CmoCh11G013040 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G013040
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L39
LocationCmo_Chr11: 8922862 .. 8924723 (-)
RNA-Seq ExpressionCmoCh11G013040
SyntenyCmoCh11G013040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCCAAACTCGACAAATTCTCCTAAAACCCTAATCCATGGTCTTTCCCGACTAGAACGGCCGCTTCTTCACTTTGCTCTCGCAGGTAATCTTTCTTCATTTCTCCTCCGTCATCGAATATCTGTTCTTCTTCCTCGGTATATCTTTGATCTCTTGTAATTTAAATTAGTTGATTTTCAAATTTTCATATTTTTGGGTTTTTTTTTTGTCAACTGAACAACGCTGAAGTCCGGGAATTATTTTCTTAAGGTTCCTCAGATAATTAGTCGTTAGGTTTGAGATCGTTTGGCTTGCTATTTCGATACATTTTTGTAGATCTGCGAGTTCCATGCCTTGTAACTATTAGTTTAGTGAGAACATGGGGTTTCTTCCTTATAAATAGTAGGTTTTGATTGTTTAGATTTCGATTTAATCGACCTCCAGGAACCAATATGCTATATAGCATTTGTGCGCTGCGCTTGCTAGAATATTTTTTAAGGCGTTTTAGAATCAGAATTTACTTTTCAAGCCGAGGGACCAATTTGTTGTTATTTTTGTGTATTATTCTTATGTGTGGAATGAATGTAATGGTTCTGTGAATAGAATAAAGCGAAGTAGTTCGAGTGGATGAATCCTTAACTTTTTGTAGTGGAAGTACCGGTCTAAATTTATTGCAATGATTGATAATTTCCGATATCTATCTATTTTTTTCTCCATTATTTGTGTTTTTATATCTAAAATTTTGGCACACGGATGAGAAATTTAGCTATCGTACGTTCGTTTGAATATCATAGATGTGGTGAATACTTGAGAGTCCCACGCAATGAATTTCCCTTTTATTCAGTTTAAATTCCAATGTTGAATTAAATTCTCTTTAATTTTGTTCGTTTGGATTATGGGTTGATAATGGTTCTTCATGGGTCAGGTAATTAGTTGTAGGGGTGCAGTCGTTGGCTGATTCTTGAATATCCAAGATGGTAAGTGTTTCTTACTTGGGAAGTGATTTTTTATTTTTAATTTCTTCTGGTAATTTGTTTAGTTACCCAGATTGATTTCGATTTGGGAGGTTGTGTTTTGTGATGCGAGTTTCCTTTAATGTGCACAGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCCATTCCTCACTGGATCCGCTTGAGGACCGACAATACCATCAGGTCTTAATCTCTTCTATTTTAGTTTTCATTCGTAATTTCATCATTTCTATTCTTATCAGTTTTAAATGTAACACCGCATTTTGATGTGTTCTTCAGGTATAATGCGAAACGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTGAGGTGTTCCTCTTGTGATTTGCTCTTCATCCTGTTTTGAACCTATTTAAGTGTTATGATGTTAGTTGTGGAGAAGACGAAGGATAGATGTTTGAATCTTTTTGCGTCTCAATTTAAGAACTTATGGAATAGAAAATCATGTAGTCTTTAGGCTGGCATCTATCTATGTTCAATCTATATCTGGAGTAATTTCAATTCTTAAGATAAATCTCGTGTTCATTTTGTTTAATTTCTATCACAGTTCATTTCTGGTACCCCAGTTTGGAATTTTATTCTGATCTTAATTGCTCAAATATTCATGTGGATGAGCTGAGCTGAGCTGAGATGAGCTGGGTGTCTACATTTCTGTTGCTTTACAAATTGTTCTTCCGATTCATGTATTTTTCTTAGTAAAGCTATTTGTAAGTGTTTTCTAAAACTATGTAATTGGTGTTAATTTTTGTAACTGTCGTAAATTTTGTTTTAAATAGGGTTTTGTTAAAACTATTTGTAATTTGTATGGTGAAAATTAATATATAAATTCCTACAAAAT

mRNA sequence

GCCCAAACTCGACAAATTCTCCTAAAACCCTAATCCATGGTCTTTCCCGACTAGAACGGCCGCTTCTTCACTTTGCTCTCGCAGGTAATTAGTTGTAGGGGTGCAGTCGTTGGCTGATTCTTGAATATCCAAGATGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCCATTCCTCACTGGATCCGCTTGAGGACCGACAATACCATCAGTTTTAAATGTATAATGCGAAACGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTGAGTTCATTTCTGGTACCCCAGTTTGGAATTTTATTCTGATCTTAATTGCTCAAATATTCATGTGGATGAGCTGAGCTGAGCTGAGATGAGCTGGGTGTCTACATTTCTGTTGCTTTACAAATTGTTCTTCCGATTCATGTATTTTTCTTAGTAAAGCTATTTGTAAGTGTTTTCTAAAACTATGTAATTGGTGTTAATTTTTGTAACTGTCGTAAATTTTGTTTTAAATAGGGTTTTGTTAAAACTATTTGTAATTTGTATGGTGAAAATTAATATATAAATTCCTACAAAAT

Coding sequence (CDS)

ATGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCCATTCCTCACTGGATCCGCTTGAGGACCGACAATACCATCAGTTTTAAATGTATAATGCGAAACGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTGAGTTCATTTCTGGTACCCCAGTTTGGAATTTTATTCTGATCTTAATTGCTCAAATATTCATGTGGATGAGCTGA

Protein sequence

MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRNEGTGAAPSLDFEFISGTPVWNFILILIAQIFMWMS
Homology
BLAST of CmoCh11G013040 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-13
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 0

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN 44
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTI +    R+
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRH 43

BLAST of CmoCh11G013040 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-13
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 0

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN 44
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTI +    R+
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRH 43

BLAST of CmoCh11G013040 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-13
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 0

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN 44
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTI +    R+
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRH 43

BLAST of CmoCh11G013040 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-12
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 0

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN 44
          MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTI +    R+
Sbjct: 1  MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRH 43

BLAST of CmoCh11G013040 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-12
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN 44
          MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTI +    R+
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRH 43

BLAST of CmoCh11G013040 vs. ExPASy TrEMBL
Match: A0A5N5J8N4 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_027771 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.3e-14
Identity = 43/61 (70.49%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIS------FKCIMRNEGTGAAPSLDF 56
          MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTI       F+C   + GTG   SLD 
Sbjct: 35 MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRSFSLSLFRCTTPSAGTGEGLSLDS 94

BLAST of CmoCh11G013040 vs. ExPASy TrEMBL
Match: A0A6N2K479 (Aspartate transaminase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS18639 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 42/55 (76.36%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRNEGTGAAPSLDFE 56
          MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIS        GTG   SLD E
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIS-------AGTGEELSLDSE 48

BLAST of CmoCh11G013040 vs. ExPASy TrEMBL
Match: A0A6J5W488 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS8027 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.0e-12
Identity = 43/75 (57.33%), Postives = 46/75 (61.33%), Query Frame = 0

Query: 1   MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRNE------------GTGA 60
           MPSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTI       +             GTGA
Sbjct: 58  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRLDAYKLSNLFMYVSGTTPSAGTGA 117

Query: 61  APSLDFEFISGTPVW 64
           APS   E +    +W
Sbjct: 118 APSSVSEVLCSNVIW 132

BLAST of CmoCh11G013040 vs. ExPASy TrEMBL
Match: A0A6J5TP45 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS8030 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.0e-12
Identity = 43/75 (57.33%), Postives = 46/75 (61.33%), Query Frame = 0

Query: 1   MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRNE------------GTGA 60
           MPSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTI       +             GTGA
Sbjct: 58  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRLDAYKLSNLFMYVSGTTPSAGTGA 117

Query: 61  APSLDFEFISGTPVW 64
           APS   E +    +W
Sbjct: 118 APSSVSEVLCSNVIW 132

BLAST of CmoCh11G013040 vs. ExPASy TrEMBL
Match: A0A1L6K4G8 (Uncharacterized protein OS=Populus tomentosa OX=118781 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.5e-12
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISF----KCIMRN 44
          MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTISF     CI R+
Sbjct: 40 MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTISFLKVHSCIHRS 86

BLAST of CmoCh11G013040 vs. NCBI nr
Match: KAB5513865.1 (hypothetical protein DKX38_027771 [Salix brachista])

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 43/61 (70.49%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIS------FKCIMRNEGTGAAPSLDF 56
          MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTI       F+C   + GTG   SLD 
Sbjct: 35 MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRSFSLSLFRCTTPSAGTGEGLSLDS 94

BLAST of CmoCh11G013040 vs. NCBI nr
Match: XP_024459103.1 (uncharacterized protein LOC7479545 isoform X5 [Populus trichocarpa])

HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISF----KCIMRNEGTG 48
          MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTISF     CI R+   G
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTISFLKIHLCIQRSSCLG 51

BLAST of CmoCh11G013040 vs. NCBI nr
Match: XP_024459101.1 (uncharacterized protein LOC7479545 isoform X3 [Populus trichocarpa])

HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISF----KCIMRNEGTG 48
          MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTISF     CI R+   G
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTISFLKIHLCIQRSSCLG 51

BLAST of CmoCh11G013040 vs. NCBI nr
Match: XP_024459100.1 (uncharacterized protein LOC7479545 isoform X2 [Populus trichocarpa])

HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISF----KCIMRNEGTG 48
          MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTISF     CI R+   G
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTISFLKIHLCIQRSSCLG 51

BLAST of CmoCh11G013040 vs. NCBI nr
Match: XP_024459099.1 (uncharacterized protein LOC7479545 isoform X1 [Populus trichocarpa])

HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISF----KCIMRNEGTG 48
          MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTISF     CI R+   G
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTISFLKIHLCIQRSSCLG 51

BLAST of CmoCh11G013040 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-13
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN 44
          MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTI +    R+
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRH 43

BLAST of CmoCh11G013040 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 67.8 bits (164), Expect = 4.5e-12
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 0

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN 44
          MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN I +    R+
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRH 43

BLAST of CmoCh11G013040 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 9  IKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRN 44
          IKKKL KKMRQNRPIPHWIRLRTDNTI +    R+
Sbjct: 2  IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRH 36

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q6KAJ83.9e-1379.0760S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P... [more]
P514263.9e-1379.0760S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P... [more]
P514253.9e-1379.0760S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1[more]
Q5SMI41.1e-1276.7460S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P... [more]
P514241.9e-1276.7460S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2[more]
Match NameE-valueIdentityDescription
A0A5N5J8N46.3e-1470.49Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_027771 PE=3 SV=1[more]
A0A6N2K4791.5e-1276.36Aspartate transaminase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS18639 PE=3 SV=1[more]
A0A6J5W4882.0e-1257.33Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS8027 PE=3... [more]
A0A6J5TP452.0e-1257.33Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS8030 PE=3 SV... [more]
A0A1L6K4G83.5e-1282.98Uncharacterized protein OS=Populus tomentosa OX=118781 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
KAB5513865.11.3e-1370.49hypothetical protein DKX38_027771 [Salix brachista][more]
XP_024459103.13.2e-1278.43uncharacterized protein LOC7479545 isoform X5 [Populus trichocarpa][more]
XP_024459101.13.2e-1278.43uncharacterized protein LOC7479545 isoform X3 [Populus trichocarpa][more]
XP_024459100.13.2e-1278.43uncharacterized protein LOC7479545 isoform X2 [Populus trichocarpa][more]
XP_024459099.13.2e-1278.43uncharacterized protein LOC7479545 isoform X1 [Populus trichocarpa][more]
Match NameE-valueIdentityDescription
AT4G31985.11.4e-1376.74Ribosomal protein L39 family protein [more]
AT3G02190.14.5e-1272.09Ribosomal protein L39 family protein [more]
AT2G25210.11.2e-0977.14Ribosomal protein L39 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 9..42
e-value: 1.1E-11
score: 44.2
IPR023626Ribosomal protein L39e domain superfamilyGENE3D1.10.1620.10Ribosomal protein L39ecoord: 1..44
e-value: 1.1E-18
score: 68.9
IPR023626Ribosomal protein L39e domain superfamilySUPERFAMILY48662Ribosomal protein L39ecoord: 3..43
NoneNo IPR availablePANTHERPTHR19970:SF2460S RIBOSOMAL PROTEIN L39-2coord: 1..42
NoneNo IPR availablePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G013040.1CmoCh11G013040.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome