CmoCh11G018660 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G018660
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionCalcium-binding EF-hand family protein
LocationCmo_Chr11: 12980621 .. 12981034 (+)
RNA-Seq ExpressionCmoCh11G018660
SyntenyCmoCh11G018660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGTGGAGATATTGGACAGTGCCACCATTGTCAACTTCGTCGAAGATGAGGCAGCCTTTGGTGCCTGCATAGGAGACCGGTTTGCTCACCTCGACACGAATCATGACGGTCTCCTTTCCTTTAGTGAGATGTTGAAGGAGTTGCAGAGCCTCAGGGTCATCGAGGCCGATTTTGGAATCGACGTGAAGCCTGATCCAGATGAGCTTTCTTCTGTCTATAGTTCTATGTTTTTGCAGTTTGATCGTAACTCGAGTGGAACGGTTGATCTGGATGAGTTTAAGGCTGAGAACAAAAGGATGATGCTAGCTATGGCTAATGGGATTGGAGCTTTACCTGTTCAAATGGTGCTAGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGAGAGAAGTTGCTATAATGACAACTTGA

mRNA sequence

ATGAGTGTGGAGATATTGGACAGTGCCACCATTGTCAACTTCGTCGAAGATGAGGCAGCCTTTGGTGCCTGCATAGGAGACCGGTTTGCTCACCTCGACACGAATCATGACGGTCTCCTTTCCTTTAGTGAGATGTTGAAGGAGTTGCAGAGCCTCAGGGTCATCGAGGCCGATTTTGGAATCGACGTGAAGCCTGATCCAGATGAGCTTTCTTCTGTCTATAGTTCTATGTTTTTGCAGTTTGATCGTAACTCGAGTGGAACGGTTGATCTGGATGAGTTTAAGGCTGAGAACAAAAGGATGATGCTAGCTATGGCTAATGGGATTGGAGCTTTACCTGTTCAAATGGTGCTAGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGAGAGAAGTTGCTATAATGACAACTTGA

Coding sequence (CDS)

ATGAGTGTGGAGATATTGGACAGTGCCACCATTGTCAACTTCGTCGAAGATGAGGCAGCCTTTGGTGCCTGCATAGGAGACCGGTTTGCTCACCTCGACACGAATCATGACGGTCTCCTTTCCTTTAGTGAGATGTTGAAGGAGTTGCAGAGCCTCAGGGTCATCGAGGCCGATTTTGGAATCGACGTGAAGCCTGATCCAGATGAGCTTTCTTCTGTCTATAGTTCTATGTTTTTGCAGTTTGATCGTAACTCGAGTGGAACGGTTGATCTGGATGAGTTTAAGGCTGAGAACAAAAGGATGATGCTAGCTATGGCTAATGGGATTGGAGCTTTACCTGTTCAAATGGTGCTAGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGAGAGAAGTTGCTATAATGACAACTTGA

Protein sequence

MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT
Homology
BLAST of CmoCh11G018660 vs. ExPASy TrEMBL
Match: A0A6J1ES35 (uncharacterized protein LOC111437060 OS=Cucurbita moschata OX=3662 GN=LOC111437060 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.0e-68
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG
Sbjct: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120

Query: 121 GSFLMKAVEREVAIMTT 138
           GSFLMKAVEREVAIMTT
Sbjct: 121 GSFLMKAVEREVAIMTT 137

BLAST of CmoCh11G018660 vs. ExPASy TrEMBL
Match: A0A6J1JN55 (uncharacterized protein LOC111486198 OS=Cucurbita maxima OX=3661 GN=LOC111486198 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.5e-66
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVEILDSATIVNFVEDEAAFGA IGDRFAHLDTNHDGLLS+SEMLKELQSLRVIEADFG
Sbjct: 1   MSVEILDSATIVNFVEDEAAFGAFIGDRFAHLDTNHDGLLSYSEMLKELQSLRVIEADFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120

Query: 121 GSFLMKAVEREVAIMTT 138
           GSFLMKAVEREVAIMTT
Sbjct: 121 GSFLMKAVEREVAIMTT 137

BLAST of CmoCh11G018660 vs. ExPASy TrEMBL
Match: A0A0A0KHT7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G418660 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.6e-55
Identity = 115/134 (85.82%), Postives = 123/134 (91.79%), Query Frame = 0

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVEILDSATIVNFVED+ AFGA I DRFAHLDTN DGLLS+SEML+EL +LRV E  FG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVKPDPDELSSVYSS+FLQFDR+SSGTVDLDEF+AE KRMMLAMANG+G LPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVEREVAI 135
           GSFLMKAVERE AI
Sbjct: 121 GSFLMKAVERETAI 134

BLAST of CmoCh11G018660 vs. ExPASy TrEMBL
Match: A0A6J1C5B4 (uncharacterized protein LOC111007532 OS=Momordica charantia OX=3673 GN=LOC111007532 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.8e-55
Identity = 115/135 (85.19%), Postives = 122/135 (90.37%), Query Frame = 0

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVEILDSATIVNFVEDEAAF A I DRFAHLDTNHDGLLS++EML+ELQSLRV E  FG
Sbjct: 1   MSVEILDSATIVNFVEDEAAFDAFIRDRFAHLDTNHDGLLSYTEMLRELQSLRVFEIHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVKPDPDELS+VYSS+FLQFD +SSG VDLDEFKAE KRMMLA ANG+G LPVQMVLEE
Sbjct: 61  IDVKPDPDELSTVYSSLFLQFDHDSSGKVDLDEFKAETKRMMLATANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVEREVAIM 136
           GSFLMKAVERE  IM
Sbjct: 121 GSFLMKAVERETTIM 135

BLAST of CmoCh11G018660 vs. ExPASy TrEMBL
Match: A0A5D3E445 (Calcium-binding EF-hand family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00260 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.6e-55
Identity = 114/134 (85.07%), Postives = 122/134 (91.04%), Query Frame = 0

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVEILDSATIVNFVED+ AFGA I DRFAHLDTNHDGLLS+SEML+EL +LRV E  FG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVKPDP+ELSSVYSS+FLQFD +SSGTVDLDEFKAE KRMML MANG+G LPVQMVLEE
Sbjct: 61  IDVKPDPEELSSVYSSLFLQFDHDSSGTVDLDEFKAETKRMMLDMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVEREVAI 135
           GSFLMKAVERE AI
Sbjct: 121 GSFLMKAVERETAI 134

BLAST of CmoCh11G018660 vs. TAIR 10
Match: AT2G44310.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 125.6 bits (314), Expect = 3.2e-29
Identity = 60/135 (44.44%), Postives = 99/135 (73.33%), Query Frame = 0

Query: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           M V ++D +T+ +FV+DE  F   + +RFA LD N DG+LS SE+ K  +S+R++E+ FG
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVL-- 120
           +DV    DEL+++Y S+F +FD + SG+VDL+EF++E K+++LA+A+G+G+ P+ MVL  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 121 EEGSFLMKAVEREVA 134
           ++ +FL KA + E +
Sbjct: 121 DDDNFLKKAADLEAS 135

BLAST of CmoCh11G018660 vs. TAIR 10
Match: AT1G54530.1 (Calcium-binding EF hand family protein )

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-09
Identity = 40/127 (31.50%), Postives = 69/127 (54.33%), Query Frame = 0

Query: 5   ILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVK 64
           ++ S T++ F+ D  +F +   D F  LD + +G+LS SE+ + L ++  +E+    +V 
Sbjct: 5   VITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVES----EVA 64

Query: 65  PDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEEGSFL 124
           P  DE  +VY+++F +F  +    +    F+     ++ AMA GIG  PV MV+     +
Sbjct: 65  PG-DETDNVYNAIFERFGED----LVPKNFRDLIAEILTAMARGIGNSPVIMVVHNDGLI 122

Query: 125 MKAVERE 132
           MKAV  E
Sbjct: 125 MKAVLHE 122

BLAST of CmoCh11G018660 vs. TAIR 10
Match: AT4G38810.2 (Calcium-binding EF-hand family protein )

HSP 1 Score: 55.1 bits (131), Expect = 5.2e-08
Identity = 35/125 (28.00%), Postives = 59/125 (47.20%), Query Frame = 0

Query: 4   EILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDV 63
           ++LD + IV  VE+E  F   +  +F  LD + DG LS +E+   +     I A  G+  
Sbjct: 13  QVLDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVAD---IGAALGLPA 72

Query: 64  KPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEEGSF 123
           +    +   +YS +  +F   S   V   EFK     ++L MA G+   P+ ++  +G  
Sbjct: 73  QGTSPDSDHIYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRMDGED 132

Query: 124 LMKAV 129
           L + V
Sbjct: 133 LSEFV 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1ES356.0e-68100.00uncharacterized protein LOC111437060 OS=Cucurbita moschata OX=3662 GN=LOC1114370... [more]
A0A6J1JN552.5e-6698.54uncharacterized protein LOC111486198 OS=Cucurbita maxima OX=3661 GN=LOC111486198... [more]
A0A0A0KHT72.6e-5585.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G418660 PE=4 SV=1[more]
A0A6J1C5B45.8e-5585.19uncharacterized protein LOC111007532 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A5D3E4457.6e-5585.07Calcium-binding EF-hand family protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
Match NameE-valueIdentityDescription
AT2G44310.13.2e-2944.44Calcium-binding EF-hand family protein [more]
AT1G54530.12.1e-0931.50Calcium-binding EF hand family protein [more]
AT4G38810.25.2e-0828.00Calcium-binding EF-hand family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 24..52
e-value: 1.4
score: 16.7
coord: 73..101
e-value: 4.1
score: 12.8
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 27..95
e-value: 2.2E-9
score: 37.6
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 69..104
score: 9.520128
NoneNo IPR availableGENE3D1.10.238.10coord: 23..104
e-value: 1.2E-11
score: 46.6
NoneNo IPR availablePANTHERPTHR34574CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATEDcoord: 1..133
NoneNo IPR availablePANTHERPTHR34574:SF10CALCIUM-BINDING EF-HAND FAMILY PROTEIN-LIKEcoord: 1..133
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 82..94
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 33..45
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 27..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G018660.1CmoCh11G018660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding