CmoCh11G015280 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G015280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	F-box protein At1g10780-like
Location	Cmo_Chr11: 10920320 .. 10923474 (+)
RNA-Seq Expression	CmoCh11G015280
Synteny	CmoCh11G015280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACACCCTCCCAAATCCAAACCCCCTCCCACCCCTCTCCTCTTCCAAACGTCTCTATAAGTGCGCTCCTTCTTCGTTCCCTCTCTCTCTCTCTACCTCTTTCTCTCTCTAGGTTGCCGCTTTTGCTTCTTCTTCCTCCAACCCCAACTCTCAGATCCTCTTCCCCACAATACCCACTTCCCACATTTCGCTAATTGTAAGCCCCAAATCTTGATTTCGCTATTTTCCTTTCATGGGTTTTGCTCGGATTCTTTGTTCTTGTTCTTGAATCTTTGATGCTGTTTTGCCTTTGTTTGGATTTTGTTCCTCCTCTTTGTTTGATGTTTGATTCACTTTAGCTACTGAACTATGCAATTTCTACTGATTTCTGAGGCTGCTTTGCCTTTGTTCTTGTTAATCAAGAACTTTTAACGCATTGTTTGATTCTAATTCATCGGGGAAATCTGTTTTCCTTTCACCCTTTAGATCTGTTGTTTCGTTTTGGAGGAATTTTGAAAGAGATTTTCATGTAGAACAGTTTGTAACTTATGATTTTCTATGATTTGTGTGCGAATTCAGTGGATTTTGTTGAATCAATCAGCTTGTGAGTTCTTCTATGTTCAATAATCTTGTGTTGAATGATTTGATTAACGTTTCTCCCCTGCTAATTTTTCGTTAGTGGAATGTTTGATTTCTGACCACAATCTGTTTGATAAATTTCCTCACAGAATGGACTCACTCCCAGATGCTATTATTCAGTACATCTTGTCACATATGACCAATGCTCGCGACCTAGCTGTCTGCAATTGTGTATCCAAGCGTTGGAAAGACTCGACGCCCTACATTAAAAGTCTCTATTTCCCTCGCAATTCCTTCGACAGTCATTCGGGCGAGTCGAGTCCTGACGTCATTGTTTGCAGGATAGTTTCATCCATTGTTCGCTTGGAGGAGCTTGTTGTTTATAGTCCATTTACAAGTGCTGGTCTTGCTTCATGGCTGTCTAGTATCGGCCCCTCGCTTCGGCGACTCGAGCTACGAATGGATAATTTGGTTGATCTACAAGCTTGTCAAGAGAGCCCTTCCAAGTTGGAATACCTTAAATCTGCTGAAAAATTGGAGTCACTTAAATTATGGGGTGTCTTAATGACACATTCACCTAGGTGGGATGTGTTCCAAAAGCTAAAAAACCTTGAGATTGTTGGTGCCAAGTTAGAGGATCCTGCATTGAACTCTGCTCTTCGTGCATGTCCTAATCTATCCAATTTATTGCTCCTTGGCTGTGAAGGTTTAACTTCAGTTTCAATTGAGCTGAAGCACTTAGAACAGTGTAAGCTGGACTTCTATGGCTTGGGGAACTGCTCACTTATGATCAATTCCCCTAAACTTCAACTCCTTGAAGTTCAAGGATTTAGTTGGATTAGAGCCCGTGGGACAAGTTCCTTGACAAGTCTTTCAATTGCAAATAATGCAGGTAATCATCATAACTACAAAGTCTTCCACAAGTTATTATGAACAACTAGAACTACACTTAAAAAAGTTAATCCAAACTCATTTGAAAACCTTTGTGATCATGATTATGTTCTTTATCTTTATGGTTTGTGAGCACGACATGATTCACGGGATGTATTCGTTTCTTGTATGCAACCCTTTAAAGGGAAGAGTCTCTACTAGGTGGAAGTTGTAGAGGATTGTTGGGAGGGAGTCTCACGTTGGCTAATTTAGGGAATGATCATGGGTTTATAAGTAAGGAATACATCTCCATTGGTATGAGGTCTTTTGGGGAAACCAAAAGCAAAACCATGAGAGCTTATGCTCAAAGTGGGCAATATCATATCATTGTGGAGTGTCGTTATTCCTAACATGGTATCAGAGTCATACCCTTAACTTAGCTATGTCAATAGAATCCTCAAATGTCAAACAAAGAAGTTGCGAGCCTCGAAAGTGTAGTCAAAAGTGACTCAAGTGTCGAACAAAGGGTATGGCTTTGTACCATTTGTTCGAGGGCTCTAGAGAAAGGAGTCGAGCCTCAATTAAGGGGAAGCTGTTCGAGGGCTTCATAGGCCTTAGGGGAGGCTCTATGGTGTATTTTGTTCGAGGGGAGGATTGTTGGGAGGGAGTCCCACATGGGTTTATAAGGAATACATCTCCATTGGTATGAGGCCTTTTGGGGAAACCAAAAGTAAAGCCACGAAAGCTTATGTTCAAAGTGGACAATATCATACCATTGTGGAGGGTCGGGATTCCTAACCGAAGTTTGCAAGATTTTGATACTCATTTCAAGACCTTGAATAGTCATTTGATACTCATTTCAAGACCTTGAATAGTCATTTGATACTCATTTTCTTCTTTCTTTATGTTTACAGGAAGAGTTTACATGGTGGATTTTGATAAGCTTGGTTCATTGGAGTCTCTATCCATAAGAGGAGTTCAATGGTGTTGGGATGCAATAAGCAAAATGCTTGAATGGGGGAGTGAGGTTAAACATCTTTACATGAAGGTTGAGTTCACTGGAGACTTTGATGCACTTGAGCCCTTCCCTGAGATTGACTTTGTTGAGTTTTTCAATCACCATCCAAAGTTGCAAAGGTTTGACATTCATGGAGCCATGTTTGCTGCACTTTGCCCCAAGAACAGCATTAAAAATGTAAGTAGGATTAGTGCCAAGCAAGACAGATTTTTCTTGAGATGGGTTTCTTGGCTTATAACTTACGTTTTTTTGGTACTTAGGTCGATCCGGACTTTGTAATCTCGTGTTTGGAGGAAGTATCGATTTTGGTTCGGTCGCCGTTGAATGCCGAACAGAAGATGAATACTCTCGAGTCGTTGATAAAGTATGGCAAGAATTTGAAGACACTGGCGATAAAGATTCTTCGGATGAAGAGTAGTCATAGCAGTGCTGATGATTTCTTTGATGAAATTTGCAAGTTTAGATATTTGAACCGCAAGATCGTTCGTATCGAATAGAAGCACAAGTGAGGCACTTTTCTCCTCATTTGTGGTTTTATTTGATCATTCTCTTTTGAATTCTCTTATGACAGGTTGATCGGCTCAAATGATTAACTTAGTTTGATCATTCTTTTACGAATGCTAATTGCTTGAATACCATATTCTTCGACGGGACGATCGATCAAAGATGATCAAAAAGACATTCAAGTTGATGTTTTTTTGCCTCCGAGC

