  +PPEPYKGKG+ Y DEVV++K+GK  K
Sbjct: 65  VHQFAATVRSCKPPEPYKGKGIMYTDEVVKKKQGKKSK 102

The following BLAST results are available for this feature:
BLAST of CmoCh11G019030 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O230491.0e-9376.1150S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 ... [more]
P821931.4e-9075.2350S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=... [more]
B0C1E72.8e-5158.6650S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 G... [more]
B7KI018.1e-5156.4250S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN... [more]
B1WQS55.2e-5054.7550S ribosomal protein L6 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) O... [more]
BLAST of CmoCh11G019030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ER616.9e-122100.0050S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662... [more]
A0A6J1JIK51.3e-12098.6750S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1C3Z51.7e-11594.6950S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A6J1ERI92.2e-115100.0050S ribosomal protein L6, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662... [more]
A0A6J1JKX34.1e-11498.6050S ribosomal protein L6, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 G... [more]
BLAST of CmoCh11G019030 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G05190.17.1e-9576.11Ribosomal protein L6 family [more]
AT2G18400.11.5e-2047.96ribosomal protein L6 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019906Ribosomal protein L6, bacterial-typePRINTSPR00059RIBOSOMALL6coord: 117..142
score: 61.66
coord: 145..161
score: 49.15
coord: 187..208
score: 66.42
IPR019906Ribosomal protein L6, bacterial-typeTIGRFAMTIGR03654TIGR03654coord: 47..222
e-value: 4.5E-71
score: 236.2
IPR019906Ribosomal protein L6, bacterial-typeHAMAPMF_01365_BRibosomal_L6_Bcoord: 46..222
score: 36.980522
IPR020040Ribosomal protein L6, alpha-beta domainPFAMPF00347Ribosomal_L6coord: 56..128
e-value: 2.1E-14
score: 54.0
coord: 136..210
e-value: 3.0E-19
score: 69.5
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 45..128
e-value: 8.0E-26
score: 92.3
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 129..226
e-value: 4.3E-41
score: 141.0
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 47..128
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 129..222
IPR000702Ribosomal protein L6PANTHERPTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9coord: 1..226
NoneNo IPR availablePANTHERPTHR11655:SF38BNAA10G03220D PROTEINcoord: 1..226
IPR002358Ribosomal protein L6, conserved sitePROSITEPS00525RIBOSOMAL_L6_1coord: 200..208

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G019030.1CmoCh11G019030.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome