CmoCh11G016110 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G016110
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr11: 11526598 .. 11529284 (+)
RNA-Seq ExpressionCmoCh11G016110
SyntenyCmoCh11G016110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATAAGGTAATATTTCACCAAAGAATATAATCCATTTGAAAAAAAAAATCATTTATTTACTAAATTGGCACGTTGGCTCGGTGTAATAGCTCAAACTCACAGCTTATATTGTCCGTTTTGGCCCGTTACGTATCGGGTCTGATTTTAAAATACGTCTACTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTTGTTCCCCCTTCAACCGATGTGAGATCTCACAATCCACCTCTTTGGGGCCTAGCGTCCTCGTTGACGCGTCCTCGTTGGCACATCGCTCGGTGTCTAGCTCTAATAACATTTGTAACAACACAAACCTACTGCTAACAAATATTGTCCACTTTGACTCGTTACGTATCGTCGTTAGTCTCACGATTTTAAAATGCATCTACTAGGGAAAGGTTTCCACACCCTTATAAGGAATGTTTTGTTCCCCCTTCAAACCGAGGTGAGACCTCACAATCCACCTCTTTAGGGTCTAGCTCTAATAACATTTGTAACAGCACAAGCCTACTGCTAACAAATATTGTCCACTTTGGCTCGTTACGTATCGTCGTCAGTCTCACGATTTTAAAACGCATCTACTAGGGAAAGGTTTCCACACTCTTAAGGAATGTTTTGTTCCCCCTCTAACCGATGTGAGACCTCACAATCCACCTCTTTAGGGTCTAGCGTCCTCGTTGGCACATCGCTCGGTGTCTAGCTCTAATAACATTTGTAATAGCCAAGCCTACTGCTAACAAATATTGTCCGCTTTGGCTCGTTACGTATTGTAGTCAGTCTCACAATTTTAAAACGCATCTACTCTTATAAGAAATATTTTGTTTCCTTCTCCAACGGTATTGGAATTGTAAATTTTTTCCTCATAATGTTTCGAGTTCGTTGAATCACAACGTTTGGTTTGAATAACTACTACTTTTTTTGGTTTCAGTCGTTAAACTATAGTTTTTGTCTACTTATCGTTGAACAGGCTTCTGAATTTTTAATTTTATGTCTAATAAATCGCTAATTTATTCAAAACGGTAAAAGTTAATCGATTAATCTCGGCTATAAAACTGCAAAATAAGTCAGGTTTTCAATCACGAGCTCACAAGCTCAATAAGATTTTTTGTGATATCTCTTTTTTAAAGTTACTTTTTCTTTAAAGTATATTCTCACAAATAGTCTATTCTCAGTTCAAATTTATATTTAAAATATTATAACGGGTTTGAGTATCATATGACATCATTAGAGTATTAGTCAGCGGTGCTCATCGAAGTTTTCATCAAAGTTAGTCGTCAACGATGTGCATAGGACACGGCTTCAAAGGTTGTCGCTAGAGGTAGTTATCAGAGTTGATCATGCAATGGTGGTTGCTAGAGTTATCGTTGGAATAGTTTCTAGACTCGAGTCATTGGTGGTGCTATGGTGATCGCTAGCGAGCCCGTTAGTGTGAGAATATTTCGGTCAGTTTCATAAATCAAACAAGACTTGTTCAAATGACTCGATAACTAGATCACCTCGGATTACCTAACCCAAACCATTAAGATTGGGTCGATTTTTTTTTTCTTTCTAAAATTTGGGTTGGTAGGCAGGTTGACATTTTTTTTATCCCGTCAATCCAACGAACCCAAAAATATGGTTACAACCTAACCCTACTCTACTTTTAAGATTATTATCTTGATTAAGAATATTTGACTTTTGTAATCGATAGCAGTGACACATTGTGAATGATTGATATTTAAAATTAATAATAATAAATAAAAAAAAACAACGTGACAACCCAACCTAACCCAAAAATAAATGATTTGAGTTCGGATGTAAACTCTATTCAGATCACTCAGGCCACTAACTCAATCGATCCGCAGATTGGTTTAAAAGATTTCTCCAACCCAACTCATATATACACTCGTAAACCAAACCGACCCAAATTTATAGGGCAACAACCTGACACAAGAAATATATATATATGTGATGTCCCACATTGGTTGGGGAGAAGAACAAACCACCATTTATAAGGGTGTAGAAACCTTCCCCTAGCAGACGCGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCCCCTAGTGGTGGATCTAGGGTCGTTACAAATGGTATCAGAGTCAGACATGCCAGCTTTCTTGTTCCCCGAAAGGGTGGATTGTGATGTCCCACATTGGTTGGGTTAGCGGTGGATCTAAGCCGTTACAAATTGTAACGGCCTAGATCTACCGTGCTTTTCAAGTGAAAGAATAAAAAATAATAATAAAAAAAAAATTATCCAATCAATTATTCCTTCATTCCATAAAGCGTACGTAAATTTGTATATAAATATCCCCACCATTTTGCTTATCAGAAATTCAAAGCGGAGAGGTTTCACGATGCCTTTCTACAAGCAATACAAAGGGACCAAAACAAAGCCAACTGGTTTGGTTGGCTATGTCTTCCACCGGGACTATGCTATTTCTCCACACAACGTTGCTTTGTTGGTGCACGAGAACCCCGGCCCCGACACAGCGGTGACTCGGGACTCCTTGACTCAGTTCGATAACCTATATGGAATTGTCGCTGATGAAGGTATCGATGTAAAGGCTGCAAACTATATTTCCTCCACTCTAGCACGGTTCAAAAGTTTGAATGAGTTAACTCCGACAGAAATACTGTCTCCTCCGTTGGCTCGTCGTGAGATTTAA

mRNA sequence

ATGAACATAAGAAATTCAAAGCGGAGAGGTTTCACGATGCCTTTCTACAAGCAATACAAAGGGACCAAAACAAAGCCAACTGGTTTGGTTGGCTATGTCTTCCACCGGGACTATGCTATTTCTCCACACAACGTTGCTTTGTTGGTGCACGAGAACCCCGGCCCCGACACAGCGGTGACTCGGGACTCCTTGACTCAGTTCGATAACCTATATGGAATTGTCGCTGATGAAGGTATCGATGTAAAGGCTGCAAACTATATTTCCTCCACTCTAGCACGGTTCAAAAGTTTGAATGAGTTAACTCCGACAGAAATACTGTCTCCTCCGTTGGCTCGTCGTGAGATTTAA

Coding sequence (CDS)

ATGAACATAAGAAATTCAAAGCGGAGAGGTTTCACGATGCCTTTCTACAAGCAATACAAAGGGACCAAAACAAAGCCAACTGGTTTGGTTGGCTATGTCTTCCACCGGGACTATGCTATTTCTCCACACAACGTTGCTTTGTTGGTGCACGAGAACCCCGGCCCCGACACAGCGGTGACTCGGGACTCCTTGACTCAGTTCGATAACCTATATGGAATTGTCGCTGATGAAGGTATCGATGTAAAGGCTGCAAACTATATTTCCTCCACTCTAGCACGGTTCAAAAGTTTGAATGAGTTAACTCCGACAGAAATACTGTCTCCTCCGTTGGCTCGTCGTGAGATTTAA

Protein sequence

MNIRNSKRRGFTMPFYKQYKGTKTKPTGLVGYVFHRDYAISPHNVALLVHENPGPDTAVTRDSLTQFDNLYGIVADEGIDVKAANYISSTLARFKSLNELTPTEILSPPLARREI
Homology
[Close]
BLAST of CmoCh11G016110 vs. ExPASy TrEMBL
Match: A0A0A0LVE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097750 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.9e-32
Identity = 74/105 (70.48%), Postives = 85/105 (80.95%), Query Frame = 0 

Query: 9   RGFTMPFYKQYKGTKTKPTGLVGYVFHRD--YAISPHNVALLVHENPGPDTAVTRDSLTQ 68
           RG  MPFYKQY G+KTK TGLVGYVFHR+   ++S HN+ LLV ++PG DT  TRDSL+Q
Sbjct: 13  RGKLMPFYKQYNGSKTKQTGLVGYVFHRECYSSVSQHNIGLLVQDDPGRDTTATRDSLSQ 72

Query: 69  FDNLYGIVADEGIDVKAANYISSTLARFKSLNELT-PTEILSPPL 111
           FD  YGI+ADEG+DVKAANYISSTLARFKSLNEL  P E+ S PL
Sbjct: 73  FDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIPL 117

[Close]
BLAST of CmoCh11G016110 vs. ExPASy TrEMBL
Match: A0A5D3C0J6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001540 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.2e-30
Identity = 78/123 (63.41%), Postives = 88/123 (71.54%), Query Frame = 0 

Query: 1   MNIRNSKRRGF----TMPFYKQYKGTKTKPTGLVGYVFHRD---YAISPHNVALLVHENP 60
           M     K RGF     MPFYKQY G+KTK TGLVGYVFHR+      S HN+ALLV +NP
Sbjct: 1   MEANKRKLRGFMKGKLMPFYKQYNGSKTKQTGLVGYVFHRECYSSVSSQHNIALLVQDNP 60

Query: 61  GPDTAVTRDSLTQFDNLYGIVADEGIDVKAANYISSTLARFKSLNELT-PTEILSPPLAR 116
             DT  TR SL+Q D+ YGIVADEG+DVKAANYISSTLARFKSLNEL  P E+ S PL  
Sbjct: 61  SRDTTATRGSLSQSDHSYGIVADEGVDVKAANYISSTLARFKSLNELPHPIEMSSIPLPH 120

[Close]
BLAST of CmoCh11G016110 vs. ExPASy TrEMBL
Match: A0A6A6LUB7 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_001496 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 49/114 (42.98%), Postives = 64/114 (56.14%), Query Frame = 0 

Query: 5   NSKRRGF----TMPFYK---------QYKGTKT-KP------TGLVGYVFHRDYAISP-- 64
           N KRRGF     MPFY+         QY  +K  KP      T  VG+  H+DY I+P  
Sbjct: 38  NRKRRGFMKGKLMPFYRSPKPSSSNLQYTSSKVIKPSQSSPSTPSVGFFVHQDYIIAPPK 97

Query: 65  -HNVALLVHENPGPDTAVTRDSLTQFDNLYGIVADEGIDVKAANYISSTLARFK 96
            + V+ ++   P PD+   RD LTQFD +YG+  DE +D+KAA+YISS   RFK
Sbjct: 98  QNKVSFII--PPAPDS--NRDKLTQFDKVYGVPGDESVDIKAASYISSVQERFK 147

[Close]
BLAST of CmoCh11G016110 vs. ExPASy TrEMBL
Match: A0A067LN74 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10105 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 48/111 (43.24%), Postives = 60/111 (54.05%), Query Frame = 0 

Query: 5   NSKRRGF----TMPFYKQYKGT-------KTKPT------GLVGYVFHRDYAISP--HNV 64
           N KRRGF     +PFY+  K T       K KP+        VG+V H+DY I+P    V
Sbjct: 4   NRKRRGFMKGKLIPFYRSSKATSTVQYSSKVKPSQSSPSAASVGFVVHQDYIITPPKQKV 63

Query: 65  ALLVHENPGPDTAVTRDS-LTQFDNLYGIVADEGIDVKAANYISSTLARFK 96
           + +V     P     RD  L+QFD LYG+  DEG+D+KAA YISS   RFK
Sbjct: 64  SFIV-----PTADSNRDKYLSQFDKLYGVAGDEGVDIKAATYISSVQERFK 109

[Close]
BLAST of CmoCh11G016110 vs. ExPASy TrEMBL
Match: A0A2C9U7Q7 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G102100 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.8e-08
Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 0 

Query: 5   NSKRRGF----TMPFYK---------QYKGTKTKPTGL------VGYVFHRDYAISP--- 64
           N KRRGF     MPFY+         QY     KP+        VG+  H+DY I+P   
Sbjct: 4   NRKRRGFMKGKLMPFYRSPKSSSSNLQYTSKVIKPSQASPSAPSVGFYVHQDYIIAPPKQ 63

Query: 65  HNVALLVHENPGPDTAVTRDSLTQFDNLYGIVADEGIDVKAANYISSTLARFK 96
           + V+ ++   P PD    R+ L QFD +YG+  DE +D+KAA+YISS   RFK
Sbjct: 64  NKVSFII--APPPDG--NRERLAQFDKVYGLPGDESVDIKAASYISSVQERFK 112

[Close]
BLAST of CmoCh11G016110 vs. NCBI nr
Match: KAG6588895.1 (hypothetical protein SDJN03_17460, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.8 bits (530), Expect = 2.6e-50
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 13  MPFYKQYKGTKTKPTGLVGYVFHRDYAISPHNVALLVHENPGPDTAVTRDSLTQFDNLYG 72
           MPFYKQYKGTKTKPTGLVGYVFHRDYAISPHNVALLVHENPGPDTAVTRDSLTQFDNLYG
Sbjct: 1   MPFYKQYKGTKTKPTGLVGYVFHRDYAISPHNVALLVHENPGPDTAVTRDSLTQFDNLYG 60

Query: 73  IVADEGIDVKAANYISSTLARFKSLNELTPTEILSPPLARREI 116
           IVADEGIDVKAANYISSTLARFKSLNELTP EILSPPLARREI
Sbjct: 61  IVADEGIDVKAANYISSTLARFKSLNELTPIEILSPPLARREI 103

[Close]
BLAST of CmoCh11G016110 vs. NCBI nr
Match: KAG7022660.1 (hypothetical protein SDJN02_16394, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 5.9e-31
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 13 MPFYKQYKGTKTKPTGLVGYVFHRDYAISPHNVALLVHENPGPDTAVTRDSLTQFDNLYG 72
          MPFYKQYKGTKTKPTGLVGYVFHRDYAISPHNVALLVHENPGPDTAVTRDSLTQFD+LYG
Sbjct: 1  MPFYKQYKGTKTKPTGLVGYVFHRDYAISPHNVALLVHENPGPDTAVTRDSLTQFDSLYG 60

Query: 73 IVADEGID 81
          IVADEGID
Sbjct: 61 IVADEGID 68

[Close]
BLAST of CmoCh11G016110 vs. NCBI nr
Match: KAA0042928.1 (hypothetical protein E6C27_scaffold44G004520 [Cucumis melo var. makuwa] >TYK05327.1 hypothetical protein E5676_scaffold108G001540 [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 6.6e-30
Identity = 78/123 (63.41%), Postives = 88/123 (71.54%), Query Frame = 0 

Query: 1   MNIRNSKRRGF----TMPFYKQYKGTKTKPTGLVGYVFHRD---YAISPHNVALLVHENP 60
           M     K RGF     MPFYKQY G+KTK TGLVGYVFHR+      S HN+ALLV +NP
Sbjct: 1   MEANKRKLRGFMKGKLMPFYKQYNGSKTKQTGLVGYVFHRECYSSVSSQHNIALLVQDNP 60

Query: 61  GPDTAVTRDSLTQFDNLYGIVADEGIDVKAANYISSTLARFKSLNELT-PTEILSPPLAR 116
             DT  TR SL+Q D+ YGIVADEG+DVKAANYISSTLARFKSLNEL  P E+ S PL  
Sbjct: 61  SRDTTATRGSLSQSDHSYGIVADEGVDVKAANYISSTLARFKSLNELPHPIEMSSIPLPH 120

[Close]
BLAST of CmoCh11G016110 vs. NCBI nr
Match: KAE8650773.1 (hypothetical protein Csa_017653 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-20
Identity = 61/103 (59.22%), Postives = 68/103 (66.02%), Query Frame = 0 

Query: 9   RGFTMPFYKQYKGTKTKPTGLVGYVFHRDYAISPHNVALLVHENPGPDTAVTRDSLTQFD 68
           RG  MPFYKQY G+KTK TGL                     ++PG DT  TRDSL+QFD
Sbjct: 13  RGKLMPFYKQYNGSKTKQTGL---------------------DDPGRDTTATRDSLSQFD 72

Query: 69  NLYGIVADEGIDVKAANYISSTLARFKSLNELT-PTEILSPPL 111
             YGI+ADEG+DVKAANYISSTLARFKSLNEL  P E+ S PL
Sbjct: 73  RSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIPL 94

[Close]
BLAST of CmoCh11G016110 vs. NCBI nr
Match: XP_021648774.1 (uncharacterized protein LOC110641383 [Hevea brasiliensis])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 49/114 (42.98%), Postives = 64/114 (56.14%), Query Frame = 0 

Query: 5   NSKRRGF----TMPFYK---------QYKGTKT-KP------TGLVGYVFHRDYAISP-- 64
           N KRRGF     MPFY+         QY  +K  KP      T  VG+  H+DY I+P  
Sbjct: 4   NRKRRGFMKGKLMPFYRSPKPSSSNLQYTSSKVIKPSQSSPSTPSVGFFVHQDYIIAPPK 63

Query: 65  -HNVALLVHENPGPDTAVTRDSLTQFDNLYGIVADEGIDVKAANYISSTLARFK 96
            + V+ ++   P PD+   RD LTQFD +YG+  DE +D+KAA+YISS   RFK
Sbjct: 64  QNKVSFII--PPAPDS--NRDKLTQFDKVYGVPGDESVDIKAASYISSVQERFK 113

The following BLAST results are available for this feature:
BLAST of CmoCh11G016110 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G016110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVE79.9e-3270.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097750 PE=4 SV=1[more]
A0A5D3C0J63.2e-3063.41Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6A6LUB76.2e-1042.98Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_001496 PE=4 SV=1[more]
A0A067LN741.4e-0943.24Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10105 PE=4 SV=1[more]
A0A2C9U7Q75.8e-0839.82Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G102100 PE=4 SV=... [more]
BLAST of CmoCh11G016110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6588895.12.6e-5099.03hypothetical protein SDJN03_17460, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7022660.15.9e-3198.53hypothetical protein SDJN02_16394, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0042928.16.6e-3063.41hypothetical protein E6C27_scaffold44G004520 [Cucumis melo var. makuwa] >TYK0532... [more]
KAE8650773.12.1e-2059.22hypothetical protein Csa_017653 [Cucumis sativus][more]
XP_021648774.11.3e-0942.98uncharacterized protein LOC110641383 [Hevea brasiliensis][more]
BLAST of CmoCh11G016110 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G016110.1CmoCh11G016110.1mRNA