mRNA sequence

AACACCCTCCCAAATCCAAACCCCCTCCCACCCCTCTCCTCTTCCAAACGTCTCTATAAGTGCGCTCCTTCTTCGTTCCCTCTCTCTCTCTCTACCTCTTTCTCTCTCTAGGTTGCCGCTTTTGCTTCTTCTTCCTCCAACCCCAACTCTCAGATCCTCTTCCCCACAATACCCACTTCCCACATTTCGCTAATTAATGGACTCACTCCCAGATGCTATTATTCAGTACATCTTGTCACATATGACCAATGCTCGCGACCTAGCTGTCTGCAATTGTGTATCCAAGCGTTGGAAAGACTCGACGCCCTACATTAAAAGTCTCTATTTCCCTCGCAATTCCTTCGACAGTCATTCGGGCGAGTCGAGTCCTGACGTCATTGTTTGCAGGATAGTTTCATCCATTGTTCGCTTGGAGGAGCTTGTTGTTTATAGTCCATTTACAAGTGCTGGTCTTGCTTCATGGCTGTCTAGTATCGGCCCCTCGCTTCGGCGACTCGAGCTACGAATGGATAATTTGGTTGATCTACAAGCTTGTCAAGAGAGCCCTTCCAAGTTGGAATACCTTAAATCTGCTGAAAAATTGGAGTCACTTAAATTATGGGGTGTCTTAATGACACATTCACCTAGGTGGGATGTGTTCCAAAAGCTAAAAAACCTTGAGATTGTTGGTGCCAAGTTAGAGGATCCTGCATTGAACTCTGCTCTTCGTGCATGTCCTAATCTATCCAATTTATTGCTCCTTGGCTGTGAAGGTTTAACTTCAGTTTCAATTGAGCTGAAGCACTTAGAACAGTGTAAGCTGGACTTCTATGGCTTGGGGAACTGCTCACTTATGATCAATTCCCCTAAACTTCAACTCCTTGAAGTTCAAGGATTTAGTTGGATTAGAGCCCGTGGGACAAGTTCCTTGACAAGTCTTTCAATTGCAAATAATGCAGGAAGAGTTTACATGGTGGATTTTGATAAGCTTGGTTCATTGGAGTCTCTATCCATAAGAGGAGTTCAATGGTGTTGGGATGCAATAAGCAAAATGCTTGAATGGGGGAGTGAGGTTAAACATCTTTACATGAAGGTTGAGTTCACTGGAGACTTTGATGCACTTGAGCCCTTCCCTGAGATTGACTTTGTTGAGTTTTTCAATCACCATCCAAAGTTGCAAAGGTTTGACATTCATGGAGCCATGTTTGCTGCACTTTGCCCCAAGAACAGCATTAAAAATGTCGATCCGGACTTTGTAATCTCGTGTTTGGAGGAAGTATCGATTTTGGTTCGGTCGCCGTTGAATGCCGAACAGAAGATGAATACTCTCGAGTCGTTGATAAAGTATGGCAAGAATTTGAAGACACTGGCGATAAAGATTCTTCGGATGAAGAGTAGTCATAGCAGTGCTGATGATTTCTTTGATGAAATTTGCAAGTTTAGATATTTGAACCGCAAGATCGTTCGTATCGAATAGAAGCACAAGTGAGGCACTTTTCTCCTCATTTGTGGTTTTATTTGATCATTCTCTTTTGAATTCTCTTATGACAGGTTGATCGGCTCAAATGATTAACTTAGTTTGATCATTCTTTTACGAATGCTAATTGCTTGAATACCATATTCTTCGACGGGACGATCGATCAAAGATGATCAAAAAGACATTCAAGTTGATGTTTTTTTGCCTCCGAGC

Coding sequence (CDS)

ATGGACTCACTCCCAGATGCTATTATTCAGTACATCTTGTCACATATGACCAATGCTCGCGACCTAGCTGTCTGCAATTGTGTATCCAAGCGTTGGAAAGACTCGACGCCCTACATTAAAAGTCTCTATTTCCCTCGCAATTCCTTCGACAGTCATTCGGGCGAGTCGAGTCCTGACGTCATTGTTTGCAGGATAGTTTCATCCATTGTTCGCTTGGAGGAGCTTGTTGTTTATAGTCCATTTACAAGTGCTGGTCTTGCTTCATGGCTGTCTAGTATCGGCCCCTCGCTTCGGCGACTCGAGCTACGAATGGATAATTTGGTTGATCTACAAGCTTGTCAAGAGAGCCCTTCCAAGTTGGAATACCTTAAATCTGCTGAAAAATTGGAGTCACTTAAATTATGGGGTGTCTTAATGACACATTCACCTAGGTGGGATGTGTTCCAAAAGCTAAAAAACCTTGAGATTGTTGGTGCCAAGTTAGAGGATCCTGCATTGAACTCTGCTCTTCGTGCATGTCCTAATCTATCCAATTTATTGCTCCTTGGCTGTGAAGGTTTAACTTCAGTTTCAATTGAGCTGAAGCACTTAGAACAGTGTAAGCTGGACTTCTATGGCTTGGGGAACTGCTCACTTATGATCAATTCCCCTAAACTTCAACTCCTTGAAGTTCAAGGATTTAGTTGGATTAGAGCCCGTGGGACAAGTTCCTTGACAAGTCTTTCAATTGCAAATAATGCAGGAAGAGTTTACATGGTGGATTTTGATAAGCTTGGTTCATTGGAGTCTCTATCCATAAGAGGAGTTCAATGGTGTTGGGATGCAATAAGCAAAATGCTTGAATGGGGGAGTGAGGTTAAACATCTTTACATGAAGGTTGAGTTCACTGGAGACTTTGATGCACTTGAGCCCTTCCCTGAGATTGACTTTGTTGAGTTTTTCAATCACCATCCAAAGTTGCAAAGGTTTGACATTCATGGAGCCATGTTTGCTGCACTTTGCCCCAAGAACAGCATTAAAAATGTCGATCCGGACTTTGTAATCTCGTGTTTGGAGGAAGTATCGATTTTGGTTCGGTCGCCGTTGAATGCCGAACAGAAGATGAATACTCTCGAGTCGTTGATAAAGTATGGCAAGAATTTGAAGACACTGGCGATAAAGATTCTTCGGATGAAGAGTAGTCATAGCAGTGCTGATGATTTCTTTGATGAAATTTGCAAGTTTAGATATTTGAACCGCAAGATCGTTCGTATCGAATAG

Protein sequence

MDSLPDAIIQYILSHMTNARDLAVCNCVSKRWKDSTPYIKSLYFPRNSFDSHSGESSPDVIVCRIVSSIVRLEELVVYSPFTSAGLASWLSSIGPSLRRLELRMDNLVDLQACQESPSKLEYLKSAEKLESLKLWGVLMTHSPRWDVFQKLKNLEIVGAKLEDPALNSALRACPNLSNLLLLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPKLQLLEVQGFSWIRARGTSSLTSLSIANNAGRVYMVDFDKLGSLESLSIRGVQWCWDAISKMLEWGSEVKHLYMKVEFTGDFDALEPFPEIDFVEFFNHHPKLQRFDIHGAMFAALCPKNSIKNVDPDFVISCLEEVSILVRSPLNAEQKMNTLESLIKYGKNLKTLAIKILRMKSSHSSADDFFDEICKFRYLNRKIVRIE

Homology

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BLAST of CmoCh11G015280 vs. ExPASy Swiss-Prot
Match: Q9SAC4 (F-box protein At1g10780 OS=Arabidopsis thaliana OX=3702 GN=At1g10780 PE=2 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 9.1e-157
Identity = 273/419 (65.16%), Postives = 333/419 (79.47%), Query Frame = 0


Query: 1   MDSLPDAIIQYILSHMTNARDLAVCNCVSKRWKDSTPYIKSLYFPRNSFDSHSGESSPDV 60
           MDSLPDAI+QYILS++T+ARD+A CNCVSKRWK+ST  +KS+ F RNSF+S       D 
Sbjct: 1   MDSLPDAILQYILSYLTSARDVAACNCVSKRWKESTDSVKSVVFHRNSFESIMETDDSDS 60

Query: 61  IVCRIVSSIVRLEELVVYSPFTSAGLASWLSSIGPSLRRLELRMDNLVDLQACQESPSKL 120
           IV +++SS  RLEELVVYSPFTS+GLASW+  +  SLR LELRMDNL   +   E P KL
Sbjct: 61  IVRKMISSSRRLEELVVYSPFTSSGLASWMMHVSSSLRLLELRMDNLASEEVVVEGPLKL 120

Query: 121 EYLKSAEKLESLKLWGVLMTHSPRWDVFQKLKNLEIVGAKLEDPALNSALRACPNLSNLL 180
           + +  A+ LE LKLWGVLM   P+WD+F  L++LEIVGAK++D +L+ ALRACPNLSNLL
Sbjct: 121 DCIGVAKNLEILKLWGVLMMSPPKWDMFPNLRSLEIVGAKMDDSSLSHALRACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPKLQLLEVQGFSWIRARGTSSLTS 240
           LL CEG+ S+SI+L +LE CKLDFYG GN  L++ S +L  L+VQG SWIR   T  L +
Sbjct: 181 LLACEGVKSISIDLPYLEHCKLDFYGQGNTLLVLTSQRLVSLDVQGCSWIRVPETKFLKN 240

Query: 241 LSIANNAGRVYMVDFDKLGSLESLSIRGVQWCWDAISKMLEWGSEVKHLYMKVEFTGDFD 300
           LSI++  GRVYMVDF+ L SLE+LSIRGVQWCWDAI  +L+   +VKHL+MKVEFTG+ +
Sbjct: 241 LSISSVTGRVYMVDFNNLSSLEALSIRGVQWCWDAICMILQQARDVKHLFMKVEFTGN-E 300

Query: 301 ALEPFPEIDFVEFFNHHPKLQRFDIHGAMFAALCPKNSIKNVDPDFVISCLEEVSILVRS 360
           AL+PFPEIDFVEFFN+HPKLQ FDIHGAMFAALC KNS+K ++  F I CLEEV I VRS
Sbjct: 301 ALQPFPEIDFVEFFNNHPKLQTFDIHGAMFAALCQKNSLKKLETGFTIPCLEEVVITVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTLAIKILRMKSSHSSADDFFDEICKFRYLNRKIVRIE 420
           PLNAEQKMNTLESL+KY + LK + I+ILRMKS+HSSADDF D+ICKFR++N  +V IE
Sbjct: 361 PLNAEQKMNTLESLVKYARGLKRMVIRILRMKSNHSSADDFCDDICKFRHMNEHLVHIE 418

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BLAST of CmoCh11G015280 vs. ExPASy TrEMBL
Match: A0A6J1ELN5 (F-box protein At1g10780-like OS=Cucurbita moschata OX=3662 GN=LOC111434493 PE=4 SV=1)

HSP 1 Score: 845.9 bits (2184), Expect = 7.3e-242
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0


Query: 1   MDSLPDAIIQYILSHMTNARDLAVCNCVSKRWKDSTPYIKSLYFPRNSFDSHSGESSPDV 60
           MDSLPDAIIQYILSHMTNARDLAVCNCVSKRWKDSTPYIKSLYFPRNSFDSHSGESSPDV
Sbjct: 1   MDSLPDAIIQYILSHMTNARDLAVCNCVSKRWKDSTPYIKSLYFPRNSFDSHSGESSPDV 60

Query: 61  IVCRIVSSIVRLEELVVYSPFTSAGLASWLSSIGPSLRRLELRMDNLVDLQACQESPSKL 120
           IVCRIVSSIVRLEELVVYSPFTSAGLASWLSSIGPSLRRLELRMDNLVDLQACQESPSKL
Sbjct: 61  IVCRIVSSIVRLEELVVYSPFTSAGLASWLSSIGPSLRRLELRMDNLVDLQACQESPSKL 120

Query: 121 EYLKSAEKLESLKLWGVLMTHSPRWDVFQKLKNLEIVGAKLEDPALNSALRACPNLSNLL 180
           EYLKSAEKLESLKLWGVLMTHSPRWDVFQKLKNLEIVGAKLEDPALNSALRACPNLSNLL
Sbjct: 121 EYLKSAEKLESLKLWGVLMTHSPRWDVFQKLKNLEIVGAKLEDPALNSALRACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPKLQLLEVQGFSWIRARGTSSLTS 240
           LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPKLQLLEVQGFSWIRARGTSSLTS
Sbjct: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPKLQLLEVQGFSWIRARGTSSLTS 240

Query: 241 LSIANNAGRVYMVDFDKLGSLESLSIRGVQWCWDAISKMLEWGSEVKHLYMKVEFTGDFD 300
           LSIANNAGRVYMVDFDKLGSLESLSIRGVQWCWDAISKMLEWGSEVKHLYMKVEFTGDFD
Sbjct: 241 LSIANNAGRVYMVDFDKLGSLESLSIRGVQWCWDAISKMLEWGSEVKHLYMKVEFTGDFD 300

Query: 301 ALEPFPEIDFVEFFNHHPKLQRFDIHGAMFAALCPKNSIKNVDPDFVISCLEEVSILVRS 360
           ALEPFPEIDFVEFFNHHPKLQRFDIHGAMFAALCPKNSIKNVDPDFVISCLEEVSILVRS
Sbjct: 301 ALEPFPEIDFVEFFNHHPKLQRFDIHGAMFAALCPKNSIKNVDPDFVISCLEEVSILVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTLAIKILRMKSSHSSADDFFDEICKFRYLNRKIVRIE 420
           PLNAEQKMNTLESLIKYGKNLKTLAIKILRMKSSHSSADDFFDEICKFRYLNRKIVRIE
Sbjct: 361 PLNAEQKMNTLESLIKYGKNLKTLAIKILRMKSSHSSADDFFDEICKFRYLNRKIVRIE 419

[Close]

BLAST of CmoCh11G015280 vs. ExPASy TrEMBL
Match: A0A6J1JKP5 (F-box protein At1g10780-like OS=Cucurbita maxima OX=3661 GN=LOC111486670 PE=4 SV=1)

HSP 1 Score: 837.0 bits (2161), Expect = 3.4e-239
Identity = 412/419 (98.33%), Postives = 417/419 (99.52%), Query Frame = 0


Query: 1   MDSLPDAIIQYILSHMTNARDLAVCNCVSKRWKDSTPYIKSLYFPRNSFDSHSGESSPDV 60
           MDSLPDAIIQYILSHMTNARD+AVCNCVSKRWKDSTPYIKSLYFPRNSFDSHSGESSPDV
Sbjct: 1   MDSLPDAIIQYILSHMTNARDVAVCNCVSKRWKDSTPYIKSLYFPRNSFDSHSGESSPDV 60

Query: 61  IVCRIVSSIVRLEELVVYSPFTSAGLASWLSSIGPSLRRLELRMDNLVDLQACQESPSKL 120
           IVCRIVSSIVRLEELVVYSPFTSAGLASWLSSIGPSLRRLELRMDNLVDLQACQ+SPSKL
Sbjct: 61  IVCRIVSSIVRLEELVVYSPFTSAGLASWLSSIGPSLRRLELRMDNLVDLQACQDSPSKL 120

Query: 121 EYLKSAEKLESLKLWGVLMTHSPRWDVFQKLKNLEIVGAKLEDPALNSALRACPNLSNLL 180
           EYLKSAEKLESLKLWGVLMTH+PRWDVFQKLKNLEIVGAK+EDPALNSALRACPNLSNLL
Sbjct: 121 EYLKSAEKLESLKLWGVLMTHTPRWDVFQKLKNLEIVGAKIEDPALNSALRACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPKLQLLEVQGFSWIRARGTSSLTS 240
           LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPKLQLLEVQGFSWIRARGTSSLTS
Sbjct: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPKLQLLEVQGFSWIRARGTSSLTS 240

Query: 241 LSIANNAGRVYMVDFDKLGSLESLSIRGVQWCWDAISKMLEWGSEVKHLYMKVEFTGDFD 300
           LSIANNAGRVYMVDFDKLGSLESLSIRGVQWCWDAISKMLEWGSEVKHLYMKVEFTGDFD
Sbjct: 241 LSIANNAGRVYMVDFDKLGSLESLSIRGVQWCWDAISKMLEWGSEVKHLYMKVEFTGDFD 300

Query: 301 ALEPFPEIDFVEFFNHHPKLQRFDIHGAMFAALCPKNSIKNVDPDFVISCLEEVSILVRS 360
           ALEPFPEIDFVEFFNHHPKLQ+FDIHGAMFAALCPKN IKNVDPDFVISCLEEVSILVRS
Sbjct: 301 ALEPFPEIDFVEFFNHHPKLQKFDIHGAMFAALCPKNCIKNVDPDFVISCLEEVSILVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTLAIKILRMKSSHSSADDFFDEICKFRYLNRKIVRIE 420
           PLNAEQKMNTLESLIKYGKNLKTL IKILRMKSSHSSADDFFDEICKFRYLNRKIVRIE
Sbjct: 361 PLNAEQKMNTLESLIKYGKNLKTLVIKILRMKSSHSSADDFFDEICKFRYLNRKIVRIE 419

[Close]

BLAST of CmoCh11G015280 vs. ExPASy TrEMBL
Match: A0A6J1HJ43 (F-box protein At1g10780-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464040 PE=4 SV=1)

HSP 1 Score: 767.7 bits (1981), Expect = 2.5e-218
Identity = 377/419 (89.98%), Postives = 398/419 (94.99%), Query Frame = 0


Query: 1   MDSLPDAIIQYILSHMTNARDLAVCNCVSKRWKDSTPYIKSLYFPRNSFDSHSGESSPDV 60
           MDSLPDAI QY+LSHM+NARD+AVCNCVSKRWK STPYIKSLYFPRNSFD+HSG  SPD+
Sbjct: 22  MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 81

Query: 61  IVCRIVSSIVRLEELVVYSPFTSAGLASWLSSIGPSLRRLELRMDNLVDLQACQESPSKL 120
           I+ RI+SSIV LEELVVYSPF+ AGLASWLSS+GPSLRRLELRMDNLVDLQACQ+S SKL
Sbjct: 82  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 141

Query: 121 EYLKSAEKLESLKLWGVLMTHSPRWDVFQKLKNLEIVGAKLEDPALNSALRACPNLSNLL 180
           E LKSA  LESLKLWGVLMTHSPRWDVFQKL+NLEIVGAKL+DPALN+ALRACPNLSNLL
Sbjct: 142 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 201

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPKLQLLEVQGFSWIRARGTSSLTS 240
           LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSP +QLLEVQG SWIRA GTSSL S
Sbjct: 202 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 261

Query: 241 LSIANNAGRVYMVDFDKLGSLESLSIRGVQWCWDAISKMLEWGSEVKHLYMKVEFTGDFD 300
           LSI+NNAGRVYMVDFD+L SLESLSIRGVQWCWDAISKMLE GSEVKHLYMKVEFTGDFD
Sbjct: 262 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 321

Query: 301 ALEPFPEIDFVEFFNHHPKLQRFDIHGAMFAALCPKNSIKNVDPDFVISCLEEVSILVRS 360
           ALEPFPEIDFVEFFN+HPKLQ+FDIHGAMFAALC KNS+KNVDPDFVISCLEEVS+ VRS
Sbjct: 322 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 381

Query: 361 PLNAEQKMNTLESLIKYGKNLKTLAIKILRMKSSHSSADDFFDEICKFRYLNRKIVRIE 420
           PLNAEQKMNTLESLIKYGKNLKT+ IKILRMKSSHSSADDFFDEICKFRY NRKIVRIE
Sbjct: 382 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 440

[Close]

BLAST of CmoCh11G015280 vs. ExPASy TrEMBL
Match: A0A6J1HLE6 (F-box protein At1g10780-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464040 PE=4 SV=1)

HSP 1 Score: 767.7 bits (1981), Expect = 2.5e-218
Identity = 377/419 (89.98%), Postives = 398/419 (94.99%), Query Frame = 0


Query: 1   MDSLPDAIIQYILSHMTNARDLAVCNCVSKRWKDSTPYIKSLYFPRNSFDSHSGESSPDV 60
           MDSLPDAI QY+LSHM+NARD+AVCNCVSKRWK STPYIKSLYFPRNSFD+HSG  SPD+
Sbjct: 1   MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60

Query: 61  IVCRIVSSIVRLEELVVYSPFTSAGLASWLSSIGPSLRRLELRMDNLVDLQACQESPSKL 120
           I+ RI+SSIV LEELVVYSPF+ AGLASWLSS+GPSLRRLELRMDNLVDLQACQ+S SKL
Sbjct: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120

Query: 121 EYLKSAEKLESLKLWGVLMTHSPRWDVFQKLKNLEIVGAKLEDPALNSALRACPNLSNLL 180
           E LKSA  LESLKLWGVLMTHSPRWDVFQKL+NLEIVGAKL+DPALN+ALRACPNLSNLL
Sbjct: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPKLQLLEVQGFSWIRARGTSSLTS 240
           LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSP +QLLEVQG SWIRA GTSSL S
Sbjct: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240

Query: 241 LSIANNAGRVYMVDFDKLGSLESLSIRGVQWCWDAISKMLEWGSEVKHLYMKVEFTGDFD 300
           LSI+NNAGRVYMVDFD+L SLESLSIRGVQWCWDAISKMLE GSEVKHLYMKVEFTGDFD
Sbjct: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300

Query: 301 ALEPFPEIDFVEFFNHHPKLQRFDIHGAMFAALCPKNSIKNVDPDFVISCLEEVSILVRS 360
           ALEPFPEIDFVEFFN+HPKLQ+FDIHGAMFAALC KNS+KNVDPDFVISCLEEVS+ VRS
Sbjct: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTLAIKILRMKSSHSSADDFFDEICKFRYLNRKIVRIE 420
           PLNAEQKMNTLESLIKYGKNLKT+ IKILRMKSSHSSADDFFDEICKFRY NRKIVRIE
Sbjct: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 419

[Close]

BLAST of CmoCh11G015280 vs. ExPASy TrEMBL
Match: A0A6J1HSM0 (F-box protein At1g10780-like OS=Cucurbita maxima OX=3661 GN=LOC111467046 PE=4 SV=1)

HSP 1 Score: 766.5 bits (1978), Expect = 5.6e-218
Identity = 377/419 (89.98%), Postives = 397/419 (94.75%), Query Frame = 0


Query: 1   MDSLPDAIIQYILSHMTNARDLAVCNCVSKRWKDSTPYIKSLYFPRNSFDSHSGESSPDV 60
           MDSLPDAI QYILSHM+NARD+AVCNCVSKRWK STPYIKSLYFPRNSFD+HSG  SPD+
Sbjct: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60

Query: 61  IVCRIVSSIVRLEELVVYSPFTSAGLASWLSSIGPSLRRLELRMDNLVDLQACQESPSKL 120
           I+ RI+SSIV LEELVVYSPF+ AGLASWLSS+GPSLRRLELRMDNLVDLQACQ+S SKL
Sbjct: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120

Query: 121 EYLKSAEKLESLKLWGVLMTHSPRWDVFQKLKNLEIVGAKLEDPALNSALRACPNLSNLL 180
           E LKSA  LESLKLWGVLMTHSPRWDVFQKL+NLEIVGAKL+DPALN+ALRACPNLSNLL
Sbjct: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPKLQLLEVQGFSWIRARGTSSLTS 240
           LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSP +QLLEVQG SWIRA GTSSL S
Sbjct: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240

Query: 241 LSIANNAGRVYMVDFDKLGSLESLSIRGVQWCWDAISKMLEWGSEVKHLYMKVEFTGDFD 300
           LSI+NN GRVYMVDFD+L SLESLSIRGVQWCWDAISKMLE GSEVKHLYMKVEFTGDFD
Sbjct: 241 LSISNNTGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300

Query: 301 ALEPFPEIDFVEFFNHHPKLQRFDIHGAMFAALCPKNSIKNVDPDFVISCLEEVSILVRS 360
           ALEPFPEIDFVEFFN+HPKLQ+FDIHGAMFAALC KNS+KNVDPDFVISCLEEVS+ VRS
Sbjct: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTLAIKILRMKSSHSSADDFFDEICKFRYLNRKIVRIE 420
           PLNAEQKMNTLESLIKYGKNLKT+ IKILRMKSSHSSADDFFDEICKFRY NRKIVRIE
Sbjct: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 419

[Close]

BLAST of CmoCh11G015280 vs. TAIR 10
Match: AT1G10780.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 554.7 bits (1428), Expect = 6.5e-158
Identity = 273/419 (65.16%), Postives = 333/419 (79.47%), Query Frame = 0


