CmoCh11G013250 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G013250
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description4-hydroxy-3-methylbut-2-enyl diphosphate reductase
LocationCmo_Chr11: 9155725 .. 9157487 (-)
RNA-Seq ExpressionCmoCh11G013250
SyntenyCmoCh11G013250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTCACTCGAGGTATCTGTTGAACACAACTCTTTGTGAGAAACACTCACTCTTTATTAACACTAATCGAGAAGAGATTACAAGACACTCTATAATAAATACTAAACAATTTATTCCTAAAATACCTTAATTCTTTTCCTAAAAATAGGCTTAGAATATCATCAGTTAACTGATGCTTTGGAGCCCTCATTATCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCTCTTGTTGAAGTTCGTATCGACAAGTTGCAAAACAGTATTTGCTTGTCTTGCATACTTTTAGTTGTCACTGGTGTGTGTATCTAACCTTTTATGTCCTATTAGGAGCGTCAAGATGCGATGTACAAGCTAGTAGAGGCAAAACTGGACCTCATGTTAGTTGTTGGTGGATGGAATTCCAGTGATACCTCTCATCTTCAAGAGATAGCCGAGGAGCGAGGAATTCCATCTTATTGGATTGACAGTGAGCAGAGAATAGGCCCAGGAAACAGAATAGCTTACAAACTGAATGTAAGTTACCCTACAGATTTCAGCTCTAATCCCTTCTAGTTTCTTGGTTCACTTTTCAATTTGGCATTACATTGTAAAGCCCACCTTTTCTTTCCTTGATTACTCATCGTTTGTCATCCTTGTGAATCCATGTTAGCATGGGGAGTTAGTTGAGAAGGAGAATTGGCTACCCAAGGGTCCTATCACAATCGGTGTTACATCCGGTGCCTCGACCCCCCGATAA

mRNA sequence

ATGTTCTCACTCGAGGAGCGTCAAGATGCGATGTACAAGCTAGTAGAGGCAAAACTGGACCTCATGTTAGTTGTTGGTGGATGGAATTCCAGTGATACCTCTCATCTTCAAGAGATAGCCGAGGAGCGAGGAATTCCATCTTATTGGATTGACAGTGAGCAGAGAATAGGCCCAGGAAACAGAATAGCTTACAAACTGAATCATGGGGAGTTAGTTGAGAAGGAGAATTGGCTACCCAAGGGTCCTATCACAATCGGTGTTACATCCGGTGCCTCGACCCCCCGATAA

Coding sequence (CDS)

ATGTTCTCACTCGAGGAGCGTCAAGATGCGATGTACAAGCTAGTAGAGGCAAAACTGGACCTCATGTTAGTTGTTGGTGGATGGAATTCCAGTGATACCTCTCATCTTCAAGAGATAGCCGAGGAGCGAGGAATTCCATCTTATTGGATTGACAGTGAGCAGAGAATAGGCCCAGGAAACAGAATAGCTTACAAACTGAATCATGGGGAGTTAGTTGAGAAGGAGAATTGGCTACCCAAGGGTCCTATCACAATCGGTGTTACATCCGGTGCCTCGACCCCCCGATAA

Protein sequence

MFSLEERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGPITIGVTSGASTPR
Homology
[Close]
BLAST of CmoCh11G013250 vs. ExPASy Swiss-Prot
Match: Q6AVG6 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ISPH PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.4e-41
Identity = 77/90 (85.56%), Postives = 86/90 (95.56%), Query Frame = 0 

Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMY+LV+ K+DL+LVVGGWNSS+TSHLQEI E  GIPSYWIDSEQRIGPGN+I+Y
Sbjct: 347 QERQDAMYQLVKEKVDLILVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISY 406

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLP+GPITIGVTSGASTP
Sbjct: 407 KLNHGELVEKENWLPEGPITIGVTSGASTP 436

[Close]
BLAST of CmoCh11G013250 vs. ExPASy Swiss-Prot
Match: Q94B35 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISPH PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.2e-41
Identity = 77/90 (85.56%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDA+Y+LVE K+DLMLVVGGWNSS+TSHLQEI+E RGIPSYWIDSE+RIGPGN+IAY
Sbjct: 354 QERQDAIYELVEEKIDLMLVVGGWNSSNTSHLQEISEARGIPSYWIDSEKRIGPGNKIAY 413

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KL++GELVEKEN+LPKGPITIGVTSGASTP
Sbjct: 414 KLHYGELVEKENFLPKGPITIGVTSGASTP 443

[Close]
BLAST of CmoCh11G013250 vs. ExPASy Swiss-Prot
Match: B8HWD3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=ispH PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-30
Identity = 62/90 (68.89%), Postives = 75/90 (83.33%), Query Frame = 0 

Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAM+KLVE  LDLM+V+GG+NSS+T+HLQEI+ ER IPSY IDS  RIGPGNR+ +
Sbjct: 293 QERQDAMFKLVEYPLDLMVVIGGFNSSNTTHLQEISIEREIPSYHIDSADRIGPGNRVEH 352

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           K  H  L  KENWLP+GPI +G+TSGASTP
Sbjct: 353 KPLHRPLEIKENWLPEGPIVVGITSGASTP 382

[Close]
BLAST of CmoCh11G013250 vs. ExPASy Swiss-Prot
Match: Q31S64 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=ispH PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-29
Identity = 59/90 (65.56%), Postives = 75/90 (83.33%), Query Frame = 0 

Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAM++LVE  LDL++V+GG+NSS+T+HLQEIA ER IPS+ ID+ +RIGPGNRI +
Sbjct: 292 QERQDAMFQLVEEPLDLIVVIGGFNSSNTTHLQEIAIERQIPSFHIDAAERIGPGNRIEH 351

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           K  H +L   E WLP GP+TIG+TSGASTP
Sbjct: 352 KPLHTDLTTTEPWLPAGPLTIGITSGASTP 381

[Close]
BLAST of CmoCh11G013250 vs. ExPASy Swiss-Prot
Match: Q5N249 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=ispH PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-29
Identity = 59/90 (65.56%), Postives = 75/90 (83.33%), Query Frame = 0 

Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAM++LVE  LDL++V+GG+NSS+T+HLQEIA ER IPS+ ID+ +RIGPGNRI +
Sbjct: 292 QERQDAMFQLVEEPLDLIVVIGGFNSSNTTHLQEIAIERQIPSFHIDAAERIGPGNRIEH 351

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           K  H +L   E WLP GP+TIG+TSGASTP
Sbjct: 352 KPLHTDLTTTEPWLPAGPLTIGITSGASTP 381

[Close]
BLAST of CmoCh11G013250 vs. ExPASy TrEMBL
Match: A0A6J1C4Z2 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111007971 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.2e-44
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY
Sbjct: 352 QERQDAMYKLVEGKLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 411

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLPKGPITIGVTSGASTP
Sbjct: 412 KLNHGELVEKENWLPKGPITIGVTSGASTP 441

[Close]
BLAST of CmoCh11G013250 vs. ExPASy TrEMBL
Match: A0A6J1GNC1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111455494 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.3e-44
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE K+DLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY
Sbjct: 356 QERQDAMYKLVEGKVDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 415

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLPKGPITIGVTSGASTP
Sbjct: 416 KLNHGELVEKENWLPKGPITIGVTSGASTP 445

[Close]
BLAST of CmoCh11G013250 vs. ExPASy TrEMBL
Match: A0A6J1I4K4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470927 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.1e-43
Identity = 85/90 (94.44%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE K+DLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY
Sbjct: 356 QERQDAMYKLVEGKVDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 415

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVE+ENWLPKGPITIGVTSGASTP
Sbjct: 416 KLNHGELVERENWLPKGPITIGVTSGASTP 445

[Close]
BLAST of CmoCh11G013250 vs. ExPASy TrEMBL
Match: A0A6A1V3D3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Morella rubra OX=262757 GN=CJ030_MR7G011545 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.5e-43
Identity = 83/90 (92.22%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE K+DLMLV+GGWNSS+TSHLQEIAEERGIPSYW+DSEQR+GPGNRIAY
Sbjct: 350 QERQDAMYKLVEDKVDLMLVIGGWNSSNTSHLQEIAEERGIPSYWVDSEQRVGPGNRIAY 409

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLPKGPITIGVTSGASTP
Sbjct: 410 KLNHGELVEKENWLPKGPITIGVTSGASTP 439

[Close]
BLAST of CmoCh11G013250 vs. ExPASy TrEMBL
Match: A0A5A7SJM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00040 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.6e-43
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY
Sbjct: 351 QERQDAMYKLVEGKLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 410

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLPKG ITIGVTSGASTP
Sbjct: 411 KLNHGELVEKENWLPKGHITIGVTSGASTP 440

[Close]
BLAST of CmoCh11G013250 vs. NCBI nr
Match: XP_038888882.1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Benincasa hispida])

HSP 1 Score: 186.8 bits (473), Expect = 8.6e-44
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY
Sbjct: 349 QERQDAMYKLVEGKLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 408

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLPKGPITIGVTSGASTP
Sbjct: 409 KLNHGELVEKENWLPKGPITIGVTSGASTP 438

[Close]
BLAST of CmoCh11G013250 vs. NCBI nr
Match: XP_022136222.1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Momordica charantia])

HSP 1 Score: 186.8 bits (473), Expect = 8.6e-44
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY
Sbjct: 352 QERQDAMYKLVEGKLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 411

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLPKGPITIGVTSGASTP
Sbjct: 412 KLNHGELVEKENWLPKGPITIGVTSGASTP 441

[Close]
BLAST of CmoCh11G013250 vs. NCBI nr
Match: XP_010028563.2 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Eucalyptus grandis])

HSP 1 Score: 186.0 bits (471), Expect = 1.5e-43
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE KLDLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNR+AY
Sbjct: 355 QERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRVAY 414

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLPKGPITIGVTSGASTP
Sbjct: 415 KLNHGELVEKENWLPKGPITIGVTSGASTP 444

[Close]
BLAST of CmoCh11G013250 vs. NCBI nr
Match: XP_022952979.1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Cucurbita moschata] >KAG6572015.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011688.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE K+DLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY
Sbjct: 356 QERQDAMYKLVEGKVDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 415

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVEKENWLPKGPITIGVTSGASTP
Sbjct: 416 KLNHGELVEKENWLPKGPITIGVTSGASTP 445

[Close]
BLAST of CmoCh11G013250 vs. NCBI nr
Match: XP_022972347.1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Cucurbita maxima])

HSP 1 Score: 184.5 bits (467), Expect = 4.3e-43
Identity = 85/90 (94.44%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDAMYKLVE K+DLMLVVGGWNSS+TSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY
Sbjct: 356 QERQDAMYKLVEGKVDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 415

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KLNHGELVE+ENWLPKGPITIGVTSGASTP
Sbjct: 416 KLNHGELVERENWLPKGPITIGVTSGASTP 445

[Close]
BLAST of CmoCh11G013250 vs. TAIR 10
Match: AT4G34350.1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase )

HSP 1 Score: 168.3 bits (425), Expect = 2.9e-42
Identity = 77/90 (85.56%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 5   EERQDAMYKLVEAKLDLMLVVGGWNSSDTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAY 64
           +ERQDA+Y+LVE K+DLMLVVGGWNSS+TSHLQEI+E RGIPSYWIDSE+RIGPGN+IAY
Sbjct: 354 QERQDAIYELVEEKIDLMLVVGGWNSSNTSHLQEISEARGIPSYWIDSEKRIGPGNKIAY 413

Query: 65  KLNHGELVEKENWLPKGPITIGVTSGASTP 95
           KL++GELVEKEN+LPKGPITIGVTSGASTP
Sbjct: 414 KLHYGELVEKENFLPKGPITIGVTSGASTP 443

The following BLAST results are available for this feature:
BLAST of CmoCh11G013250 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6AVG61.4e-4185.564-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Oryza sativ... [more]
Q94B354.2e-4185.564-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Arabidopsis... [more]
B8HWD31.1e-3068.894-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC... [more]
Q31S643.6e-2965.564-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (s... [more]
Q5N2493.6e-2965.564-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ... [more]
BLAST of CmoCh11G013250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C4Z24.2e-4496.674-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Momordica c... [more]
A0A6J1GNC19.3e-4495.564-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Cucurbita m... [more]
A0A6J1I4K42.1e-4394.444-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Cucurbita m... [more]
A0A6A1V3D33.5e-4392.224-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Morella rub... [more]
A0A5A7SJM14.6e-4395.564-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cucumis melo var. makuwa O... [more]
BLAST of CmoCh11G013250 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038888882.18.6e-4496.674-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Benincasa his... [more]
XP_022136222.18.6e-4496.674-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Momordica cha... [more]
XP_010028563.21.5e-4395.564-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Eucalyptus gr... [more]
XP_022952979.11.9e-4395.564-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Cucurbita mos... [more]
XP_022972347.14.3e-4394.444-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Cucurbita max... [more]
BLAST of CmoCh11G013250 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G34350.12.9e-4285.564-hydroxy-3-methylbut-2-enyl diphosphate reductase [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0034514-hydroxy-3-methylbut-2-enyl diphosphate reductasePFAMPF02401LYTBcoord: 5..94
e-value: 3.1E-20
score: 72.6
NoneNo IPR availableGENE3D3.40.1010.20coord: 3..95
e-value: 4.8E-28
score: 99.0
NoneNo IPR availablePANTHERPTHR316194-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTICcoord: 5..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G013250.1CmoCh11G013250.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050992 dimethylallyl diphosphate biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
molecular_function GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0046872 metal ion binding