CmoCh11G017450 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G017450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	SKP1-like protein
Location	Cmo_Chr11: 12313607 .. 12315052 (+)
RNA-Seq Expression	CmoCh11G017450
Synteny	CmoCh11G017450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTCAGTTAGGGTTTCTCCATCCTCACATTCGAAAACAAACGTTCAAAAAAATCCCTTAATCCCTTACGCAATGTCTTCATCCAAGGTGATCGTTCTCAGGAGTTCTGACGGCGAAACTTTCCACATCGACGAAGCGGTGGCTCTCGAGTCTCAGACGATCAAGTACATGATCGAGGACGATTGCGCCGATACGGTCATCCCTGTGCCCAATGTCACCGGTTCCATTCTAGCTAGAGTGATTGAGTATTGCAAGAAGCATGTCGAGACCGATGCTAAGGATTCTAAAGCCCTCGATGATACTCTCAAAGCTTGGGACGCTGAATTTGTCAAGGTTGATCAGAATATCCTCTTTGATCTCATCTTGGTGAGTTCTCTGTTCTTCTTCTATTTCTATCTCTTTTTTTCGCTCATTATAACATAATTTGGGGCTTTTTGATCATTTGTGACATGTAAATTCAAGGTTTTATTGCGGAATTCTTTAATATCTCTGTCATTGTTGACTGTTATGTTCTTGTATTCGACATGTACAAATTGACTGTATATCACGAATTGTCTTTTGTTTTGATTATAATACGAAACTTAGTTAGTATGCGAACTTGCTTCCTTGTATAATATAAGCATGGAATTGCAGATTACTGTTAATTAGTCGATCATGATTCTTTAGAATGGCATATTTGATTCATGTCCAAATGTGCCTTTCCAGTGATAATCTTGAATTCACTTATAAATCCACTTATAGTGGCTTTGAAATTGTAAGATTACAAGGGTGAAAAGTGGTGTTAGCACTCTTCTAGAGCAGGAAGAGCAGGAGATTGTTGTTGTAAAGGGGGGAGATTGTTGGATGATAAAAGACTTAGGGAATGATCGTGTCTTTATAAACAAAGAATACTCTCTCCATTGGTATGAGGCCTCAAACAAAACCATGAAAGTTTAATCTCAAAGTGGACAATATCATACCATTGTGGAGAGTAGCTAATTTGGTTATTGACATGCAAATGGGTTGTCCTTGTTGATATCAATTTGGTTAGTGACATTCAAATGGGTTGTCCTGGTTGATATCAATTTGGTTATTGACGTTCAAATGGTTCTTGTTATCTGTGTTGGGGCTTAGGCATCACAAGATGTTTTAAATTACATGGTTTCTGTGTATATGGGTTTGCTTGTTCTTTTGTGGTGATGGATAACAATGGATGTGTACCCACCAAGCAGGCCGCTAACTATCTGGACATCAAGAGCCTGCTGGACCTGACATGCCAGACAGTGGCAGACATGATCAAGGGAAAGACCCCAGAAGAGATTCGAAAGACATTCAACATCAAGAACGATTTCACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTGAACATTCATTCATTCATTTCATCAACTGCTTCAATAGGATAGCCATTGATCTTAGTTAGTAG

mRNA sequence

CTGTCAGTTAGGGTTTCTCCATCCTCACATTCGAAAACAAACGTTCAAAAAAATCCCTTAATCCCTTACGCAATGTCTTCATCCAAGGTGATCGTTCTCAGGAGTTCTGACGGCGAAACTTTCCACATCGACGAAGCGGTGGCTCTCGAGTCTCAGACGATCAAGTACATGATCGAGGACGATTGCGCCGATACGGTCATCCCTGTGCCCAATGTCACCGGTTCCATTCTAGCTAGAGTGATTGAGTATTGCAAGAAGCATGTCGAGACCGATGCTAAGGATTCTAAAGCCCTCGATGATACTCTCAAAGCTTGGGACGCTGAATTTGTCAAGGTTGATCAGAATATCCTCTTTGATCTCATCTTGGCCGCTAACTATCTGGACATCAAGAGCCTGCTGGACCTGACATGCCAGACAGTGGCAGACATGATCAAGGGAAAGACCCCAGAAGAGATTCGAAAGACATTCAACATCAAGAACGATTTCACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTGAACATTCATTCATTCATTTCATCAACTGCTTCAATAGGATAGCCATTGATCTTAGTTAGTAG

Coding sequence (CDS)

ATGTCTTCATCCAAGGTGATCGTTCTCAGGAGTTCTGACGGCGAAACTTTCCACATCGACGAAGCGGTGGCTCTCGAGTCTCAGACGATCAAGTACATGATCGAGGACGATTGCGCCGATACGGTCATCCCTGTGCCCAATGTCACCGGTTCCATTCTAGCTAGAGTGATTGAGTATTGCAAGAAGCATGTCGAGACCGATGCTAAGGATTCTAAAGCCCTCGATGATACTCTCAAAGCTTGGGACGCTGAATTTGTCAAGGTTGATCAGAATATCCTCTTTGATCTCATCTTGGCCGCTAACTATCTGGACATCAAGAGCCTGCTGGACCTGACATGCCAGACAGTGGCAGACATGATCAAGGGAAAGACCCCAGAAGAGATTCGAAAGACATTCAACATCAAGAACGATTTCACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTGA

Protein sequence

MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYCKKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE

Homology

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BLAST of CmoCh11G017450 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-60
Identity = 117/159 (73.58%), Postives = 137/159 (86.16%), Query Frame = 0


Query: 3   SSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYCKK 62
           S+K IVL+SSDGE+F ++EAVALESQTI +M+EDDC D  +P+PNVT  ILA+VIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVETDAKDSKAL------DDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTV 122
           HVE  A  ++A+      DD LKAWDA+F+K+DQ  LF+LILAANYL+IK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CmoCh11G017450 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.0e-60
Identity = 121/171 (70.76%), Postives = 134/171 (78.36%), Query Frame = 0


Query: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60
           MS+ + I L+SSDGE F IDEAVALESQTIK+MIEDDC D  IP+PNVT  IL++VIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVETDAKD----------------SKALDDTLKAWDAEFVKVDQNILFDLILAANYLD 120
           K+HVE   K                 S + D+ LK WD+EF+KVDQ  LFDLILAANYL+
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CmoCh11G017450 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.4e-57
Identity = 118/166 (71.08%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 5   KVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYCKKHV 64
           K+I L+SSDGE F ++EAVA+ESQTI++MIEDDCAD  IP+PNV   IL++VIEYC KHV
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 67

Query: 65  E-TDAKDSKALDDT--------------LKAWDAEFVKVDQNILFDLILAANYLDIKSLL 124
               A  SKA DD               LK WDA+FVKVDQ  LFDLILAANYL+IK LL
Sbjct: 68  HAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGLL 127

Query: 125 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE+RRENQWAFE
Sbjct: 128 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of CmoCh11G017450 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.6e-56
Identity = 116/166 (69.88%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 6   VIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYCKKHVE 65
           +I LRS +G+ F + EAVA+ESQTI++MIED CADT IP+PNV+  IL++VIEYC KHVE
Sbjct: 10  MITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVE 69

Query: 66  T----------DA------KDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLL 125
                      DA      + +KA++D LK +DAEFVKVDQ+ LFDLILAANYL+IK LL
Sbjct: 70  ARGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLL 129

Query: 126 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 130 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 175

[Close]

BLAST of CmoCh11G017450 vs. ExPASy Swiss-Prot
Match: Q9LNT9 (SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.4e-54
Identity = 110/160 (68.75%), Postives = 132/160 (82.50%), Query Frame = 0


