CmoCh11G014740 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G014740
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionprotein PELPK1-like
LocationCmo_Chr11: 10367744 .. 10368071 (+)
RNA-Seq ExpressionCmoCh11G014740
SyntenyCmoCh11G014740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACTACCCAAGGTGCCTGAAGAGCTTTCGAAGCCAGAAATACCCAGTTTGTCAAAGCCCGAAGTTCCTCCATTGTCGAAGGTTTTGTTACCTCCTTTGGAAAAGCCTAAAATACCCGAATTGTCGAAACCTGAGCTCCCAAAATTACCTCAATTACCTAAACTTGAGGTTCCCGAAGTACCAAAATTGCCCAACTTGCCTTAAACCTGAACTCCCTAAATTGCCGGAATTAACACCTCTCCCAAAGCCTGTTTTGCCTACCCTTCCAAATGACATTCCTATCCCTTCATTCAACCCACCACATACATCTACCACTAAACCTTGA

mRNA sequence

ATGCCACTACCCAAGGTGCCTGAAGAGCTTTCGAAGCCAGAAATACCCAGTTTGTCAAAGCCCGAAGTTCCTCCATTGTCGAAGGTTTTGTTACCTCCTTTGGAAAAGCCTAAAATACCCGAATTGTCGAAACCTGAGCTCCCAAAATTACCTCAATTACCTAAACTTGAGTACCAAAATTGCCCAACTTGCCTTAAACCTGAACTCCCTAAATTGCCGGAATTAACACCTCTCCCAAAGCCTGTTTTGCCTACCCTTCCAAATGACATTCCTATCCCTTCATTCAACCCACCACATACATCTACCACTAAACCTTGA

Coding sequence (CDS)

ATGCCACTACCCAAGGTGCCTGAAGAGCTTTCGAAGCCAGAAATACCCAGTTTGTCAAAGCCCGAAGTTCCTCCATTGTCGAAGGTTTTGTTACCTCCTTTGGAAAAGCCTAAAATACCCGAATTGTCGAAACCTGAGCTCCCAAAATTACCTCAATTACCTAAACTTGAGTACCAAAATTGCCCAACTTGCCTTAAACCTGAACTCCCTAAATTGCCGGAATTAACACCTCTCCCAAAGCCTGTTTTGCCTACCCTTCCAAATGACATTCCTATCCCTTCATTCAACCCACCACATACATCTACCACTAAACCTTGA

Protein sequence

MPLPKVPEELSKPEIPSLSKPEVPPLSKVLLPPLEKPKIPELSKPELPKLPQLPKLEYQNCPTCLKPELPKLPELTPLPKPVLPTLPNDIPIPSFNPPHTSTTKP
Homology
BLAST of CmoCh11G014740 vs. ExPASy Swiss-Prot
Match: Q9LXB8 (Protein PELPK1 OS=Arabidopsis thaliana OX=3702 GN=PELPK1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-10
Identity = 47/106 (44.34%), Postives = 63/106 (59.43%), Query Frame = 0

Query: 3   LPKVPE-----ELSKPEI---PSLSKPEVPPLSKVLLPPLEKPKIPELSKPELPKLPQLP 62
           LPK+PE     E+ KPE+   P + KPE+P + +V  P  E P +PE+ K E PK P++P
Sbjct: 260 LPKMPELPKMPEIQKPELPKMPEIQKPELPKVPEV--PKPELPTVPEVPKSEAPKFPEIP 319

Query: 63  KLEYQNCPTCLKPELPKLPELT-----PLPKPVLPTLPNDIPIPSF 96
           K E    P   KPELPK+PE+T      +PKP LPT+P    +P F
Sbjct: 320 KPELPKIPEVPKPELPKVPEITKPAVPEIPKPELPTMPQLPKLPEF 363

BLAST of CmoCh11G014740 vs. ExPASy Swiss-Prot
Match: Q9LXB7 (Protein PELPK2 OS=Arabidopsis thaliana OX=3702 GN=PELPK2 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.7e-07
Identity = 45/95 (47.37%), Postives = 57/95 (60.00%), Query Frame = 0

Query: 9   ELSKPEIPS---LSKPEVPPLSKVLLPPLEKPKIPELSKPELPKLPQLPKLEYQNCPTCL 68
           E  KPEIP+   L KPE+P L +   P LE PK+PE+ KPE+PKLP++ K E    PT  
Sbjct: 37  EEPKPEIPTFPELPKPEMPKLPE--FPKLELPKLPEIPKPEMPKLPEIQKPE---LPTF- 96

Query: 69  KPELPKLPELTPLPKPVLPTL--PNDIPIPSFNPP 99
            PELPK+PE      P LP L  P +  +P+F  P
Sbjct: 97  -PELPKMPEFPKFDFPKLPELPKPEETKVPAFTMP 124

BLAST of CmoCh11G014740 vs. ExPASy TrEMBL
Match: A0A6J1JIS8 (protein PELPK2-like OS=Cucurbita maxima OX=3661 GN=LOC111486194 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.7e-36
Identity = 88/108 (81.48%), Postives = 92/108 (85.19%), Query Frame = 0

Query: 1   MPLPKVPEELSKPEIPSLSKPEVPPLSKVLLPPLEKPKIPELSKPELPKLPQLPKL---E 60
           MPLPKVPEEL KPE+PSLSKPE+PPL KV LPPLEKPK+PEL KPELPKLPQLPK    E
Sbjct: 37  MPLPKVPEELPKPEVPSLSKPELPPLPKVELPPLEKPKVPELPKPELPKLPQLPKFEVPE 96

Query: 61  YQNCPTCLKPELPKLPELTPLPKPVLPTLPNDIPIPSFNPPHTSTTKP 106
               P   KPE+PKLPELTPLPKPVLPTLP DIPIPSFNPPHTSTTKP
Sbjct: 97  VPKLPNLPKPEVPKLPELTPLPKPVLPTLPKDIPIPSFNPPHTSTTKP 144

BLAST of CmoCh11G014740 vs. ExPASy TrEMBL
Match: A0A6J1EJ10 (protein PELPK1-like OS=Cucurbita moschata OX=3662 GN=LOC111434586 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.1e-33
Identity = 85/108 (78.70%), Postives = 89/108 (82.41%), Query Frame = 0

Query: 1   MPLPKVPEELSKPEIPSLSKPEVPPLSKVLLPPLEKPKIPELSKPELPKLPQLPKL---E 60
           MPLPKV EEL KPE+PSLSKPE+PPL KV LPPLE P++PE SKPELPKLPQLPK    E
Sbjct: 37  MPLPKVFEELLKPELPSLSKPELPPLPKVELPPLETPEVPEFSKPELPKLPQLPKFDVPE 96

Query: 61  YQNCPTCLKPELPKLPELTPLPKPVLPTLPNDIPIPSFNPPHTSTTKP 106
               P   KPELPKLPELTPLPKPVLPTLP DIPIPSFNPPHTST KP
Sbjct: 97  VPELPNVPKPELPKLPELTPLPKPVLPTLPKDIPIPSFNPPHTSTIKP 144

BLAST of CmoCh11G014740 vs. ExPASy TrEMBL
Match: A0A6J1EHY6 (protein PELPK1-like OS=Cucurbita moschata OX=3662 GN=LOC111434525 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.0e-28
Identity = 80/108 (74.07%), Postives = 83/108 (76.85%), Query Frame = 0

Query: 1   MPLPKVPEELSKPEIPSLSKPEVPPLSKVLLPPLEKPKIPELSKPELPKLPQLPKLE--- 60
           MPL KVPEEL KPE+PSLSK E+PPL KV LPPLEKPK  EL K ELPKL QL K E   
Sbjct: 37  MPLSKVPEELPKPEVPSLSKLELPPLPKVELPPLEKPKESELPKSELPKLSQLSKFEVPK 96

Query: 61  YQNCPTCLKPELPKLPELTPLPKPVLPTLPNDIPIPSFNPPHTSTTKP 106
               P   KP+LPKLPELTPLPKP LPTLP DIPIPSFNP HTSTTKP
Sbjct: 97  VPKLPNLPKPKLPKLPELTPLPKPDLPTLPKDIPIPSFNPSHTSTTKP 144

BLAST of CmoCh11G014740 vs. ExPASy TrEMBL
Match: A0A6J1EPY6 (protein PELPK1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434584 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.0e-27
Identity = 77/105 (73.33%), Postives = 83/105 (79.05%), Query Frame = 0

Query: 3   LPKVPE--ELSKPEIPSLSKPEVPPLSKVLLPPLEKPKIPELSKPELPKLPQLPKLEYQN 62
           LPK+P+   L KP++P LSKPEVP L +   PPLEKPK+PELSK ELP LPQLPKLE   
Sbjct: 127 LPKLPQLPPLEKPKMPELSKPEVPKLPQ--FPPLEKPKMPELSKLELPTLPQLPKLEAPV 186

