CmoCh11G018950 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G018950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor MYB101
LocationCmo_Chr11: 13164661 .. 13164942 (+)
RNA-Seq ExpressionCmoCh11G018950
SyntenyCmoCh11G018950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCTCTAGAGGAGATGGAATCAATGGTTGACGATGACCTAATGAGCCTACTCAGCAACTTTCAAACGGGAATGCCAGTGCCGGAGTTGTACCCCAATAACAGCAACGATGATCTTGGCATCAACACACACAACGGCTTGTCGTTGTGTGAAACGAATGGCAACCGAGACGAAGATGAGCAACGACCAAACGTAGGAACAACATCGGCGGTAGCATCACCCGTCCTCGAATGGAGCCTTGGGTCATCTTGTTGGAACAACATGCCGAGTATTTGCTAG

mRNA sequence

ATGGAACCTCTAGAGGAGATGGAATCAATGGTTGACGATGACCTAATGAGCCTACTCAGCAACTTTCAAACGGGAATGCCAGTGCCGGAGTTGTACCCCAATAACAGCAACGATGATCTTGGCATCAACACACACAACGGCTTGTCGTTGTGTGAAACGAATGGCAACCGAGACGAAGATGAGCAACGACCAAACGTAGGAACAACATCGGCGGTAGCATCACCCGTCCTCGAATGGAGCCTTGGGTCATCTTGTTGGAACAACATGCCGAGTATTTGCTAG

Coding sequence (CDS)

ATGGAACCTCTAGAGGAGATGGAATCAATGGTTGACGATGACCTAATGAGCCTACTCAGCAACTTTCAAACGGGAATGCCAGTGCCGGAGTTGTACCCCAATAACAGCAACGATGATCTTGGCATCAACACACACAACGGCTTGTCGTTGTGTGAAACGAATGGCAACCGAGACGAAGATGAGCAACGACCAAACGTAGGAACAACATCGGCGGTAGCATCACCCGTCCTCGAATGGAGCCTTGGGTCATCTTGTTGGAACAACATGCCGAGTATTTGCTAG

Protein sequence

MEPLEEMESMVDDDLMSLLSNFQTGMPVPELYPNNSNDDLGINTHNGLSLCETNGNRDEDEQRPNVGTTSAVASPVLEWSLGSSCWNNMPSIC
Homology
[Close]
BLAST of CmoCh11G018950 vs. ExPASy TrEMBL
Match: A0A6J1ESA8 (transcription factor MYB101-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437117 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.0e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1   MEPLEEMESMVDDDLMSLLSNFQTGMPVPELYPNNSNDDLGINTHNGLSLCETNGNRDED 60
           MEPLEEMESMVDDDLMSLLSNFQTGMPVPELYPNNSNDDLGINTHNGLSLCETNGNRDED
Sbjct: 409 MEPLEEMESMVDDDLMSLLSNFQTGMPVPELYPNNSNDDLGINTHNGLSLCETNGNRDED 468

Query: 61  EQRPNVGTTSAVASPVLEWSLGSSCWNNMPSIC 94
           EQRPNVGTTSAVASPVLEWSLGSSCWNNMPSIC
Sbjct: 469 EQRPNVGTTSAVASPVLEWSLGSSCWNNMPSIC 501

[Close]
BLAST of CmoCh11G018950 vs. ExPASy TrEMBL
Match: A0A6J1EXM1 (transcription factor MYB101-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437117 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.0e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1   MEPLEEMESMVDDDLMSLLSNFQTGMPVPELYPNNSNDDLGINTHNGLSLCETNGNRDED 60
           MEPLEEMESMVDDDLMSLLSNFQTGMPVPELYPNNSNDDLGINTHNGLSLCETNGNRDED
Sbjct: 345 MEPLEEMESMVDDDLMSLLSNFQTGMPVPELYPNNSNDDLGINTHNGLSLCETNGNRDED 404

Query: 61  EQRPNVGTTSAVASPVLEWSLGSSCWNNMPSIC 94
           EQRPNVGTTSAVASPVLEWSLGSSCWNNMPSIC
Sbjct: 405 EQRPNVGTTSAVASPVLEWSLGSSCWNNMPSIC 437

