CmoCh11G013140 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G013140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr11: 9074267 .. 9074612 (-)
RNA-Seq ExpressionCmoCh11G013140
SyntenyCmoCh11G013140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCGAGTCTTTGTTGCGATTCTTGGAGGGAGATTGAGACTTTGTCGAGGACTCGGTTAGCTTCAAGGATTCTGCCTTGCATGACGAGCCAGCGTGGCGATTCGGGCATTGCTAGGACGATTATTACTAAAAAAGCGGAGGGGATTATGCCGATTCCGAGCATGAATCGCCAGCTCAAGTGAGTAGGGAGGTTGGAGAAGGCCAAATTGGAAACGTATCCTAACAATATCCCGAAATTAATGAAAACCTGTAAATGGAAAAAAAGGCAACATGTGTTCATTGTTAAGTCAGGGAAATTTGTCAGTACTATTTAATTAACTATTTTATTTAAGATTAAATTAA

mRNA sequence

ATGTCGGCGAGTCTTTGTTGCGATTCTTGGAGGGAGATTGAGACTTTGTCGAGGACTCGGTTAGCTTCAAGGATTCTGCCTTGCATGACGAGCCAGCGTGGCGATTCGGGCATTGCTAGGACGATTATTACTAAAAAAGCGGAGGGGATTATGCCGATTCCGAGCATGAATCGCCAGCTCAAATTAAATTAA

Coding sequence (CDS)

ATGTCGGCGAGTCTTTGTTGCGATTCTTGGAGGGAGATTGAGACTTTGTCGAGGACTCGGTTAGCTTCAAGGATTCTGCCTTGCATGACGAGCCAGCGTGGCGATTCGGGCATTGCTAGGACGATTATTACTAAAAAAGCGGAGGGGATTATGCCGATTCCGAGCATGAATCGCCAGCTCAAATTAAATTAA

Protein sequence

MSASLCCDSWREIETLSRTRLASRILPCMTSQRGDSGIARTIITKKAEGIMPIPSMNRQLKLN
Homology
BLAST of CmoCh11G013140 vs. ExPASy TrEMBL
Match: A0A124SCB1 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_004710 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-06
Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 1   MSASLCCDSWREIETLSRTRLASRILPCMTSQRGDSGIARTIITKKAEGIMPIPSMNRQL 60
           MSAS   DS +E E LS T LAS   PC+TSQRGDSG+  T   +  EG  PIP++NR  
Sbjct: 118 MSASRSLDSSKESEVLSSTILASPSRPCVTSQRGDSGMPSTPKARNIEGTAPIPNINRHP 177

Query: 61  KLN 64
            +N
Sbjct: 178 NIN 180

BLAST of CmoCh11G013140 vs. ExPASy TrEMBL
Match: A0A7C8ZQU0 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-06
Identity = 35/61 (57.38%), Postives = 38/61 (62.30%), Query Frame = 0

Query: 1   MSASLCCDSWREIETLSRTRLASRILPCMTSQRGDSGIARTIITKKAEGIMPIPSMNRQL 60
           MS SL   S  E E    T  AS   PC+TS RGDSGIART   +K  GI PIPSMNRQL
Sbjct: 49  MSLSLSAASSGESEIRLSTFFASPSRPCITSHRGDSGIARTPTARKMLGIAPIPSMNRQL 108

Query: 61  K 62
           +
Sbjct: 109 R 109

BLAST of CmoCh11G013140 vs. ExPASy TrEMBL
Match: A0A7C9CR72 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.3e-05
Identity = 33/61 (54.10%), Postives = 37/61 (60.66%), Query Frame = 0

Query: 1  MSASLCCDSWREIETLSRTRLASRILPCMTSQRGDSGIARTIITKKAEGIMPIPSMNRQL 60
          MS S    S  E E   RT  AS   PC+TSQRGDSG+ART   +   G  PIPSMNRQL
Sbjct: 1  MSLSRDWASSAESEVRVRTFFASPSRPCITSQRGDSGMARTPTARTTLGTAPIPSMNRQL 60

Query: 61 K 62
          +
Sbjct: 61 R 61

BLAST of CmoCh11G013140 vs. ExPASy TrEMBL
Match: A0A0A9KK97 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.2e-04
Identity = 31/61 (50.82%), Postives = 36/61 (59.02%), Query Frame = 0

Query: 1   MSASLCCDSWREIETLSRTRLASRILPCMTSQRGDSGIARTIITKKAEGIMPIPSMNRQL 60
           MS S    S  E E L RTR AS + P MTS RGDSG+ART   +K  G  P  +M RQL
Sbjct: 57  MSRSRSSASAGESEVLRRTRRASSMRPRMTSHRGDSGMARTATPRKTGGTAPTRNMARQL 116

Query: 61  K 62
           +
Sbjct: 117 R 117

BLAST of CmoCh11G013140 vs. NCBI nr
Match: KAF5778449.1 (hypothetical protein HanXRQr2_Chr12g0547591 [Helianthus annuus])

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-06
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 0

Query: 1   MSASLCCDSWREIETLSRTRLASRILPCMTSQRGDSGIARTIITKKAEGIMPIPSMNRQL 60
           MSA+   DS +  E LSRT LAS   PCMTS RGDSG+ RT   +  +GI P PS+NRQ 
Sbjct: 42  MSANRSLDSSKLSEVLSRTFLASPSRPCMTSHRGDSGMPRTPNARNIDGIAPTPSINRQP 101

Query: 61  K 62
           K
Sbjct: 102 K 102

BLAST of CmoCh11G013140 vs. NCBI nr
Match: KVH93235.1 (hypothetical protein Ccrd_004710 [Cynara cardunculus var. scolymus])

HSP 1 Score: 60.8 bits (146), Expect = 4.7e-06
Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 1   MSASLCCDSWREIETLSRTRLASRILPCMTSQRGDSGIARTIITKKAEGIMPIPSMNRQL 60
           MSAS   DS +E E LS T LAS   PC+TSQRGDSG+  T   +  EG  PIP++NR  
Sbjct: 118 MSASRSLDSSKESEVLSSTILASPSRPCVTSQRGDSGMPSTPKARNIEGTAPIPNINRHP 177

Query: 61  KLN 64
            +N
Sbjct: 178 NIN 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A124SCB12.3e-0652.38Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_004... [more]
A0A7C8ZQU02.3e-0657.38Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A7C9CR723.3e-0554.10Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A0A9KK976.2e-0450.82Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAF5778449.12.1e-0655.74hypothetical protein HanXRQr2_Chr12g0547591 [Helianthus annuus][more]
KVH93235.14.7e-0652.38hypothetical protein Ccrd_004710 [Cynara cardunculus var. scolymus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G013140.1CmoCh11G013140.1mRNA