CmoCh11G018260 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G018260
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr11: 12780342 .. 12783458 (+)
RNA-Seq ExpressionCmoCh11G018260
SyntenyCmoCh11G018260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGAGTTTAGTTTCAAATTCGTCTCACAACTTTGCATTAATCTTTTCTACGGACAGGTCGTGGAATTATGAAAAATCTGTTCGTATGCTGAATGTTAAGGGTTTATGGAAATTTGCGCCAGTCGTGATGGTACTAGTATGCTGTGTTCTTCAGGGACGAAGGTTTTGATGGTAGAAACATTGATAAGACGTTTGAGAAGTGTAGGCGTTTGGAAGCTATGCAGGATGAAAGAGCTTCTGAAAACTGGGAATATTTGGAGAGAATTGGCATTCAAAAGAGGAAGCTTTGTGAGATTAAGCTCTCACAGCATTGGTTGGAGAAGGGAACGAAACATTTCTTATAAAGGTGTGGAAACTTCTCCTTAGTAGAAGCGTTTTAAAGCCTTCCTTATAAGGGTGTGGAAACCTCTCTGTTTTAAAATTGTGAGGCTGATGGTGATACGCAACGGGCCAAAGCGGACAATATCTACTAGTAGTGAGTTTGGGCTATTAGAAGTAGTATCAAAGCCAGACACCAAATGGTGTGCCAGCGAGGACGCTGGGCCTCCAAACAGGTGGATTATAAGATCCCACATTGGTTGGAGAAGAGAACAAAACATTTCTTACATGGGTGTGGAAACCTCTCTCTAGCAGATGCGTTTTAAAGCCGTGAGGCTGACAATGATACGTGATATGTCAAAACGGATAATATCTGCTAGTGTTTCATAAAAGTTTAAGAGTTTTATAACACCTGGATCGCAATGACATTCTTCCTTAATGCTGCATATGCAACGGTGTGTCCTTTGTTGTCGGCAAGAGAAGGATCTCCATCATCTTTTGTGTGGTTGCCAGTTTGCTTACTCCCCATGGAGTTGTTTTCTAGTGTGTTAGAGGTTGCAATGGTGTGTAATGGGGATTTGTTGCTCTTTGTTGGAGGAGATTATGATGAACTCTTCATTTCATGATAGAAGATTGAATGTTACTAAAATAGCTGTGTAATTGCTGGGAGTAGATAGAAGACGATAAGACTTAAAATGCTGGACTTGAATTGTTCTATAATCTGCAATTTAGGAAGCTGTTAAATGATCTTTGATTCATTAGAAAACATGTCAAAGGCTGTATCTGTAAAGCAAGAAAGATTGTACATTCAGTTGGCTATCTGGAAGCAGGGAGAGTAGGATGATTAGGATGTCGGAATCAACTTGATCGACCGTCTCGAGAATGTAGCTTGCTGAGTTGAACCCAGGTATACATATCCACATACAAGTGCTAGTGTATCATCAGAATCAACTTGATGGACCTCTCGGGACGTTGGGAGTTCGAACCCAGGTATACATATCCACATACAAGTGCTAGTGTATCATCAAAATCAACTTGATGGACCTCTCGGGACGTTGGGAGTTCGAACCCAGGTATACATATTCACATTACACACCACATATCTTAGTGAAAATAATAAAAACAATAAACAAATGATGTTGTCTACTCCAATTGGATGATGTAAGTTGCAGGGACTGAAGCACAGGACCAGCTATGGTGAAACTTCATCAAAGAGAGTTATTTGTGTTTGACAGTGAACTGAGATTGTTACTGGTGGCGGAGGTAGTGTTCATGGGAGGCCACATGAAGACTGGCTTGAATGGAGGTACACGAGGTGCAGGCAAAGCTCCATTTAAAATTTGGAGTATATCCTGAGTTTGTGGCCGTTCACTTGCCATGGGATGTGAACATGCCAACCCAAGTAGTAGAAGCCTCCTAGCTTCATCGACCACAATATCATCACCGAGCTGGTTATCGACTGCTTTTTCGATATGTCCTTCGCGATGTACCTTCCACACCCAATCAACTAAGGTATATTGATGTTGCTCGTCTTCCACAGGAGCTCCTGGTCTCCTGCCACAAACAATCTCAAGCACCACTGCCCCAAAACCATATACGTCGGATTCTGGAGTTGCCCTTCCTTCGTGGAAGCATTCAGGAGCAACATAACCCATTGTGCCTGCAACTCCTCCATGTTGGAGGTCTGCATAAGAGTTTCTTTCAGGGTCCAACGCTCTCGCAAGGCCGAAATCTCCTAGACGAGCATGGAAGTCGGAATCAAGTAAGATATTGCTTGATTTGATATCTCGGTGCAATACCTTCTGGTCGTACTCATTATGCAGGTAATGCAACGCTGATGCAACTCCTACAAGGATTTTATAGCGATGTCTCCAGTTGAGAACATTCTGGTCAGCAATGTCATACAGGTGATTCTCAAGGCTTCCATTAGGCATGAAATCATATACTAATAAAAGCTTCCCTTTCTCGTAGCACCACCCTGAACAAGTATTCAATGCATATTTTAGTACATTGGTTTGAAATTACACTAAACTACACAAATATATGCTCTATCACTCTCTTTGAGTTGAGTTAGAATTTGTGAGATCCACATTGGTTGGGGAGGAGAACGGAACACCCTTTATAAAGGTGTGGAAACCTTTCTCTAGCAGACACGTTTTAAAAACCTTGAGGGGTTGCCCGAAAGGGACAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGGGCCAGACACCAGGTGATGTGTTAGTGAGGAGGCTATTCCCCGAAAGGGGGTAGACATGAGGCGGCGTGCCAGTAAGGATGTTCGGCCACGAAGGAGGTGGATTTGGTAGGGGTCTCACATTGATTGGAGAAAAAAACGAGTGCCAGCGAGGACGCTGGGCTCTGAGGGGGGTAAATTGTGAGATCCCACATCGGTTAGGGAGAAACACCCTTTATAAGGGCGTGGAAACCTTTCTCAAGCAGACGCGATTTAAAAACCTTGAGGAGAAACCCGAAAGGGAAAGCCCAAAGAGAACAATATTTACTAGCGGTAGGCTTGGGCCGTTACAGAATTTTAGTGAAACCTCTCAATTACTGTCTTTTCTTTAGCAAATTATATATTTTGATGCGAAATTGGCAGAAGAATGGAAGTTTTACCTTCTAAACGGACAAGGTTCCTGTGGCGAAGACGGTGAATAATGGTGAGCTCGTCCAGAAAATCGCCTTTGCTCTTAATGCTGTCCCTGGAGAATTTCTTGACAGCAACTTCAAGCCTGGCAACAGAACTTGA

mRNA sequence

ATGCGGAGTTTAGTTTCAAATTCGTCTCACAACTTTGCATTAATCTTTTCTACGGACAGGTCGTGGAATTATGAAAAATCTGTTCGTATGCTGAATGTTAAGGGTTTATGGAAATTTGCGCCAGTCGTGATGAATCAACTTGATGGACCTCTCGGGACGTTGGGAGTTCGAACCCAGGGACTGAAGCACAGGACCAGCTATGGTGAAACTTCATCAAAGAGAGAGCTCCTGGTCTCCTGCCACAAACAATCTCAAGCACCACTGCCCCAAAACCATATACGTCGGATTCTGGAGTTGCCCTTCCTTCGTGGAAGCATTCAGGAGCAACATAACCCATTGTGCCTGCAACTCCTCCATGTTGGAGGTCTGCATAAGAGTTTCTTTCAGGGTCCAACGCTCTCGCAAGGCCGAAATCTCCTAGACGAGCATGGAAGTCGGAATCAAGTTCCTGTGGCGAAGACGGTGAATAATGGTGAGCTCGTCCAGAAAATCGCCTTTGCTCTTAATGCTGTCCCTGGAGAATTTCTTGACAGCAACTTCAAGCCTGGCAACAGAACTTGA

Coding sequence (CDS)

ATGCGGAGTTTAGTTTCAAATTCGTCTCACAACTTTGCATTAATCTTTTCTACGGACAGGTCGTGGAATTATGAAAAATCTGTTCGTATGCTGAATGTTAAGGGTTTATGGAAATTTGCGCCAGTCGTGATGAATCAACTTGATGGACCTCTCGGGACGTTGGGAGTTCGAACCCAGGGACTGAAGCACAGGACCAGCTATGGTGAAACTTCATCAAAGAGAGAGCTCCTGGTCTCCTGCCACAAACAATCTCAAGCACCACTGCCCCAAAACCATATACGTCGGATTCTGGAGTTGCCCTTCCTTCGTGGAAGCATTCAGGAGCAACATAACCCATTGTGCCTGCAACTCCTCCATGTTGGAGGTCTGCATAAGAGTTTCTTTCAGGGTCCAACGCTCTCGCAAGGCCGAAATCTCCTAGACGAGCATGGAAGTCGGAATCAAGTTCCTGTGGCGAAGACGGTGAATAATGGTGAGCTCGTCCAGAAAATCGCCTTTGCTCTTAATGCTGTCCCTGGAGAATTTCTTGACAGCAACTTCAAGCCTGGCAACAGAACTTGA

Protein sequence

MRSLVSNSSHNFALIFSTDRSWNYEKSVRMLNVKGLWKFAPVVMNQLDGPLGTLGVRTQGLKHRTSYGETSSKRELLVSCHKQSQAPLPQNHIRRILELPFLRGSIQEQHNPLCLQLLHVGGLHKSFFQGPTLSQGRNLLDEHGSRNQVPVAKTVNNGELVQKIAFALNAVPGEFLDSNFKPGNRT
Homology
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BLAST of CmoCh11G018260 vs. NCBI nr
Match: KAG7022805.1 (hypothetical protein SDJN02_16541, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214.2 bits (544), Expect = 9.9e-52
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 45  NQLDGPLGTLGVRTQGLKHRTSYGETSSKRELLVSCHKQSQAPLPQNHIRRILELPFLRG 104
           NQLDG LGTLGVRTQGLKHRTSYGETSSKRELLVSCHKQSQAPLPQNHIRRILELPFLRG
Sbjct: 1   NQLDGALGTLGVRTQGLKHRTSYGETSSKRELLVSCHKQSQAPLPQNHIRRILELPFLRG 60

Query: 105 SIQEQHNPLCLQLLHVGGLHKSFFQGPTLSQGRNLLDEHGSRNQV 150
           SIQEQHNPLCLQLLHVGGLHKSFFQGPTLSQGRNLLDEHGSRNQ+
Sbjct: 61  SIQEQHNPLCLQLLHVGGLHKSFFQGPTLSQGRNLLDEHGSRNQM 105

The following BLAST results are available for this feature:
BLAST of CmoCh11G018260 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G018260 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G018260 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022805.19.9e-5298.10hypothetical protein SDJN02_16541, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh11G018260 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G018260.1CmoCh11G018260.1mRNA