CmoCh11G013040 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCCCAAACTCGACAAATTCTCCTAAAACCCTAATCCATGGTCTTTCCCGACTAGAACGGCCGCTTCTTCACTTTGCTCTCGCAGGTAATCTTTCTTCATTTCTCCTCCGTCATCGAATATCTGTTCTTCTTCCTCGGTATATCTTTGATCTCTTGTAATTTAAATTAGTTGATTTTCAAATTTTCATATTTTTGGGTTTTTTTTTTGTCAACTGAACAACGCTGAAGTCCGGGAATTATTTTCTTAAGGTTCCTCAGATAATTAGTCGTTAGGTTTGAGATCGTTTGGCTTGCTATTTCGATACATTTTTGTAGATCTGCGAGTTCCATGCCTTGTAACTATTAGTTTAGTGAGAACATGGGGTTTCTTCCTTATAAATAGTAGGTTTTGATTGTTTAGATTTCGATTTAATCGACCTCCAGGAACCAATATGCTATATAGCATTTGTGCGCTGCGCTTGCTAGAATATTTTTTAAGGCGTTTTAGAATCAGAATTTACTTTTCAAGCCGAGGGACCAATTTGTTGTTATTTTTGTGTATTATTCTTATGTGTGGAATGAATGTAATGGTTCTGTGAATAGAATAAAGCGAAGTAGTTCGAGTGGATGAATCCTTAACTTTTTGTAGTGGAAGTACCGGTCTAAATTTATTGCAATGATTGATAATTTCCGATATCTATCTATTTTTTTCTCCATTATTTGTGTTTTTATATCTAAAATTTTGGCACACGGATGAGAAATTTAGCTATCGTACGTTCGTTTGAATATCATAGATGTGGTGAATACTTGAGAGTCCCACGCAATGAATTTCCCTTTTATTCAGTTTAAATTCCAATGTTGAATTAAATTCTCTTTAATTTTGTTCGTTTGGATTATGGGTTGATAATGGTTCTTCATGGGTCAGGTAATTAGTTGTAGGGGTGCAGTCGTTGGCTGATTCTTGAATATCCAAGATGGTAAGTGTTTCTTACTTGGGAAGTGATTTTTTATTTTTAATTTCTTCTGGTAATTTGTTTAGTTACCCAGATTGATTTCGATTTGGGAGGTTGTGTTTTGTGATGCGAGTTTCCTTTAATGTGCACAGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCCATTCCTCACTGGATCCGCTTGAGGACCGACAATACCATCAGGTCTTAATCTCTTCTATTTTAGTTTTCATTCGTAATTTCATCATTTCTATTCTTATCAGTTTTAAATGTAACACCGCATTTTGATGTGTTCTTCAGGTATAATGCGAAACGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTGAGGTGTTCCTCTTGTGATTTGCTCTTCATCCTGTTTTGAACCTATTTAAGTGTTATGATGTTAGTTGTGGAGAAGACGAAGGATAGATGTTTGAATCTTTTTGCGTCTCAATTTAAGAACTTATGGAATAGAAAATCATGTAGTCTTTAGGCTGGCATCTATCTATGTTCAATCTATATCTGGAGTAATTTCAATTCTTAAGATAAATCTCGTGTTCATTTTGTTTAATTTCTATCACAGTTCATTTCTGGTACCCCAGTTTGGAATTTTATTCTGATCTTAATTGCTCAAATATTCATGTGGATGAGCTGAGCTGAGCTGAGATGAGCTGGGTGTCTACATTTCTGTTGCTTTACAAATTGTTCTTCCGATTCATGTATTTTTCTTAGTAAAGCTATTTGTAAGTGTTTTCTAAAACTATGTAATTGGTGTTAATTTTTGTAACTGTCGTAAATTTTGTTTTAAATAGGGTTTTGTTAAAACTATTTGTAATTTGTATGGTGAAAATTAATATATAAATTCCTACAAAAT GCCCAAACTCGACAAATTCTCCTAAAACCCTAATCCATGGTCTTTCCCGACTAGAACGGCCGCTTCTTCACTTTGCTCTCGCAGGTAATTAGTTGTAGGGGTGCAGTCGTTGGCTGATTCTTGAATATCCAAGATGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCCATTCCTCACTGGATCCGCTTGAGGACCGACAATACCATCAGTTTTAAATGTATAATGCGAAACGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTGAGTTCATTTCTGGTACCCCAGTTTGGAATTTTATTCTGATCTTAATTGCTCAAATATTCATGTGGATGAGCTGAGCTGAGCTGAGATGAGCTGGGTGTCTACATTTCTGTTGCTTTACAAATTGTTCTTCCGATTCATGTATTTTTCTTAGTAAAGCTATTTGTAAGTGTTTTCTAAAACTATGTAATTGGTGTTAATTTTTGTAACTGTCGTAAATTTTGTTTTAAATAGGGTTTTGTTAAAACTATTTGTAATTTGTATGGTGAAAATTAATATATAAATTCCTACAAAAT ATGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCCATTCCTCACTGGATCCGCTTGAGGACCGACAATACCATCAGTTTTAAATGTATAATGCGAAACGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTGAGTTCATTTCTGGTACCCCAGTTTGGAATTTTATTCTGATCTTAATTGCTCAAATATTCATGTGGATGAGCTGA MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTISFKCIMRNEGTGAAPSLDFEFISGTPVWNFILILIAQIFMWMS Homology
BLAST of CmoCh11G013040 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2) HSP 1 Score: 75.1 bits (183), Expect = 3.9e-13 Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 0
BLAST of CmoCh11G013040 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2) HSP 1 Score: 75.1 bits (183), Expect = 3.9e-13 Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 0
BLAST of CmoCh11G013040 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 3.9e-13 Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 0
BLAST of CmoCh11G013040 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 1.1e-12 Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 0
BLAST of CmoCh11G013040 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2) HSP 1 Score: 72.8 bits (177), Expect = 1.9e-12 Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0
BLAST of CmoCh11G013040 vs. ExPASy TrEMBL
Match: A0A5N5J8N4 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_027771 PE=3 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 6.3e-14 Identity = 43/61 (70.49%), Postives = 46/61 (75.41%), Query Frame = 0
BLAST of CmoCh11G013040 vs. ExPASy TrEMBL
Match: A0A6N2K479 (Aspartate transaminase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS18639 PE=3 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12 Identity = 42/55 (76.36%), Postives = 43/55 (78.18%), Query Frame = 0
BLAST of CmoCh11G013040 vs. ExPASy TrEMBL
Match: A0A6J5W488 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS8027 PE=3 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 2.0e-12 Identity = 43/75 (57.33%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of CmoCh11G013040 vs. ExPASy TrEMBL
Match: A0A6J5TP45 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS8030 PE=3 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 2.0e-12 Identity = 43/75 (57.33%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of CmoCh11G013040 vs. ExPASy TrEMBL
Match: A0A1L6K4G8 (Uncharacterized protein OS=Populus tomentosa OX=118781 PE=2 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 3.5e-12 Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0
BLAST of CmoCh11G013040 vs. NCBI nr
Match: KAB5513865.1 (hypothetical protein DKX38_027771 [Salix brachista]) HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13 Identity = 43/61 (70.49%), Postives = 46/61 (75.41%), Query Frame = 0
BLAST of CmoCh11G013040 vs. NCBI nr
Match: XP_024459103.1 (uncharacterized protein LOC7479545 isoform X5 [Populus trichocarpa]) HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12 Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 0
BLAST of CmoCh11G013040 vs. NCBI nr
Match: XP_024459101.1 (uncharacterized protein LOC7479545 isoform X3 [Populus trichocarpa]) HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12 Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 0
BLAST of CmoCh11G013040 vs. NCBI nr
Match: XP_024459100.1 (uncharacterized protein LOC7479545 isoform X2 [Populus trichocarpa]) HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12 Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 0
BLAST of CmoCh11G013040 vs. NCBI nr
Match: XP_024459099.1 (uncharacterized protein LOC7479545 isoform X1 [Populus trichocarpa]) HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12 Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 0
BLAST of CmoCh11G013040 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein ) HSP 1 Score: 72.8 bits (177), Expect = 1.4e-13 Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0
BLAST of CmoCh11G013040 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein ) HSP 1 Score: 67.8 bits (164), Expect = 4.5e-12 Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 0
BLAST of CmoCh11G013040 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein ) HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09 Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|