[Close]
BLAST of CmoCh11G018950 vs. ExPASy TrEMBL
Match: A0A6J1JKG1 (transcription factor MYB101-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485996 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.5e-42
Identity = 87/93 (93.55%), Postives = 89/93 (95.70%), Query Frame = 0 

Query: 1   MEPLEEMESMVDDDLMSLLSNFQTGMPVPELYPNNSNDDLGINTHNGLSLCETNGNRDED 60
           MEPLEEM+SMVDDDLMSLLSNFQT MPVPELYPNNSNDDLGINTH+ LSL ETNGNRDED
Sbjct: 345 MEPLEEMDSMVDDDLMSLLSNFQTEMPVPELYPNNSNDDLGINTHDDLSLRETNGNRDED 404

Query: 61  EQRPNVGTTSAVASPVLEWSLGSSCWNNMPSIC 94
           EQRPNVGTTS VASPVLEWSLGSSCWNNMPSIC
Sbjct: 405 EQRPNVGTTSTVASPVLEWSLGSSCWNNMPSIC 437

[Close]
BLAST of CmoCh11G018950 vs. ExPASy TrEMBL
Match: A0A6J1JMG3 (transcription factor MYB101-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485996 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.5e-42
Identity = 87/93 (93.55%), Postives = 89/93 (95.70%), Query Frame = 0 

Query: 1   MEPLEEMESMVDDDLMSLLSNFQTGMPVPELYPNNSNDDLGINTHNGLSLCETNGNRDED 60
           MEPLEEM+SMVDDDLMSLLSNFQT MPVPELYPNNSNDDLGINTH+ LSL ETNGNRDED
Sbjct: 409 MEPLEEMDSMVDDDLMSLLSNFQTEMPVPELYPNNSNDDLGINTHDDLSLRETNGNRDED 468

Query: 61  EQRPNVGTTSAVASPVLEWSLGSSCWNNMPSIC 94
           EQRPNVGTTS VASPVLEWSLGSSCWNNMPSIC
Sbjct: 469 EQRPNVGTTSTVASPVLEWSLGSSCWNNMPSIC 501

[Close]
BLAST of CmoCh11G018950 vs. ExPASy TrEMBL
Match: A0A1S3C0R5 (transcription factor MYB86 OS=Cucumis melo OX=3656 GN=LOC103495698 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.8e-30
Identity = 70/93 (75.27%), Postives = 79/93 (84.95%), Query Frame = 0 

Query: 1   MEPLEEMESMVDDDLMSLLSNFQTGMPVPELYPNNSNDDLGINTHNGLSLCETNGNRDED 60
           MEPLEEM+SM DDDLMSLL+NFQ+GMPVPE YP +S+DDL +N  NG SLCE+NGN   D
Sbjct: 416 MEPLEEMDSMDDDDLMSLLNNFQSGMPVPEWYPGSSDDDLTMNMQNGPSLCESNGNPGGD 475

Query: 61  EQRPNVGTTSAVA-SPVLEWSLGSSCWNNMPSI 93
           EQ+ NV + SAVA SPVLEWSLGSSCWNNMPSI
Sbjct: 476 EQQQNVASPSAVASSPVLEWSLGSSCWNNMPSI 508

The following BLAST results are available for this feature:
BLAST of CmoCh11G018950 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G018950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ESA82.0e-46100.00transcription factor MYB101-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1EXM12.0e-46100.00transcription factor MYB101-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1JKG16.5e-4293.55transcription factor MYB101-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1JMG36.5e-4293.55transcription factor MYB101-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A1S3C0R59.8e-3075.27transcription factor MYB86 OS=Cucumis melo OX=3656 GN=LOC103495698 PE=4 SV=1[more]
BLAST of CmoCh11G018950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G018950.1CmoCh11G018950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048235 pollen sperm cell differentiation
biological_process GO:0009789 positive regulation of abscisic acid-activated signaling pathway
biological_process GO:0043068 positive regulation of programmed cell death
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:1990019 protein storage vacuole organization
biological_process GO:1901371 regulation of leaf morphogenesis
biological_process GO:0080092 regulation of pollen tube growth
biological_process GO:0009739 response to gibberellin
cellular_component GO:0005634 nucleus
cellular_component GO:0090406 pollen tube
molecular_function GO:0003700 DNA-binding transcription factor activity