Query: 63  CPTCLKPELPKLPELTPLPKPVLPTLPNDIPIPSFNPPHTSTTKP 106
            P   KPELPKLPE TPLPKPVLPTLP DIPIPSFNPPHTST KP
Sbjct: 187 VPELPKPELPKLPEFTPLPKPVLPTLPKDIPIPSFNPPHTSTIKP 229

BLAST of CmoCh11G014740 vs. ExPASy TrEMBL
Match: A0A6J1JIK1 (protein PELPK1 OS=Cucurbita maxima OX=3661 GN=LOC111486123 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.1e-27
Identity = 76/105 (72.38%), Postives = 81/105 (77.14%), Query Frame = 0

Query: 3   LPKVPE--ELSKPEIPSLSKPEVPPLSKVLLPPLEKPKIPELSKPELPKLPQLPKLEYQN 62
           LPK+PE   L KP++P L KPEVP L +   PPLEKPK+PELSKPELPKLPQLPKLE   
Sbjct: 149 LPKLPELPPLEKPKMPELPKPEVPKLPQ--FPPLEKPKVPELSKPELPKLPQLPKLEVPV 208

Query: 63  CPTCLKPELPKLPELTPLPKPVLPTLPNDIPIPSFNPPHTSTTKP 106
            P   KP LPKLPE TPLPK V PTLP DIPIPSFNPPHTST KP
Sbjct: 209 VPELPKPNLPKLPEFTPLPKLVFPTLPKDIPIPSFNPPHTSTLKP 251

BLAST of CmoCh11G014740 vs. TAIR 10
Match: AT5G09530.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-11
Identity = 47/106 (44.34%), Postives = 63/106 (59.43%), Query Frame = 0

Query: 3   LPKVPE-----ELSKPEI---PSLSKPEVPPLSKVLLPPLEKPKIPELSKPELPKLPQLP 62
           LPK+PE     E+ KPE+   P + KPE+P + +V  P  E P +PE+ K E PK P++P
Sbjct: 260 LPKMPELPKMPEIQKPELPKMPEIQKPELPKVPEV--PKPELPTVPEVPKSEAPKFPEIP 319

Query: 63  KLEYQNCPTCLKPELPKLPELT-----PLPKPVLPTLPNDIPIPSF 96
           K E    P   KPELPK+PE+T      +PKP LPT+P    +P F
Sbjct: 320 KPELPKIPEVPKPELPKVPEITKPAVPEIPKPELPTMPQLPKLPEF 363

BLAST of CmoCh11G014740 vs. TAIR 10
Match: AT5G09520.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 54.3 bits (129), Expect = 6.9e-08
Identity = 45/95 (47.37%), Postives = 57/95 (60.00%), Query Frame = 0

Query: 9   ELSKPEIPS---LSKPEVPPLSKVLLPPLEKPKIPELSKPELPKLPQLPKLEYQNCPTCL 68
           E  KPEIP+   L KPE+P L +   P LE PK+PE+ KPE+PKLP++ K E    PT  
Sbjct: 37  EEPKPEIPTFPELPKPEMPKLPE--FPKLELPKLPEIPKPEMPKLPEIQKPE---LPTF- 96

Query: 69  KPELPKLPELTPLPKPVLPTL--PNDIPIPSFNPP 99
            PELPK+PE      P LP L  P +  +P+F  P
Sbjct: 97  -PELPKMPEFPKFDFPKLPELPKPEETKVPAFTMP 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LXB83.2e-1044.34Protein PELPK1 OS=Arabidopsis thaliana OX=3702 GN=PELPK1 PE=2 SV=1[more]
Q9LXB79.7e-0747.37Protein PELPK2 OS=Arabidopsis thaliana OX=3702 GN=PELPK2 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1JIS82.7e-3681.48protein PELPK2-like OS=Cucurbita maxima OX=3661 GN=LOC111486194 PE=4 SV=1[more]
A0A6J1EJ102.1e-3378.70protein PELPK1-like OS=Cucurbita moschata OX=3662 GN=LOC111434586 PE=4 SV=1[more]
A0A6J1EHY66.0e-2874.07protein PELPK1-like OS=Cucurbita moschata OX=3662 GN=LOC111434525 PE=4 SV=1[more]
A0A6J1EPY63.0e-2773.33protein PELPK1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434584 PE=... [more]
A0A6J1JIK15.1e-2772.38protein PELPK1 OS=Cucurbita maxima OX=3661 GN=LOC111486123 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G09530.12.3e-1144.34hydroxyproline-rich glycoprotein family protein [more]
AT5G09520.16.9e-0847.37hydroxyproline-rich glycoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G014740.1CmoCh11G014740.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane