CmoCh11G013450 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G013450
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptiontype IV secretion system protein virB10-like
LocationCmo_Chr11: 9320893 .. 9321282 (-)
RNA-Seq ExpressionCmoCh11G013450
SyntenyCmoCh11G013450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGTTCCCCTCGACCAGCTCCAACCCCCGCCCTCTGCCGCCGCCATACACCCCGCCCAGGGCTCCGTCGGCCCCGTCATCGCCGTCCTTGCAGTGATTTCCATCCTCGGCTTCATTGCCGGCATGATCGGCCGCGTCTGCTTTGGCCGTCCCGTTTTTGGCTACAACGCCCAGTACGACGTCGAAGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGGTCTCTAGACCCTCCCCCGCATCTCCGCCCCCCGCCACCGATCGAAGCTATTCCGGTGTCGGAGCCGCTTGGTGGGCCGCCGAACATCAAAGAAGGTGGCGATGGCGATAGGGAACGCGAGAATCTGCAGTCGGTGGCTCCCGGCAGTGGCGGTGAGTCGTGA

mRNA sequence

ATGTCCGTTCCCCTCGACCAGCTCCAACCCCCGCCCTCTGCCGCCGCCATACACCCCGCCCAGGGCTCCGTCGGCCCCGTCATCGCCGTCCTTGCAGTGATTTCCATCCTCGGCTTCATTGCCGGCATGATCGGCCGCGTCTGCTTTGGCCGTCCCGTTTTTGGCTACAACGCCCAGTACGACGTCGAAGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGGTCTCTAGACCCTCCCCCGCATCTCCGCCCCCCGCCACCGATCGAAGCTATTCCGGTGTCGGAGCCGCTTGGTGGGCCGCCGAACATCAAAGAAGGTGGCGATGGCGATAGGGAACGCGAGAATCTGCAGTCGGTGGCTCCCGGCAGTGGCGGTGAGTCGTGA

Coding sequence (CDS)

ATGTCCGTTCCCCTCGACCAGCTCCAACCCCCGCCCTCTGCCGCCGCCATACACCCCGCCCAGGGCTCCGTCGGCCCCGTCATCGCCGTCCTTGCAGTGATTTCCATCCTCGGCTTCATTGCCGGCATGATCGGCCGCGTCTGCTTTGGCCGTCCCGTTTTTGGCTACAACGCCCAGTACGACGTCGAAGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGGTCTCTAGACCCTCCCCCGCATCTCCGCCCCCCGCCACCGATCGAAGCTATTCCGGTGTCGGAGCCGCTTGGTGGGCCGCCGAACATCAAAGAAGGTGGCGATGGCGATAGGGAACGCGAGAATCTGCAGTCGGTGGCTCCCGGCAGTGGCGGTGAGTCGTGA

Protein sequence

MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLGGPPNIKEGGDGDRERENLQSVAPGSGGES
Homology
BLAST of CmoCh11G013450 vs. ExPASy TrEMBL
Match: A0A6J1ELS6 (uncharacterized protein LOC111434531 OS=Cucurbita moschata OX=3662 GN=LOC111434531 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.0e-66
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQY 60
           MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQY
Sbjct: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQY 60

Query: 61  DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLGGPPNIKEGGDGDRERENLQS 120
           DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLGGPPNIKEGGDGDRERENLQS
Sbjct: 61  DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLGGPPNIKEGGDGDRERENLQS 120

Query: 121 VAPGSGGES 130
           VAPGSGGES
Sbjct: 121 VAPGSGGES 129

BLAST of CmoCh11G013450 vs. ExPASy TrEMBL
Match: A0A6J1JMK0 (uncharacterized protein LOC111486567 OS=Cucurbita maxima OX=3661 GN=LOC111486567 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.8e-61
Identity = 121/129 (93.80%), Postives = 125/129 (96.90%), Query Frame = 0

Query: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQY 60
           MSVPLDQLQPPP+AAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNA Y
Sbjct: 1   MSVPLDQLQPPPAAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60

Query: 61  DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLGGPPNIKEGGDGDRERENLQS 120
           DVEDWVEKKCA+CLDGSLDPPP LRPPPPIEAIPV+EPLGGPPNIKE GDGD+ERENLQS
Sbjct: 61  DVEDWVEKKCATCLDGSLDPPPLLRPPPPIEAIPVAEPLGGPPNIKEDGDGDKERENLQS 120

Query: 121 VAPGSGGES 130
           V PGSGGES
Sbjct: 121 VPPGSGGES 129

BLAST of CmoCh11G013450 vs. ExPASy TrEMBL
Match: A0A6J1IBA8 (uncharacterized protein LOC111470940 OS=Cucurbita maxima OX=3661 GN=LOC111470940 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.9e-44
Identity = 97/130 (74.62%), Postives = 107/130 (82.31%), Query Frame = 0

Query: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQY 60
           MS P DQLQPPP+A   H   GSVGPVIAVLAVISILG IAG+IGR+C GRPVFGY A Y
Sbjct: 1   MSTPFDQLQPPPTA---HSGHGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHY 60

Query: 61  DVEDWVEKKCASCLDGSLDPPP---HLRPPPPIEAIPVSEPLGGPPNIKEGGDGDREREN 120
           DVE+WVEKKCASCLDGSLDPPP   HLR PPP++A+PV EPLGGPP IK+G   D +REN
Sbjct: 61  DVEEWVEKKCASCLDGSLDPPPPPAHLRHPPPLDAVPVVEPLGGPPEIKQG--ADEKREN 120

Query: 121 LQSVAPGSGG 128
           LQS APG+GG
Sbjct: 121 LQSAAPGTGG 125

BLAST of CmoCh11G013450 vs. ExPASy TrEMBL
Match: A0A5A7SPN0 (Type IV secretion system protein virB10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G00320 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.5e-44
Identity = 97/137 (70.80%), Postives = 110/137 (80.29%), Query Frame = 0

Query: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQY 60
           MS P+DQLQPPP    +H +  SVGP+IAVLAVISILG IAGMIGR+C GRPVFGY A Y
Sbjct: 1   MSTPIDQLQPPP---PLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHY 60

Query: 61  DVEDWVEKKCASCLDGSLD-------PPPHLRPPPPIEAIPVSEPLGG-PPNIKEGGDGD 120
           DVEDWVEKKCASCLDGSLD       PPPHLR PPP++++PV+EPLGG PP IK+G D D
Sbjct: 61  DVEDWVEKKCASCLDGSLDPPPPPPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQGADAD 120

Query: 121 RERENLQSVAPGSGGES 130
            + ENLQS APG+GGES
Sbjct: 121 AKGENLQSAAPGTGGES 134

BLAST of CmoCh11G013450 vs. ExPASy TrEMBL
Match: A0A1S3C1T9 (type IV secretion system protein virB10-like OS=Cucumis melo OX=3656 GN=LOC103495668 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.5e-44
Identity = 97/137 (70.80%), Postives = 110/137 (80.29%), Query Frame = 0

Query: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQY 60
           MS P+DQLQPPP    +H +  SVGP+IAVLAVISILG IAGMIGR+C GRPVFGY A Y
Sbjct: 1   MSTPIDQLQPPP---PLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHY 60

Query: 61  DVEDWVEKKCASCLDGSLD-------PPPHLRPPPPIEAIPVSEPLGG-PPNIKEGGDGD 120
           DVEDWVEKKCASCLDGSLD       PPPHLR PPP++++PV+EPLGG PP IK+G D D
Sbjct: 61  DVEDWVEKKCASCLDGSLDPPPPPPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQGADAD 120

Query: 121 RERENLQSVAPGSGGES 130
            + ENLQS APG+GGES
Sbjct: 121 AKGENLQSAAPGTGGES 134

BLAST of CmoCh11G013450 vs. TAIR 10
Match: AT2G26520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-11
Identity = 42/122 (34.43%), Postives = 61/122 (50.00%), Query Frame = 0

Query: 2   SVPLDQLQPPP-------SAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVF 61
           S+PL   QPPP       S++       ++GP IAV  V+++L  +A +IGR+C G+ + 
Sbjct: 3   SMPL-YWQPPPATEVSQDSSSVSSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTIL 62

Query: 62  GYNAQYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLGGPPNIKEGGDGDRE 117
           GY   YD+E W E +C SC+DG + P      P P    P+     G     EG   D +
Sbjct: 63  GY-GDYDMERWAESRCGSCIDGHIHPHRPSPSPTPPPRQPLHHTSSGVSAESEGHVADLD 122

BLAST of CmoCh11G013450 vs. TAIR 10
Match: AT3G57500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 40/110 (36.36%), Postives = 56/110 (50.91%), Query Frame = 0

Query: 6   DQLQPPPSAAAIHPA----------QGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFG 65
           DQL   P+   I P             S+  ++ VLAVI+IL  +AG+  R+C GR +  
Sbjct: 10  DQLSTTPTTIYIDPPSQDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRHL-S 69

Query: 66  YNAQYDVEDWVEKKCASCLDGSL-------DPPPHLRPPPPIEAIPVSEP 99
           +   +D+E WVE+KC SC+D  +        PPP   PPPP  A   S+P
Sbjct: 70  HGGDHDIEGWVERKCRSCIDAGIPAVSAAPSPPP---PPPPATAEERSKP 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1ELS64.0e-66100.00uncharacterized protein LOC111434531 OS=Cucurbita moschata OX=3662 GN=LOC1114345... [more]
A0A6J1JMK01.8e-6193.80uncharacterized protein LOC111486567 OS=Cucurbita maxima OX=3661 GN=LOC111486567... [more]
A0A6J1IBA81.9e-4474.62uncharacterized protein LOC111470940 OS=Cucurbita maxima OX=3661 GN=LOC111470940... [more]
A0A5A7SPN02.5e-4470.80Type IV secretion system protein virB10-like OS=Cucumis melo var. makuwa OX=1194... [more]
A0A1S3C1T92.5e-4470.80type IV secretion system protein virB10-like OS=Cucumis melo OX=3656 GN=LOC10349... [more]
Match NameE-valueIdentityDescription
AT2G26520.13.7e-1134.43unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G57500.11.2e-0936.36unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 128..129
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..129
NoneNo IPR availablePANTHERPTHR33429:SF2OS01G0888850 PROTEINcoord: 1..87
NoneNo IPR availablePANTHERPTHR33429OS02G0708000 PROTEIN-RELATEDcoord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G013450.1CmoCh11G013450.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane