CmoCh11G017370 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G017370
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr11: 12281120 .. 12281440 (+)
RNA-Seq ExpressionCmoCh11G017370
SyntenyCmoCh11G017370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTGTTTCTTTGTCAAGTGCAGAGCATCACGTCAAGTGTCAAGGATTCATGACGATAATGGTAGCAAGAAGTCAAGAAAAACTCAACGAGATGATACTGTTGGTGACACACTGGAAGCAATAGGCAACAAGAGACGACGTCAACGACGAGTAGACAGTAAGGAGCAAAAGACGATGTCATTTACGCTACGACAACGAGGAGAGAGAAATGAGTTGGGTGGGTGGCTTGCAGCATGGTTAGAAGAGGCTGAAAGCCATACGGAAAAAGATGAAATAAAGGCCTTGGAGGAGGCCGCCATGAGCGAGCTAATGGGATGA

mRNA sequence

ATGACTTGTTTCTTTGTCAAGTGCAGAGCATCACGTCAAGTGTCAAGGATTCATGACGATAATGGTAGCAAGAAGTCAAGAAAAACTCAACGAGATGATACTGTTGGTGACACACTGGAAGCAATAGGCAACAAGAGACGACGTCAACGACGAGTAGACAGTAAGGAGCAAAAGACGATGTCATTTACGCTACGACAACGAGGAGAGAGAAATGAGTTGGGTGGGTGGCTTGCAGCATGGTTAGAAGAGGCTGAAAGCCATACGGAAAAAGATGAAATAAAGGCCTTGGAGGAGGCCGCCATGAGCGAGCTAATGGGATGA

Coding sequence (CDS)

ATGACTTGTTTCTTTGTCAAGTGCAGAGCATCACGTCAAGTGTCAAGGATTCATGACGATAATGGTAGCAAGAAGTCAAGAAAAACTCAACGAGATGATACTGTTGGTGACACACTGGAAGCAATAGGCAACAAGAGACGACGTCAACGACGAGTAGACAGTAAGGAGCAAAAGACGATGTCATTTACGCTACGACAACGAGGAGAGAGAAATGAGTTGGGTGGGTGGCTTGCAGCATGGTTAGAAGAGGCTGAAAGCCATACGGAAAAAGATGAAATAAAGGCCTTGGAGGAGGCCGCCATGAGCGAGCTAATGGGATGA

Protein sequence

MTCFFVKCRASRQVSRIHDDNGSKKSRKTQRDDTVGDTLEAIGNKRRRQRRVDSKEQKTMSFTLRQRGERNELGGWLAAWLEEAESHTEKDEIKALEEAAMSELMG
Homology
BLAST of CmoCh11G017370 vs. ExPASy TrEMBL
Match: A0A0A0K1A5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.2e-13
Identity = 51/103 (49.51%), Postives = 64/103 (62.14%), Query Frame = 0

Query: 1   MTCFFVKCRASRQVSRIHDDNGSKKSRKTQRDD--TVGDTLEAIGNKRRRQRRVDSKEQK 60
           M CF  KC    QV RI +D  ++K RK +RDD   +G+  + +   R+  RRV SKE+K
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  TM---SFTLRQRGERNELGGWLAAWLEEAESHTEKDEIKALEE 99
            M   S   R + ER ELGGWLAAWLEEAE   EKDE+K LE+
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEK 103

BLAST of CmoCh11G017370 vs. NCBI nr
Match: KAG6589008.1 (hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.0 bits (445), Expect = 1.7e-40
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0

Query: 10  ASRQVSRIHDDNGSKKSRKTQRDDTVGDTLEAIGNKRRRQRRVDSKEQKTMSFTLRQRGE 69
           AS QVSRI+DD GSKKSRKTQRDDTVGDTLEAIGNKRRRQRRVD+KEQKTMSFTLRQRGE
Sbjct: 127 ASCQVSRIYDDEGSKKSRKTQRDDTVGDTLEAIGNKRRRQRRVDNKEQKTMSFTLRQRGE 186

Query: 70  RNELGGWLAAWLEEAESHTEKDEIKALEEAAMSELMG 107
           RNELGGWLAAWLEEAESHTEKDEIKALEEAAMSELMG
Sbjct: 187 RNELGGWLAAWLEEAESHTEKDEIKALEEAAMSELMG 223

BLAST of CmoCh11G017370 vs. NCBI nr
Match: KAG6589009.1 (hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.4 bits (285), Expect = 6.1e-22
Identity = 62/100 (62.00%), Postives = 76/100 (76.00%), Query Frame = 0

Query: 1   MTCFFVKCRASRQVSRIHDDNGSKKSRKTQRDDTVGDTLEAIGNKRRRQRRVDSKEQKTM 60
           M CFF+KC  SRQV RI +D+GSKK  +TQ+DDTV +    I N+R+ Q+RVDSKE+KT 
Sbjct: 1   MACFFLKCGGSRQVPRIQNDDGSKKPMETQQDDTVDEAPVEISNQRQHQQRVDSKERKTT 60

Query: 61  SFTLRQRGERNELGGWLAAWLEEAESHTEKDEIKALEEAA 101
           S    +RG ++E  GWLAAWLEEAE H EKDEIKAL+EAA
Sbjct: 61  SL---KRGGKSESSGWLAAWLEEAEGHGEKDEIKALKEAA 97

BLAST of CmoCh11G017370 vs. NCBI nr
Match: KGN43248.1 (hypothetical protein Csa_020351 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 8.8e-13
Identity = 51/103 (49.51%), Postives = 64/103 (62.14%), Query Frame = 0

Query: 1   MTCFFVKCRASRQVSRIHDDNGSKKSRKTQRDD--TVGDTLEAIGNKRRRQRRVDSKEQK 60
           M CF  KC    QV RI +D  ++K RK +RDD   +G+  + +   R+  RRV SKE+K
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  TM---SFTLRQRGERNELGGWLAAWLEEAESHTEKDEIKALEE 99
            M   S   R + ER ELGGWLAAWLEEAE   EKDE+K LE+
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEK 103

BLAST of CmoCh11G017370 vs. NCBI nr
Match: KAG6572110.1 (hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 6.1e-06
Identity = 49/101 (48.51%), Postives = 55/101 (54.46%), Query Frame = 0

Query: 1  MTCFFVKCRASRQVSRIHDDNGSKKSRKTQRDDTVGDTLEAI--GNK-RRRQRRVDSKEQ 60
          M CF V C  SRQ  RI  DN  +K +K  RD  V D       G K +RR+RRV   E+
Sbjct: 1  MDCFLV-CGVSRQAMRIQADNNKRKVKKVVRDGIVVDETPTTTKGKKWQRRRRRVGDNER 60

Query: 61 KTMSFTLRQRGERNELGGWLAAWLEEAE-SHTEKDEIKALE 98
          +T S   R  G R E GGWLAAWLEEAE    EK   K LE
Sbjct: 61 ET-SRLQRTDGGRVESGGWLAAWLEEAEMKELEKAHAKGLE 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K1A54.2e-1349.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6589008.11.7e-4095.88hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589009.16.1e-2262.00hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN43248.18.8e-1349.51hypothetical protein Csa_020351 [Cucumis sativus][more]
KAG6572110.16.1e-0648.51hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G017370.1CmoCh11G017370.1mRNA