Query: 1   MDSLPDAIIQYILSHMTNARDLAVCNCVSKRWKDSTPYIKSLYFPRNSFDSHSGESSPDV 60
           MDSLPDAI+QYILS++T+ARD+A CNCVSKRWK+ST  +KS+ F RNSF+S       D 
Sbjct: 1   MDSLPDAILQYILSYLTSARDVAACNCVSKRWKESTDSVKSVVFHRNSFESIMETDDSDS 60

Query: 61  IVCRIVSSIVRLEELVVYSPFTSAGLASWLSSIGPSLRRLELRMDNLVDLQACQESPSKL 120
           IV +++SS  RLEELVVYSPFTS+GLASW+  +  SLR LELRMDNL   +   E P KL
Sbjct: 61  IVRKMISSSRRLEELVVYSPFTSSGLASWMMHVSSSLRLLELRMDNLASEEVVVEGPLKL 120

Query: 121 EYLKSAEKLESLKLWGVLMTHSPRWDVFQKLKNLEIVGAKLEDPALNSALRACPNLSNLL 180
           + +  A+ LE LKLWGVLM   P+WD+F  L++LEIVGAK++D +L+ ALRACPNLSNLL
Sbjct: 121 DCIGVAKNLEILKLWGVLMMSPPKWDMFPNLRSLEIVGAKMDDSSLSHALRACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPKLQLLEVQGFSWIRARGTSSLTS 240
           LL CEG+ S+SI+L +LE CKLDFYG GN  L++ S +L  L+VQG SWIR   T  L +
Sbjct: 181 LLACEGVKSISIDLPYLEHCKLDFYGQGNTLLVLTSQRLVSLDVQGCSWIRVPETKFLKN 240

Query: 241 LSIANNAGRVYMVDFDKLGSLESLSIRGVQWCWDAISKMLEWGSEVKHLYMKVEFTGDFD 300
           LSI++  GRVYMVDF+ L SLE+LSIRGVQWCWDAI  +L+   +VKHL+MKVEFTG+ +
Sbjct: 241 LSISSVTGRVYMVDFNNLSSLEALSIRGVQWCWDAICMILQQARDVKHLFMKVEFTGN-E 300

Query: 301 ALEPFPEIDFVEFFNHHPKLQRFDIHGAMFAALCPKNSIKNVDPDFVISCLEEVSILVRS 360
           AL+PFPEIDFVEFFN+HPKLQ FDIHGAMFAALC KNS+K ++  F I CLEEV I VRS
Sbjct: 301 ALQPFPEIDFVEFFNNHPKLQTFDIHGAMFAALCQKNSLKKLETGFTIPCLEEVVITVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTLAIKILRMKSSHSSADDFFDEICKFRYLNRKIVRIE 420
           PLNAEQKMNTLESL+KY + LK + I+ILRMKS+HSSADDF D+ICKFR++N  +V IE
Sbjct: 361 PLNAEQKMNTLESLVKYARGLKRMVIRILRMKSNHSSADDFCDDICKFRHMNEHLVHIE 418

The following BLAST results are available for this feature:

BLAST of CmoCh11G015280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAC4	9.1e-157	65.16	F-box protein At1g10780 OS=Arabidopsis thaliana OX=3702 GN=At1g10780 PE=2 SV=1	[more]

BLAST of CmoCh11G015280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ELN5	7.3e-242	100.00	F-box protein At1g10780-like OS=Cucurbita moschata OX=3662 GN=LOC111434493 PE=4 ...	[more]
A0A6J1JKP5	3.4e-239	98.33	F-box protein At1g10780-like OS=Cucurbita maxima OX=3661 GN=LOC111486670 PE=4 SV...	[more]
A0A6J1HJ43	2.5e-218	89.98	F-box protein At1g10780-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1HLE6	2.5e-218	89.98	F-box protein At1g10780-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1HSM0	5.6e-218	89.98	F-box protein At1g10780-like OS=Cucurbita maxima OX=3661 GN=LOC111467046 PE=4 SV...	[more]

BLAST of CmoCh11G015280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10780.1	6.5e-158	65.16	F-box/RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.50		coord: 1..36 e-value: 1.4E-5 score: 26.8
None	No IPR available	PANTHER	PTHR32212:SF248	CYCLIN-LIKE F-BOX	coord: 1..417
None	No IPR available	PANTHER	PTHR32212	CYCLIN-LIKE F-BOX	coord: 1..417
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 7..297
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 2..36 e-value: 4.6E-6 score: 26.4
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 144..412 e-value: 1.1E-12 score: 49.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G015280.1	CmoCh11G015280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding