CmoCh11G016790 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G016790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr11: 11911172 .. 11911908 (-)
RNA-Seq Expression	CmoCh11G016790
Synteny	CmoCh11G016790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCGAGTGAATCAAAACATTCACCTTAGAATATCCTTTTTTTCCAAGCCCAACAATACGAACAGTATGAAATAATAAAAATATTAATAGCTCGTTATCGTTAAAATATATGCACGATTGAAGTTCATCAAACTAATAATACAATCTCGTGCAGGGTCGAAAATTCTAATTTTGTATCTATAAATCTCGACATATTCAGCATTTTTAAATTTAATAGTCTTATAAATACAAAATTAAAAAAAAATATATTTTATATATCTATATATATGAAAAATCTATTAAACATATATATATATATATATATATATATATATATTAATAATTGAAGTTAACTTATAATTTAATTAAAAAAATGGACAATTATAGTGAGAGGAATATCTTGAAACTCATACAGTCAGTGAGACGGCGTCGTTTTGCTTTGAAAGTGATTCCGTCCTGCTACTCAATTATTCATTGGTCACAGAAGGAAGTCGGACGTGACGCCACCATCCACCCCAATGACGCCACGTGTCAATTTGTCTTTAACCACGGACGTCAAAACTGACCGTTAACTCCATTTGACCAAACTAGCAGCGTCCGCTCTGTCAGTTGCGAAGGAAAGAAAGAAAAGGAACAAGGAAGAAGAGAAGAGAAGAGAAGAGAAGGATAGAGACGGAATCTCGAGTGGTCAAAGAAAAACTGCAAATACTGCAGAATCTTCTTTCAGCTCTCTTTGCCAGGGGGAAGATTCGTAG

mRNA sequence

ATGACTCGAGTGAATCAAAACATTCACCTTAGAATATCCTTTTTTTCCAAGCCCAACAATACGAACACGTCCGCTCTGTCAGTTGCGAAGGAAAGAAAGAAAAGGAACAAGGAAGAAGAGAAGAGAAGAGAAGAGAAGGATAGAGACGGAATCTCGAGTGGTCAAAGAAAAACTGCAAATACTGCAGAATCTTCTTTCAGCTCTCTTTGCCAGGGGGAAGATTCGTAG

Coding sequence (CDS)

ATGACTCGAGTGAATCAAAACATTCACCTTAGAATATCCTTTTTTTCCAAGCCCAACAATACGAACACGTCCGCTCTGTCAGTTGCGAAGGAAAGAAAGAAAAGGAACAAGGAAGAAGAGAAGAGAAGAGAAGAGAAGGATAGAGACGGAATCTCGAGTGGTCAAAGAAAAACTGCAAATACTGCAGAATCTTCTTTCAGCTCTCTTTGCCAGGGGGAAGATTCGTAG

Protein sequence

MTRVNQNIHLRISFFSKPNNTNTSALSVAKERKKRNKEEEKRREEKDRDGISSGQRKTANTAESSFSSLCQGEDS

Homology

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BLAST of CmoCh11G016790 vs. NCBI nr
Match: KAG7022723.1 (hypothetical protein SDJN02_16457, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.6 bits (174), Expect = 3.2e-09
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 18  PNNTNTSALSV-AKERKKRNKEEEKRREEKDRDGISSGQRKTANTAESSFSSLCQGEDS 76
           PN+    ++S   K+ K++ + EEKRREEKDRDGISSGQRKTANTAESSFSSLCQGEDS
Sbjct: 48  PNDATVRSVSCEGKKEKEQGRREEKRREEKDRDGISSGQRKTANTAESSFSSLCQGEDS 106

The following BLAST results are available for this feature:

BLAST of CmoCh11G016790 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G016790 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G016790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022723.1	3.2e-09	71.19	hypothetical protein SDJN02_16457, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmoCh11G016790 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 27..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G016790.1	CmoCh11G016790.1	mRNA