Query: 3   SSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYCKK 62
           + K+I+L+SSDGE+F I+EAVA++SQTIK+MIEDDCAD  IP+PNVTG+ILA+VIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVETDA-----KD--SKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQT 122
           HVE  A     KD    A +D LK WD+EFVKVDQ  LFDLILAANYL+I  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of CmoCh11G017450 vs. ExPASy TrEMBL
Match: A0A6J1EKE0 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435156 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.0e-79
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60
           MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC
Sbjct: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh11G017450 vs. ExPASy TrEMBL
Match: A0A0A0K4P4 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G012950 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.2e-70
Identity = 137/155 (88.39%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60
           MSSSK IVLRSSDGETF +DE VA+ESQTIK+MIEDDCADTVIP+PNVT +IL++VIEYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           K HVETD KDSK +DDTLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh11G017450 vs. ExPASy TrEMBL
Match: A0A5A7U3D8 (SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00540 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.7e-69
Identity = 135/155 (87.10%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60
           MSSSK IVLRSSDGETF +DE VA+ESQTIK+MIEDDC DTVIP+PNVT +IL++V+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           K HVETD KDSK +DDTLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh11G017450 vs. ExPASy TrEMBL
Match: A0A1S3BI15 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490282 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.7e-69
Identity = 135/155 (87.10%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60
           MSSSK IVLRSSDGETF +DE VA+ESQTIK+MIEDDC DTVIP+PNVT +IL++V+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           K HVETD KDSK +DDTLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh11G017450 vs. ExPASy TrEMBL
Match: A0A6J1C297 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111007712 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.0e-68
Identity = 134/155 (86.45%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60
           MSSSK IVL+SSDGETF ++EAVA+ESQTIK+MIEDDCAD VIP+PNV  +ILA+VIEYC
Sbjct: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           KKHVETD KDSKA+DD+LK WDAE+VKVDQN LFDLILAANYL+IK LLDLTCQTVADMI
Sbjct: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh11G017450 vs. NCBI nr
Match: XP_022928279.1 (SKP1-like protein 1A [Cucurbita moschata])

HSP 1 Score: 303.5 bits (776), Expect = 1.0e-78
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60
           MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC
Sbjct: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh11G017450 vs. NCBI nr
Match: XP_023529806.1 (SKP1-like protein 1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.1 bits (762), Expect = 4.3e-77
Identity = 152/155 (98.06%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60
           MSSSKVI+LRSSDGETFHIDEAVALESQTIK+MIEDDCADTVIPVPNVTGSILA VIEYC
Sbjct: 1   MSSSKVILLRSSDGETFHIDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAMVIEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh11G017450 vs. NCBI nr
Match: KAG6589016.1 (SKP1-like protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 296.2 bits (757), Expect = 1.6e-76
Identity = 151/155 (97.42%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60
           MSSSKVIVLRSSDGE FHIDEAVALESQTIK+MIEDDCADTVIPVPNVTGSILA+VIEYC
Sbjct: 1   MSSSKVIVLRSSDGEIFHIDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           KKHVETDAKDS ALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSNALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh11G017450 vs. NCBI nr
Match: KAG7015279.1 (SKP1-like protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 295.8 bits (756), Expect = 2.1e-76
Identity = 150/155 (96.77%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60
           MSSSK+IVLRSSDGE FH+DEAVALESQTIK+MIEDDCADTVIPVPNVTGSILA+VIEYC
Sbjct: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh11G017450 vs. NCBI nr
Match: XP_004144851.1 (SKP1-like protein 1B [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 1.5e-69
Identity = 137/155 (88.39%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60
           MSSSK IVLRSSDGETF +DE VA+ESQTIK+MIEDDCADTVIP+PNVT +IL++VIEYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60

Query: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120
           K HVETD KDSK +DDTLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CmoCh11G017450 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 233.8 bits (595), Expect = 9.3e-62
Identity = 117/159 (73.58%), Postives = 137/159 (86.16%), Query Frame = 0


Query: 3   SSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYCKK 62
           S+K IVL+SSDGE+F ++EAVALESQTI +M+EDDC D  +P+PNVT  ILA+VIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVETDAKDSKAL------DDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTV 122
           HVE  A  ++A+      DD LKAWDA+F+K+DQ  LF+LILAANYL+IK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CmoCh11G017450 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 231.9 bits (590), Expect = 3.5e-61
Identity = 121/171 (70.76%), Postives = 134/171 (78.36%), Query Frame = 0


Query: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60
           MS+ + I L+SSDGE F IDEAVALESQTIK+MIEDDC D  IP+PNVT  IL++VIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVETDAKD----------------SKALDDTLKAWDAEFVKVDQNILFDLILAANYLD 120
           K+HVE   K                 S + D+ LK WD+EF+KVDQ  LFDLILAANYL+
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CmoCh11G017450 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 213.0 bits (541), Expect = 1.7e-55
Identity = 110/160 (68.75%), Postives = 132/160 (82.50%), Query Frame = 0


Query: 3   SSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYCKK 62
           + K+I+L+SSDGE+F I+EAVA++SQTIK+MIEDDCAD  IP+PNVTG+ILA+VIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVETDA-----KD--SKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQT 122
           HVE  A     KD    A +D LK WD+EFVKVDQ  LFDLILAANYL+I  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of CmoCh11G017450 vs. TAIR 10
Match: AT2G25700.1 (SKP1-like 3 )

HSP 1 Score: 201.4 bits (511), Expect = 5.1e-52
Identity = 101/160 (63.12%), Postives = 125/160 (78.12%), Query Frame = 0


Query: 3   SSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYCKK 62
           + K+I+L+SSDGE+F ++EAVA+ESQTIK+MIEDDC D  IP+PNVTG+ILA+VIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVETDAKDSKALD-------DTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQT 122
           HVE  A+     D         LK WD +FVKVD   LFDL+ AANYL+I  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTP ++R+ FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

[Close]

BLAST of CmoCh11G017450 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 199.5 bits (506), Expect = 1.9e-51
Identity = 100/153 (65.36%), Postives = 125/153 (81.70%), Query Frame = 0


Query: 3   SSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYCKK 62
           SSK+IVL SSDG++F ++EAVA++SQTI +M+EDDC    IP+ NV   IL +VIEYCKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMIKG 122
           H   +A  +   ++ L  WD +F+ ++Q+ +F+LILAANYL+IKSLLDLTCQTVADMIKG
Sbjct: 62  HHVDEA--NPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

The following BLAST results are available for this feature:

BLAST of CmoCh11G017450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39255	1.3e-60	73.58	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q9FHW7	5.0e-60	70.76	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q6PL11	1.4e-57	71.08	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q651E8	2.6e-56	69.88	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
Q9LNT9	2.4e-54	68.75	SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1	[more]

BLAST of CmoCh11G017450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EKE0	5.0e-79	100.00	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435156 PE=3 SV=1	[more]
A0A0A0K4P4	7.2e-70	88.39	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G012950 PE=3 SV=1	[more]
A0A5A7U3D8	2.7e-69	87.10	SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00...	[more]
A0A1S3BI15	2.7e-69	87.10	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490282 PE=3 SV=1	[more]
A0A6J1C297	1.0e-68	86.45	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111007712 PE=3 SV=1	[more]

BLAST of CmoCh11G017450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928279.1	1.0e-78	100.00	SKP1-like protein 1A [Cucurbita moschata]	[more]
XP_023529806.1	4.3e-77	98.06	SKP1-like protein 1A [Cucurbita pepo subsp. pepo]	[more]
KAG6589016.1	1.6e-76	97.42	SKP1-like protein 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7015279.1	2.1e-76	96.77	SKP1-like protein 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_004144851.1	1.5e-69	88.39	SKP1-like protein 1B [Cucumis sativus]	[more]

BLAST of CmoCh11G017450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75950.1	9.3e-62	73.58	S phase kinase-associated protein 1	[more]
AT5G42190.1	3.5e-61	70.76	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT1G20140.1	1.7e-55	68.75	SKP1-like 4	[more]
AT2G25700.1	5.1e-52	63.13	SKP1-like 3	[more]
AT4G34210.1	1.9e-51	65.36	SKP1-like 11	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..105 e-value: 1.2E-49 score: 180.9
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..155 e-value: 3.0E-66 score: 220.3
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 1..155
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 5..64 e-value: 6.8E-26 score: 90.2
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 106..153 e-value: 1.9E-30 score: 104.6
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 2..155 e-value: 4.7E-72 score: 243.2
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 6..67
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 1..155
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 6..120 e-value: 1.83327E-56 score: 170.851
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 78..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G017450.1	CmoCh11G017450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0016301	kinase activity