CmoCh11G015860 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G015860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr11: 11386479 .. 11387221 (-)
RNA-Seq ExpressionCmoCh11G015860
SyntenyCmoCh11G015860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATGGATTAACAATTAAGAACCAGTTGCTTGCTGTGGATGGTGACCTAAATGTAATGCAATTGCGTTGAATGTGTTGTGGGTATCGTACAAGCAACTTTTCTTCCTGTTTGAACGTTTTAGAACTTCGATTCTGCATTTTGGATTGGTGTTTGTTTACAAGATGAACAATCTCTTCCAGATCTTTGCTCAAGAAATGCGTTATTCTAGTCTTATAGAGGGGTTGTGAATGTAAAGAATCTGTACTTTATGTATTGTTAATTTCGATACCGTTCTTCGTTCTTCCATTGTGTTCATCTCTAGCGGATTCTGCATTTTCCCTCACATTCATCCATTTGGGATACATACAACTCCAGTAGATCATATCATGAAGAGTAATGGAAAAAGTTGTGCTGCTTTATATAATTTTAATGGAATTGGATCCATACCAGGCATTTAGAAATGCAAGGACTAATCGTTTTTCATATCGTTTTCAGGTGTGTTCATTCGTTCGATTGGCAATGAGGAATTGTGTGTCTTTGGATGTTCATTTGAATGGAGGTCAGAAGAAATTTGCTCATTGTGATCTTTGGATATCCCTCATCTGCTTGATTTTCTTCATGAAAAACTCCATGGGCATGGAAGAGGGTATGGCTAAATCATGGATGCATTTGGAAGATACATAGCATTGGCTTACCTTTAGATTTGGAATTGCTATCTTTTTATTGTTCTTCTTTTGTCAGGGTACAAACAAGCATAG

mRNA sequence

ATGACATATGGATTAACAATTAAGAACCAGTTGCTTGCTGTGGATGGTGACCTAAATGTGTGTTCATTCGTTCGATTGGCAATGAGGAATTGTGTGTCTTTGGATGTTCATTTGAATGGAGGTCAGAAGAAATTTGCTCATTGTGATCTTTGGATATCCCTCATCTGCTTGATTTTCTTCATGAAAAACTCCATGGGCATGGAAGAGGGGTACAAACAAGCATAG

Coding sequence (CDS)

ATGACATATGGATTAACAATTAAGAACCAGTTGCTTGCTGTGGATGGTGACCTAAATGTGTGTTCATTCGTTCGATTGGCAATGAGGAATTGTGTGTCTTTGGATGTTCATTTGAATGGAGGTCAGAAGAAATTTGCTCATTGTGATCTTTGGATATCCCTCATCTGCTTGATTTTCTTCATGAAAAACTCCATGGGCATGGAAGAGGGGTACAAACAAGCATAG

Protein sequence

MTYGLTIKNQLLAVDGDLNVCSFVRLAMRNCVSLDVHLNGGQKKFAHCDLWISLICLIFFMKNSMGMEEGYKQA
Homology
[Close]
BLAST of CmoCh11G015860 vs. NCBI nr
Match: KAG7022636.1 (hypothetical protein SDJN02_16370, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.1 bits (401), Expect = 1.5e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MTYGLTIKNQLLAVDGDLNVCSFVRLAMRNCVSLDVHLNGGQKKFAHCDLWISLICLIFF 60
          MTYGLTIKNQLLAVDGDLNVCSFVRLAMRNCVSLDVHLNGGQKKFAHCDLWISLICLIFF
Sbjct: 1  MTYGLTIKNQLLAVDGDLNVCSFVRLAMRNCVSLDVHLNGGQKKFAHCDLWISLICLIFF 60

Query: 61 MKNSMGMEEGYKQA 75
          MKNSMGMEEGYKQA
Sbjct: 61 MKNSMGMEEGYKQA 74

[Close]
BLAST of CmoCh11G015860 vs. NCBI nr
Match: KAG7017854.1 (hypothetical protein SDJN02_19720, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.2 bits (191), Expect = 3.4e-11
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 15 DGDLNVCSFVRLAMRNCVSLDVHLNGGQKKFAHCDLWISLICLIFFMKNSMGMEEG 71
          DG +  C  V LAM NC+SLDV LNGG+K FAH +LWIS ICLI F  NSM M+EG
Sbjct: 18 DGAMMGCLLVPLAMTNCMSLDVDLNGGRKNFAHYELWISHICLILFTTNSMSMDEG 73

The following BLAST results are available for this feature:
BLAST of CmoCh11G015860 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G015860 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G015860 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022636.11.5e-35100.00hypothetical protein SDJN02_16370, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7017854.13.4e-1164.29hypothetical protein SDJN02_19720, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh11G015860 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G015860.1CmoCh11G015860.1mRNA