CmoCh11G012340 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G012340
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase
Location	Cmo_Chr11: 7597224 .. 7604276 (+)
RNA-Seq Expression	CmoCh11G012340
Synteny	CmoCh11G012340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTTGTTGTACAAGCAGGGTTCGAATTAGAACCCTTATTGCATGAAATGTCTGTAAGCACCCCTGCGGGGGTAGACTTAGTATCTAGGGATAGAGTAAAGGATGGCCAAGTAATCATAGGGAACCAAACTTTAAGCATTGACCTGATGGTGGTAAACATGACAGATTTTGACGCCATACTAGGCATGGATTGGTTAGCTGAAAATCGAGCTAGTATAGACTGCCGCAAAAAGGAAGTAAAATTTTCACCATCGACAGGACCTACCTTTAAATTTAAAGGCACAAATATCGGGATTACCCCCAAGGTAGTCTCGATGATGAAAGCAAAAAGGTTAGTCCAACAAGGTGGATGGGCTATATTAGCATGTGTTGTAGACGTAAGAGGAAAGGAAAAGACCCTAGTAAATGTGCCAATAGTAAACGAGTTCCCGAATGTATTTCCGGATGACTTATCTGGAATATCCCCTTCCCGAGCGGTCGACTTTGTCATCGAACTCGAGCCGAGAACTGGGCCTATTTCCAAAGCACCCTATCGCATGGCGCCAGCAGAGTTGAAAGAACTTAAGGCGCAATTGCAAGACTTACTAGATAAAGGATTCATTCAACCTAGCGTGTCCCCCTGGGGTGCGCCAGTGTTGTTTGTTAAGAAGAAAGATGGATCGATGCGTCTGTGCATCGATTATAGAGAGCTAAACAAGAGAACCGTAAAAAATAAATATCCTCTACCTAGAATAGAAGACTTGTTTGATCAACTCAGAGAGGCAACAATATTCTCTAAGATAGATCTTCGGTCCGGTTACCACCAAATTAGGATTAATGAAAAAGACGTACCAAAAACAGCGTTTAGGACAAGGTACGGTCACTACGAGTTTGTAGTGATGTCATTTGGCCTCACTAATGCCCCAACTGTGTTTATGGAGTTAATGAACCGGGTATTCAAAGAATGCCTAGACATGTTCGTGATTGTGTTCATTGACGACATCCTCATATACTCGAGAACTGACCTAGAGCACGAGGAACACCTCCGAAAAGTCCTTACCACCCTAAGAGAGCACAAGTTGTACGCCAAGTTCTCCAAATGCGAATTTTGGTTACGACAAGTCTCTTTCCTAGGACACATGGTGTCAAAGGACGAAATATCTGTAGATCCCACCAAGGTCGAAGCGATCACAAAGTGGGAACGCCCAACTACGGTAACGGAAGTAAGGAGTTTCCTAGGATTGGCGGGATATTATCGAAGGTTCATGCAGGACTTCGCTAAAATATCCTCGCCTTTAAAAAAGTTAACAAAAAAAAGGGGTGCCATTTAGATGGGATGATGCTTGTGAGGCAAGCTTCCAGAACCTAAAAGAGAGATTGGTAACCACCCCGGTACTCATAGTACTCGAGAGCTCAGAAGGATATGAGATCTATAGTGATGCCTCCATGAAAGGACTGGGATGTGTGTTAATGCAACACGGCAAGGTTGTCGCATACGCATCTCGTCAACTTAAAGAATATGAAAAGAACTACCCTACCCATGACCTAGAGTTGGCCGCTGTAGTGTTCGCGCTGAAAATCTGGCGACATTACCTGTATGGCGAAAAAACCCAAATTTTTACCGACCACAAAAGTTTGAAATACTTCTTCACCCAGAAAGAGTTAAACATGAGGCAGAGAAGGTGGTTAGAATTGGTGAAGGATTATGACGTAGATATCCAGTACCACCTTGGGAAAGCAAATGTGGTTGCAGATGCCTTGAGTAGGAAGACGGTCCACTCGTCGGCCCTCATTACGAGGGAAGTAAGGGTACAAAGGGAGTTCGAGCGAGCCAACATAGCTGTAGCGACCGAGGGAGTCGTAGCACAGCTGGCCCGACTCACGGTACAACCTACGCTTAGGCAGAGAATTATTACCTCCCAACGAGAGGATCCTAACCTACAGAAAGTCCTAGGACAGCTAGACGAAAGTCCAGTAGATGGATTCTCGAAGTCATCAGATGAAGGACTATTGTATCAGGGACGCTTATGTGTTCCGGCAATAGAAGATTTAAGGAAGGAAATACTGATGGAAGCTCACAACTCACCATTTTTCATGCATCCAAGAGGTACTAAGATGTACCAAGATTTAAAACAACACTTTTGGTGGAAGAGCATGAAGAGAGATGTGGCCGGGTTTGTGAGCAAGTGCTTAGTTTGTCAACAAGTGAAAGCTCCAAGACAAAAGGCGGCGGGGTTGTTGCAGCCCCTAAGCATACCGGAGTGGAAGTGGGAAAACATAGCGATGGACTTCATAGTAGGTTTACCCAAAACGCCCAAAGGCTACACAGTGATCTGGGTAGTTGTCGATAGGTTGACCAAGTCGGCACACTTCCTACCCGGGAAGGTCACATATACAGTTGACAATTGGGCACAACTGTATGTGAAAGAAATAGTAAGACTACACGGAGTCCCAGTGTCTATAGTGTCGGATCGGGATCCCCGCTTTACGTCAGCGTTTTGGCGTGGACTTCAAAAAGCACTGGGTACCCGCCTCGACTTTAGTACCGCCTTTCACCCCCAAACAGATGGACAAACGGAGCGTTTAAACCAAATTCTAGAGGACATGCTACGCGCTTGCGTACTAGATTTTAAGGAAAGTTGGGATTCCAAACTCCACCTGATGGAATTCTCGTATAACAATAGTTTCCAAGCAACTATTGGAATGGCACCGTTTGAGGCCCTGTACGGAAAACGGTGTAGGTCCCCACTACGTTGGGACAAGGTAGGAGAGAGAGAATTAGTAGGACCCGAGTTGGTTCGACTCACCAATGAGGCTGTCCAGAAAATTCGAGCGAGGATGCGTACCGCTCAAAGTAGACAGAAAAGCTACGCCGATGTAAGGCGTAAAAGCCTGGAGTTTGAGGTGGGGGACCCAGTATTCCTCAAGGTGGCACCTATGAAAGGTGTGTTAAGATTTGGGCATAAGGGCAAGTTAAGTCCTAAATTCATTGGACCATTTGAGATCCTAGAGCGAGTTGGTCTAGTAGTGTATAAGTTAGCCTTACCTCCAGCTCTCTCAGGAGTACATGATGTATTTCACGTGTCGATGCTGAGGAAGTACATCACGGATCCTATCCACGTTATAGACTACAAACCACTCCAGCTCAATGAAGATCTGAGCTACGAGGAAAAACCAGTAAGAATCTTAGCTAGAGAAGTAAAAACCTTACGCAACAGGAGCATTGCGTTCGTTAAGGTACTGTGGCGGAATCACCACAGTGAGGAAGCCACGTGGGAGCGTGAGGACGAAATAAGAGAGAAATACCCCGAGTTGGTACAAGAGTTTGAGACTTTCGAGGACGAAAGTTCTTTTTAGGGGTAGATAATGTAACGACCCGGGAAAGAAAGAAAAAAAAAATATATATATATATATACATATAATAACAATAAATAAATAAAATAATAAAATAAAGTAAAAAAAACAAAAAAAACTCAGTCGCCGGAAAACCCGCGAGTTTTCCGGCGACCGCCAAGTTTCGTGGAACCCACACGAAACGACGGCCACAGCACGCCACCCTCAGCCCACGACACCCAGCATCTTCAGAACACTTGCAAAGGGAGAAAAGAGAGAAAATTTTGAGAGAGAGAGAGAGATTTCGGACAAACGTCGGCGAGTGTCCAGTTTCTCCGACGAACCCTCAAACCACCCTCAAACCGACACCAAACGATCTGTTACCACCATAAGAGGGATCCCTAACGAAAGCACAATATCTCAGGGTGCGTTTTGTGTCATTTTGTAAGCGTCGTCGTCGGTAACCGAGGTTAGAAAATTAGGTTTCTTAATCGATTCTTAGATCTGTGGCTTTTAGGAGCTTTTAGGCCGCAAAACTCCCAGAAAGAAAAGGACGAAGAACAAAGAGGAAAAGGGAAGGAAGAGGACCGAAATTGGCAACGAAAACGCCGCGGGAAGGAGAGAGAAAGCTCGCCGGAAAATCGGCCAAAGTCGGGTAAGGAAGACGAGATCCACGGATCCGGGTCAACCCGAACCCAGAACCCGGGAGAGCCAGCCCGTTCCTCCCTTGGCCTCTGCCTTTGGCCCAGCCCAACTACAGCAGCCCAAACCTCAAACCGGCCCAGAAGCTAAGGTTCAGTTGAACCAACCCAGACTAGACCCACGGTCCAATTGAGCCGGCCTGCAAACCAAACTCCTGCGGTCCAGCCCAGTAAGCCGAGACCCAACGATTAGTCTTGGCCTAATAGCCTTCCACAGCCCACGACCCGAACCACGACCTGAATCGGACTGCGACCTGCGCTTCGACCCGACACTGCCGCCCGACATGGCTTTCTCTGCTACTGCCACGTGTCACACAGCGGCGCAGGCAGTCCCTCAGCTCGGCTCGGCGCAAATGGCTCGGGCTCCCTCCAACGATGCTCCGGCGGCGTTCGGCTCGGCTCACCTATTTTCAGCTCGATTTCCACTGTTCCGACCCTCCCAAATCTGTTTTCGGCCCCGATTAAGGTATCTGATGCCGTTTCAGAGCCGTATTTCACATTTATTAAATTATAGGTAAATTAATTGTGAAATACTAACGAAATATGGTGGACGGTGTGATAGGAAACAAACCCCGGGGACGTAGGGAGCAGCTCTCACGGAACGGGAGCTTACGTTTAGCGATTTAGGGAGTACTTCGGCCAAGGTCAACCAAGTAAGTGGCCTTACTATAGGATAGGCTAAATAAATTGTATGATGCTTGATGTTATGTGCCAGTTTATACATATTTTGTTGAGTGACGCTTGATATGTTTGACGCACGTTGTGGCTTTATGATGAGCATGATGATTGCATGATTTTTACCTTAATATGATGATGTTTTCCATATTGAGCATGCTAGATGATGATGAGTGTCATATTGCATCATGTCGTTAGATCGACATAGGACACAACCCTAAGAGCATGAAAATGATAGTAATATAAATATCCAGGAGTATGCGTTACCTAGAGTAACAAAGAGATGAGACTAGAGGGTTGTGTCAGAAGAGACATTACGATGGATTTAGAGGGACCTCATGCATTTTGTATGTTCATAAGCATAGGGCTACTTCCCCTAGAGATGATGAGTGCGGACGCGCACCTTACGATGAGCGCGAATGCGCACAAGTGCAAAAGCACACAGATGAGAGTGTTCATGAGGCGCATGACACTATGGGGTTCCGCTGACCTCCGGACGTCGCTACAGATTAGCTTGACCAGAGGGTCCAGGGGGTGTGCGAGCACCCTGGGGACTCACATTCACACGTGTGAGTCGTGTGTAGGGAAGTACTACACATCCAATTTGTCCGAGATTGGAGGCCACCCCTAAGATGATTAGAGATAGGTCCCTATTCATGATTGCATGTGTTTGCATTAGCATGGCCCCTATAGTGGGGTCACTTACTGAGTATTTCTTCGGCCGTGTGCCATATTATTTTTTTTTTTTCAGGTAAAGGCAAGGCGCCCATGTACGGTTGACGGTGGCATCGTGATCAGAGACTGTGGCGCGTGCATAGGATAGTTGCATATTTAATTCCTAGTCTTGGTTAGGATAGGGCGTTTGCATTTCATTCATTTATATTAATTAATTTGTAATCGTTTTATTTTATCTTTTTGAACTCCAGCACAATGTTTGAAACACGTAAGTCCGGTAGTGTTTTTCAATGTTTTAATGTATTCTGAAGTTTTAAATTTTTCCGCTAATAAAGATGAGCATGCTTAGATTTTTATTCTGCATTAGAGATGAGCATGAGACGTTAGTGGCGACTCTAGATATGTGGAAATTTAGGGTCGTTACAGTTGGTATCAGAGCTCTAGGNNNNNNNNNNCGGAAAATCGGCCAAAGTCGGGTAAGGAAGACGAGATCCACGGATCCGGGTCAACCCGAACCCAGAACCCGGGAGAGCCAGCCCGTTCCTCCCTTGGCCTCTGCCTTTGGCCCAGCCCAACTACAGCAGCCCAAACCTCAAACCGGCCCAGAAGCTAAGGTTCAGTTGAACCAACCCAGACTAGACCCACGGTCCAATTGAGCCGGCCTGCAAACCAAACTCCTGCGGTCCAGCCCAGTAAGCCGAGACCCAACGATTAGTCTTGGCCTAATAGCCTTCCACAGCCCACGACCCGAACCACGACCTGAATCGGACTGCGACCTGCGCTTCGACCCGACACTGCCGCCCGACATGGCTTTCTCTGCTACTGCCACGTGTCACACAGCGGCGCAGGCAGTCCCTCAGCTCGGCTCGGCGCAAATGGCTCGGGCTCCCTCCAACGATGCTCCGGCGGCGTTCGGCTCGGCTCACCTATTTTCAGCTCGATTTCCACTGTTCCGACCCTCCCAAATCTGTTTTCGGCCCCGATTAAGGTATCTGATGCCGTTTCAGAGCCGTATTTCACATTTATTAAATTATAGGTAAATTAATTGTGAAATACTAACGAAATATGGTGGACGGTGTGATAGGAAACAAACCCCGGGGACGTAGGGAGCAGCTCTCACGGAACGGGAGCTTACGTTTAGCGATTTAGGGAGTACTTCGGCCAAGGTCAACCAAGTAAGTGGCCTTACTATAGGATAGGCTAAATAAATTGTATGATGCTTGATGTTATGTGCCAGTTTATACATATTTTGTTGAGTGACGCTTGATATGTTTGACGCACGTTGTGGCTTTATGATGAGCATGATGATTGCATGATTTTTACCTTAATATGATGATGTTTTCCATATTGAGCATGCTAGATGATGATGAGTGTCATATTGCATCATGTCGTTAGATCGACATAGGACACAACCCTAAGAGCATGAAAATGATAGTAATATAAATATCCAGGAGTATGCGTTACCTAGAGTAACAAAGAGATGAGACTAGAGGGTTGTGTCAGAAGAGACATTACGATGGATTTAGAGGGACCTCATGCATTTTGTATGTTCATAAGCATAGGGCTACTTCCCCTAGAGATGATGAGTGCGGACGCGCACCTTACGATGAGCGCGAATGCGCACAAGTGCAAAAGCACACAGATGAGAGTGTTCATGAGGCGCATGACACTATGGGGTTCCGCTGA

mRNA sequence

ATGCCTTTTGTTGTACAAGCAGGGTTCGAATTAGAACCCTTATTGCATGAAATGTCTGTAAGCACCCCTGCGGGGGTAGACTTAGTATCTAGGGATAGAGTAAAGGATGGCCAAGTAATCATAGGGAACCAAACTTTAAGCATTGACCTGATGGTGGTAAACATGACAGATTTTGACGCCATACTAGGCATGGATTGGTTAGCTGAAAATCGAGCTAGTATAGACTGCCGCAAAAAGGAAGTAAAATTTTCACCATCGACAGGACCTACCTTTAAATTTAAAGGCACAAATATCGGGATTACCCCCAAGGTAGTCTCGATGATGAAAGCAAAAAGGTTAGTCCAACAAGGTGGATGGGCTATATTAGCATGTGTTGTAGACGTAAGAGGAAAGGAAAAGACCCTAGTAAATGTGCCAATAGTAAACGAGTTCCCGAATGTATTTCCGGATGACTTATCTGGAATATCCCCTTCCCGAGCGGTCGACTTTGTCATCGAACTCGAGCCGAGAACTGGGCCTATTTCCAAAGCACCCTATCGCATGGCGCCAGCAGAGTTGAAAGAACTTAAGGCGCAATTGCAAGACTTACTAGATAAAGGATTCATTCAACCTAGCGTGTCCCCCTGGGGTGCGCCAGTGTTGTTTGTTAAGAAGAAAGATGGATCGATGCGTCTGTGCATCGATTATAGAGAGCTAAACAAGAGAACCGTAAAAAATAAATATCCTCTACCTAGAATAGAAGACTTGTTTGATCAACTCAGAGAGGCAACAATATTCTCTAAGATAGATCTTCGGTCCGGTTACCACCAAATTAGGATTAATGAAAAAGACGTACCAAAAACAGCGTTTAGGACAAGGTACGGTCACTACGAGTTTGTAGTGATGTCATTTGGCCTCACTAATGCCCCAACTGTGTTTATGGAGTTAATGAACCGGGTATTCAAAGAATGCCTAGACATGTTCGTGATTGTGTTCATTGACGACATCCTCATATACTCGAGAACTGACCTAGAGCACGAGGAACACCTCCGAAAAGTCCTTACCACCCTAAGAGAGCACAAGTTGTACGCCAAGTTCTCCAAATGCGAATTTTGGTTACGACAAGTCTCTTTCCTAGGACACATGGTGTCAAAGGACGAAATATCTGTAGATCCCACCAAGGTCGAAGCGATCACAAAGTGGGAACGCCCAACTACGAACCTAAAAGAGAGATTGGTAACCACCCCGGTACTCATAGTACTCGAGAGCTCAGAAGGATATGAGATCTATAGTGATGCCTCCATGAAAGGACTGGGATGTGTGTTAATGCAACACGGCAAGGTTGTCGCATACGCATCTCGTCAACTTAAAGAATATGAAAAGAACTACCCTACCCATGACCTAGAGTTGGCCGCTGTAGTGTTCGCGCTGAAAATCTGGCGACATTACCTGTATGGCGAAAAAACCCAAATTTTTACCGACCACAAAAGTTTGAAATACTTCTTCACCCAGAAAGAGTTAAACATGAGGCAGAGAAGGTGGTTAGAATTGGTGAAGGATTATGACGTAGATATCCAGTACCACCTTGGGAAAGCAAATGTGGTTGCAGATGCCTTGAGTAGGAAGACGGTCCACTCGTCGGCCCTCATTACGAGGGAAGTAAGGGTACAAAGGGAGTTCGAGCGAGCCAACATAGCTGTAGCGACCGAGGGAGTCGTAGCACAGCTGGCCCGACTCACGGTACAACCTACGCTTAGGCAGAGAATTATTACCTCCCAACGAGAGGATCCTAACCTACAGAAAGTCCTAGGACAGCTAGACGAAAGTCCAGTAGATGGATTCTCGAAGTCATCAGATGAAGGACTATTGTATCAGGGACGCTTATGTGTTCCGGCAATAGAAGATTTAAGGAAGGAAATACTGATGGAAGCTCACAACTCACCATTTTTCATGCATCCAAGAGGTACTAAGATGTACCAAGATTTAAAACAACACTTTTGGTGGAAGAGCATGAAGAGAGATGTGGCCGGGTTTGTGAGCAAGTGCTTAGTTTGTCAACAAGTGAAAGCTCCAAGACAAAAGGCGGCGGGGTTGTTGCAGCCCCTAAGCATACCGGAGTGGAAGTGGGAAAACATAGCGATGGACTTCATAGTAGGTTTACCCAAAACGCCCAAAGGCTACACAGTGATCTGGGTAGTTGTCGATAGGTTGACCAAGTCGGCACACTTCCTACCCGGGAAGGTCACATATACAGTTGACAATTGGGCACAACTGTATGTGAAAGAAATAGTAAGACTACACGGAGTCCCAGTGTCTATAGTGTCGGATCGGGATCCCCGCTTTACGTCAGCGTTTTGGCGTGGACTTCAAAAAGCACTGGGTACCCGCCTCGACTTTAGTACCGCCTTTCACCCCCAAACAGATGGACAAACGGAGCGTTTAAACCAAATTCTAGAGGACATGCTACGCGCTTGCGTACTAGATTTTAAGGAAAGTTGGGATTCCAAACTCCACCTGATGGAATTCTCGTATAACAATAGTTTCCAAGCAACTATTGGAATGGCACCGTTTGAGGCCCTGTACGGAAAACGGTGTAGGTCCCCACTACGTTGGGACAAGGTAGGAGAGAGAGAATTAGTAGGACCCGAGTTGGTTCGACTCACCAATGAGGCTGTCCAGAAAATTCGAGCGAGGATGCGTACCGCTCAAAGTAGACAGAAAAGCTACGCCGATGTAAGGCGTAAAAGCCTGGAGTTTGAGGTGGGGGACCCAGTATTCCTCAAGGTGGCACCTATGAAAGGTGTGTTAAGATTTGGGCATAAGGGCAAGTTAAGTCCTAAATTCATTGGACCATTTGAGATCCTAGAGCGAGTTGGTCTAGTAGTGTATAAGTTAGCCTTACCTCCAGCTCTCTCAGGAGTACATGATGTATTTCACGTGTCGATGCTGAGGAAGTACATCACGGATCCTATCCACGTTATAGACTACAAACCACTCCAGCTCAATGAAGATCTGAGCTACGAGGAAAAACCAGTAAGAATCTTAGCTAGAGAAGTAAAAACCTTACGCAACAGGAGCATTGCGTTCGTTAAGGAGCTTTTAGGCCGCAAAACTCCCAGAAAGAAAAGGACGAAGAACAAAGAGGAAAAGGGAAGGAAGAGGACCGAAATTGGCAACGAAAACGCCGCGGGAAGGAGAGAGAAAGCTCGCCGGAAAATCGGCCAAAGTCGGCCCAACTACAGCAGCCCAAACCTCAAACCGGCCCAGAAGCTAAGCCCACGACCCGAACCACGACCTGAATCGGACTGCGACCTGCGCTTCGACCCGACACTGCCGCCCGACATGGCTTTCTCTGCTACTGCCACGTGTCACACAGCGGCGCAGGCAGTCCCTCAGCTCGGCTCGGCGCAAATGGCTCGGGCTCCCTCCAACGATGCTCCGGCGGCGTTCGGCTCGGCTCACCTATTTTCAGCTCGATTTCCACTGTTCCGACCCTCCCAAATCTGTTTTCGGCCCCGATTAAGCCCACGACCCGAACCACGACCTGAATCGGACTGCGACCTGCGCTTCGACCCGACACTGCCGCCCGACATGGCTTTCTCTGCTACTGCCACGTGTCACACAGCGGCGCAGGCAGTCCCTCAGCTCGGCTCGGCGCAAATGGCTCGGGCTCCCTCCAACGATGCTCCGGCGGCGTTCGGCTCGGCTCACCTATTTTCAGCTCGATTTCCACTGTTCCGACCCTCCCAAATCTGTTTTCGGCCCCGATTAAGGGCTACTTCCCCTAGAGATGATGAGTGCGGACGCGCACCTTACGATGAGCGCGAATGCGCACAAGTGCAAAAGCACACAGATGAGAGTGTTCATGAGGCGCATGACACTATGGGGTTCCGCTGA

Coding sequence (CDS)

ATGCCTTTTGTTGTACAAGCAGGGTTCGAATTAGAACCCTTATTGCATGAAATGTCTGTAAGCACCCCTGCGGGGGTAGACTTAGTATCTAGGGATAGAGTAAAGGATGGCCAAGTAATCATAGGGAACCAAACTTTAAGCATTGACCTGATGGTGGTAAACATGACAGATTTTGACGCCATACTAGGCATGGATTGGTTAGCTGAAAATCGAGCTAGTATAGACTGCCGCAAAAAGGAAGTAAAATTTTCACCATCGACAGGACCTACCTTTAAATTTAAAGGCACAAATATCGGGATTACCCCCAAGGTAGTCTCGATGATGAAAGCAAAAAGGTTAGTCCAACAAGGTGGATGGGCTATATTAGCATGTGTTGTAGACGTAAGAGGAAAGGAAAAGACCCTAGTAAATGTGCCAATAGTAAACGAGTTCCCGAATGTATTTCCGGATGACTTATCTGGAATATCCCCTTCCCGAGCGGTCGACTTTGTCATCGAACTCGAGCCGAGAACTGGGCCTATTTCCAAAGCACCCTATCGCATGGCGCCAGCAGAGTTGAAAGAACTTAAGGCGCAATTGCAAGACTTACTAGATAAAGGATTCATTCAACCTAGCGTGTCCCCCTGGGGTGCGCCAGTGTTGTTTGTTAAGAAGAAAGATGGATCGATGCGTCTGTGCATCGATTATAGAGAGCTAAACAAGAGAACCGTAAAAAATAAATATCCTCTACCTAGAATAGAAGACTTGTTTGATCAACTCAGAGAGGCAACAATATTCTCTAAGATAGATCTTCGGTCCGGTTACCACCAAATTAGGATTAATGAAAAAGACGTACCAAAAACAGCGTTTAGGACAAGGTACGGTCACTACGAGTTTGTAGTGATGTCATTTGGCCTCACTAATGCCCCAACTGTGTTTATGGAGTTAATGAACCGGGTATTCAAAGAATGCCTAGACATGTTCGTGATTGTGTTCATTGACGACATCCTCATATACTCGAGAACTGACCTAGAGCACGAGGAACACCTCCGAAAAGTCCTTACCACCCTAAGAGAGCACAAGTTGTACGCCAAGTTCTCCAAATGCGAATTTTGGTTACGACAAGTCTCTTTCCTAGGACACATGGTGTCAAAGGACGAAATATCTGTAGATCCCACCAAGGTCGAAGCGATCACAAAGTGGGAACGCCCAACTACGAACCTAAAAGAGAGATTGGTAACCACCCCGGTACTCATAGTACTCGAGAGCTCAGAAGGATATGAGATCTATAGTGATGCCTCCATGAAAGGACTGGGATGTGTGTTAATGCAACACGGCAAGGTTGTCGCATACGCATCTCGTCAACTTAAAGAATATGAAAAGAACTACCCTACCCATGACCTAGAGTTGGCCGCTGTAGTGTTCGCGCTGAAAATCTGGCGACATTACCTGTATGGCGAAAAAACCCAAATTTTTACCGACCACAAAAGTTTGAAATACTTCTTCACCCAGAAAGAGTTAAACATGAGGCAGAGAAGGTGGTTAGAATTGGTGAAGGATTATGACGTAGATATCCAGTACCACCTTGGGAAAGCAAATGTGGTTGCAGATGCCTTGAGTAGGAAGACGGTCCACTCGTCGGCCCTCATTACGAGGGAAGTAAGGGTACAAAGGGAGTTCGAGCGAGCCAACATAGCTGTAGCGACCGAGGGAGTCGTAGCACAGCTGGCCCGACTCACGGTACAACCTACGCTTAGGCAGAGAATTATTACCTCCCAACGAGAGGATCCTAACCTACAGAAAGTCCTAGGACAGCTAGACGAAAGTCCAGTAGATGGATTCTCGAAGTCATCAGATGAAGGACTATTGTATCAGGGACGCTTATGTGTTCCGGCAATAGAAGATTTAAGGAAGGAAATACTGATGGAAGCTCACAACTCACCATTTTTCATGCATCCAAGAGGTACTAAGATGTACCAAGATTTAAAACAACACTTTTGGTGGAAGAGCATGAAGAGAGATGTGGCCGGGTTTGTGAGCAAGTGCTTAGTTTGTCAACAAGTGAAAGCTCCAAGACAAAAGGCGGCGGGGTTGTTGCAGCCCCTAAGCATACCGGAGTGGAAGTGGGAAAACATAGCGATGGACTTCATAGTAGGTTTACCCAAAACGCCCAAAGGCTACACAGTGATCTGGGTAGTTGTCGATAGGTTGACCAAGTCGGCACACTTCCTACCCGGGAAGGTCACATATACAGTTGACAATTGGGCACAACTGTATGTGAAAGAAATAGTAAGACTACACGGAGTCCCAGTGTCTATAGTGTCGGATCGGGATCCCCGCTTTACGTCAGCGTTTTGGCGTGGACTTCAAAAAGCACTGGGTACCCGCCTCGACTTTAGTACCGCCTTTCACCCCCAAACAGATGGACAAACGGAGCGTTTAAACCAAATTCTAGAGGACATGCTACGCGCTTGCGTACTAGATTTTAAGGAAAGTTGGGATTCCAAACTCCACCTGATGGAATTCTCGTATAACAATAGTTTCCAAGCAACTATTGGAATGGCACCGTTTGAGGCCCTGTACGGAAAACGGTGTAGGTCCCCACTACGTTGGGACAAGGTAGGAGAGAGAGAATTAGTAGGACCCGAGTTGGTTCGACTCACCAATGAGGCTGTCCAGAAAATTCGAGCGAGGATGCGTACCGCTCAAAGTAGACAGAAAAGCTACGCCGATGTAAGGCGTAAAAGCCTGGAGTTTGAGGTGGGGGACCCAGTATTCCTCAAGGTGGCACCTATGAAAGGTGTGTTAAGATTTGGGCATAAGGGCAAGTTAAGTCCTAAATTCATTGGACCATTTGAGATCCTAGAGCGAGTTGGTCTAGTAGTGTATAAGTTAGCCTTACCTCCAGCTCTCTCAGGAGTACATGATGTATTTCACGTGTCGATGCTGAGGAAGTACATCACGGATCCTATCCACGTTATAGACTACAAACCACTCCAGCTCAATGAAGATCTGAGCTACGAGGAAAAACCAGTAAGAATCTTAGCTAGAGAAGTAAAAACCTTACGCAACAGGAGCATTGCGTTCGTTAAGGAGCTTTTAGGCCGCAAAACTCCCAGAAAGAAAAGGACGAAGAACAAAGAGGAAAAGGGAAGGAAGAGGACCGAAATTGGCAACGAAAACGCCGCGGGAAGGAGAGAGAAAGCTCGCCGGAAAATCGGCCAAAGTCGGCCCAACTACAGCAGCCCAAACCTCAAACCGGCCCAGAAGCTAAGCCCACGACCCGAACCACGACCTGAATCGGACTGCGACCTGCGCTTCGACCCGACACTGCCGCCCGACATGGCTTTCTCTGCTACTGCCACGTGTCACACAGCGGCGCAGGCAGTCCCTCAGCTCGGCTCGGCGCAAATGGCTCGGGCTCCCTCCAACGATGCTCCGGCGGCGTTCGGCTCGGCTCACCTATTTTCAGCTCGATTTCCACTGTTCCGACCCTCCCAAATCTGTTTTCGGCCCCGATTAAGCCCACGACCCGAACCACGACCTGAATCGGACTGCGACCTGCGCTTCGACCCGACACTGCCGCCCGACATGGCTTTCTCTGCTACTGCCACGTGTCACACAGCGGCGCAGGCAGTCCCTCAGCTCGGCTCGGCGCAAATGGCTCGGGCTCCCTCCAACGATGCTCCGGCGGCGTTCGGCTCGGCTCACCTATTTTCAGCTCGATTTCCACTGTTCCGACCCTCCCAAATCTGTTTTCGGCCCCGATTAAGGGCTACTTCCCCTAGAGATGATGAGTGCGGACGCGCACCTTACGATGAGCGCGAATGCGCACAAGTGCAAAAGCACACAGATGAGAGTGTTCATGAGGCGCATGACACTATGGGGTTCCGCTGA

Protein sequence

MPFVVQAGFELEPLLHEMSVSTPAGVDLVSRDRVKDGQVIIGNQTLSIDLMVVNMTDFDAILGMDWLAENRASIDCRKKEVKFSPSTGPTFKFKGTNIGITPKVVSMMKAKRLVQQGGWAILACVVDVRGKEKTLVNVPIVNEFPNVFPDDLSGISPSRAVDFVIELEPRTGPISKAPYRMAPAELKELKAQLQDLLDKGFIQPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLREATIFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPTVFMELMNRVFKECLDMFVIVFIDDILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFWLRQVSFLGHMVSKDEISVDPTKVEAITKWERPTTNLKERLVTTPVLIVLESSEGYEIYSDASMKGLGCVLMQHGKVVAYASRQLKEYEKNYPTHDLELAAVVFALKIWRHYLYGEKTQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDVDIQYHLGKANVVADALSRKTVHSSALITREVRVQREFERANIAVATEGVVAQLARLTVQPTLRQRIITSQREDPNLQKVLGQLDESPVDGFSKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFFMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPEWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLDFKESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLRWDKVGERELVGPELVRLTNEAVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRFGHKGKLSPKFIGPFEILERVGLVVYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYKPLQLNEDLSYEEKPVRILAREVKTLRNRSIAFVKELLGRKTPRKKRTKNKEEKGRKRTEIGNENAAGRREKARRKIGQSRPNYSSPNLKPAQKLSPRPEPRPESDCDLRFDPTLPPDMAFSATATCHTAAQAVPQLGSAQMARAPSNDAPAAFGSAHLFSARFPLFRPSQICFRPRLSPRPEPRPESDCDLRFDPTLPPDMAFSATATCHTAAQAVPQLGSAQMARAPSNDAPAAFGSAHLFSARFPLFRPSQICFRPRLRATSPRDDECGRAPYDERECAQVQKHTDESVHEAHDTMGFR

Homology

[Close]

BLAST of CmoCh11G012340 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 429.5 bits (1103), Expect = 1.4e-118
Identity = 292/903 (32.34%), Postives = 441/903 (48.84%), Query Frame = 0


Query: 149  PDDLSGISPSRAVDFVIELEPRTGPISKAPYRMAPAELKELKAQLQDLLDKGFIQPSVSP 208
            P D++ I     V   IE++P        PY +     +E+   +Q LLD  FI PS SP
Sbjct: 576  PADINNI----PVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSP 635

Query: 209  WGAPVLFVKKKDGSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLREATIFSKIDLRSGY 268
              +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRI++L  ++  A IF+ +DL SGY
Sbjct: 636  CSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGY 695

Query: 269  HQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPTVFMELMNRVFKECLDMFVIVFIDD 328
            HQI +  KD  KTAF T  G YE+ VM FGL NAP+ F   M   F++    FV V++DD
Sbjct: 696  HQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDD 755

Query: 329  ILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFWLRQVSFLGHMVSKDEISVDPTKV 388
            ILI+S +  EH +HL  VL  L+   L  K  KC+F   +  FLG+ +   +I+    K 
Sbjct: 756  ILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKC 815

Query: 389  EAITKWERPTT-----------------------------------------------NL 448
             AI  +  P T                                                L
Sbjct: 816  AAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQWTEKQDKAIDKL 875

Query: 449  KERLVTTPVLIVLESSEGYEIYSDASMKGLGCVLMQHGK------VVAYASRQLKEYEKN 508
            K+ L  +PVL+   +   Y + +DAS  G+G VL +         VV Y S+ L+  +KN
Sbjct: 876  KDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKN 935

Query: 509  YPTHDLELAAVVFALKIWRHYLYGEKTQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYD 568
            YP  +LEL  ++ AL  +R+ L+G+   + TDH SL     + E   R +RWL+ +  YD
Sbjct: 936  YPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYD 995

Query: 569  VDIQYHLGKANVVADALSRKTVHSSALITREVRVQREFERANIAVATEGVVAQLARLTVQ 628
              ++Y  G  NVVADA+SR     +   +R +  +              V+  +  LT Q
Sbjct: 996  FTLEYLAGPKNVVADAISRAVYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELT-Q 1055

Query: 629  PTLRQRIITSQREDPNLQKVLGQLDESPVDGFSKSSDEGLLYQGRLCVPAIEDLRKEILM 688
              +    +++ R   + QK L +L E+    +S   DE + YQ RL VP I+     + +
Sbjct: 1056 HNVTPEDMSAFR---SYQKKL-ELSETFRKNYS-LEDEMIYYQDRLVVP-IKQQNAVMRL 1115

Query: 689  EAHNSPFFMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPL 748
               ++ F  H   T     +   ++W  ++  +  ++  C+ CQ +K+ R +  GLLQPL
Sbjct: 1116 YHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPL 1175

Query: 749  SIPEWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKE 808
             I E +W +I+MDF+ GLP T     +I VVVDR +K AHF+  + T        L  + 
Sbjct: 1176 PIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRY 1235

Query: 809  IVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTERLNQILEDML 868
            I   HG P +I SDRD R T+  ++ L K LG +   S+A HPQTDGQ+ER  Q L  +L
Sbjct: 1236 IFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLL 1295

Query: 869  RACVLDFKESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPL--RWDKVGERELV 928
            RA      ++W   L  +EF YN++   T+G +PFE   G    +P     D+V  R   
Sbjct: 1296 RAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFT 1355

Query: 929  GPELVRLTNEAVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRFGH 988
              EL +       + + ++  AQ   ++  + RRK L   +GD V +         + G 
Sbjct: 1356 AVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVH---RDAYFKKGA 1415

Query: 989  KGKLSPKFIGPFEILERVGLVVYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYKPLQ 997
              K+   ++GPF +++++    Y+L L  +    H V +V  L+K++  P      KP+ 
Sbjct: 1416 YMKVQQIYVGPFRVVKKINDNAYELDL-NSHKKKHRVINVQFLKKFVYRPDAYPKNKPIS 1461

[Close]

BLAST of CmoCh11G012340 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 422.9 bits (1086), Expect = 1.3e-116
Identity = 294/924 (31.82%), Postives = 448/924 (48.48%), Query Frame = 0


Query: 149  PDDLSGISPSRAVDFVIELEPRTGPISKAPYRMAPAELKELKAQLQDLLDKGFIQPSVSP 208
            P D++ I     V   IE++P        PY +     +E+   +Q LLD  FI PS SP
Sbjct: 602  PADINNI----PVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSP 661

Query: 209  WGAPVLFVKKKDGSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLREATIFSKIDLRSGY 268
              +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRI++L  ++  A IF+ +DL SGY
Sbjct: 662  CSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGY 721

Query: 269  HQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPTVFMELMNRVFKECLDMFVIVFIDD 328
            HQI +  KD  KTAF T  G YE+ VM FGL NAP+ F   M   F++    FV V++DD
Sbjct: 722  HQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDD 781

Query: 329  ILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFWLRQVSFLGHMVSKDEISVDPTKV 388
            ILI+S +  EH +HL  VL  L+   L  K  KC+F   +  FLG+ +   +I+    K 
Sbjct: 782  ILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKC 841

Query: 389  EAITKWERPTT-----------------------------------------------NL 448
             AI  +  P T                                                L
Sbjct: 842  AAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQWTEKQDKAIEKL 901

Query: 449  KERLVTTPVLIVLESSEGYEIYSDASMKGLGCVLMQHGK------VVAYASRQLKEYEKN 508
            K  L  +PVL+   +   Y + +DAS  G+G VL +         VV Y S+ L+  +KN
Sbjct: 902  KAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKN 961

Query: 509  YPTHDLELAAVVFALKIWRHYLYGEKTQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYD 568
            YP  +LEL  ++ AL  +R+ L+G+   + TDH SL     + E   R +RWL+ +  YD
Sbjct: 962  YPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYD 1021

Query: 569  VDIQYHLGKANVVADALSRKTVHSSALITREVRVQREFERANIAVATEGVVAQLARLTVQ 628
              ++Y  G  NVVADA+SR     +   +R +  +              V+  +  LT Q
Sbjct: 1022 FTLEYLAGPKNVVADAISRAIYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELT-Q 1081

Query: 629  PTLRQRIITSQREDPNLQKVLGQLDESPVDGFSKSSDEGLLYQGRLCVPAIEDLRKEILM 688
              +    +++ R   + QK L +L E+    +S   DE + YQ RL VP I+     + +
Sbjct: 1082 HNVTPEDMSAFR---SYQKKL-ELSETFRKNYS-LEDEMIYYQDRLVVP-IKQQNAVMRL 1141

Query: 689  EAHNSPFFMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPL 748
               ++ F  H   T     +   ++W  ++  +  ++  C+ CQ +K+ R +  GLLQPL
Sbjct: 1142 YHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPL 1201

Query: 749  SIPEWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKE 808
             I E +W +I+MDF+ GLP T     +I VVVDR +K AHF+  + T        L  + 
Sbjct: 1202 PIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRY 1261

Query: 809  IVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTERLNQILEDML 868
            I   HG P +I SDRD R T+  ++ L K LG +   S+A HPQTDGQ+ER  Q L  +L
Sbjct: 1262 IFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLL 1321

Query: 869  RACVLDFKESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPL--RWDKVGERELV 928
            RA V    ++W   L  +EF YN++   T+G +PFE   G    +P     D+V  R   
Sbjct: 1322 RAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFT 1381

Query: 929  GPELVRLTNEAVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRFGH 988
              EL +       + + ++  AQ   ++  + RRK L   +GD V +         + G 
Sbjct: 1382 AVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVH---RDAYFKKGA 1441

Query: 989  KGKLSPKFIGPFEILERVGLVVYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYKPLQ 1018
              K+   ++GPF +++++    Y+L L  +    H V +V  L+      ++ +  +  +
Sbjct: 1442 YMKVQQIYVGPFRVVKKINDNAYELDL-NSHKKKHRVINVQFLKS-----LYTVQTRTQR 1498

[Close]

BLAST of CmoCh11G012340 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 2.5e-112
Identity = 259/887 (29.20%), Postives = 437/887 (49.27%), Query Frame = 0


Query: 157  PSRAVDFVIELEPRTGPISKAPYRMAPAELKELKAQLQDLLDKGFIQPSVSPWGAPVLFV 216
            P + ++F +EL      +    Y + P +++ +  ++   L  G I+ S +    PV+FV
Sbjct: 396  PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455

Query: 217  KKKDGSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLREATIFSKIDLRSGYHQIRINEK 276
             KK+G++R+ +DY+ LNK    N YPLP IE L  +++ +TIF+K+DL+S YH IR+ + 
Sbjct: 456  PKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 515

Query: 277  DVPKTAFRTRYGHYEFVVMSFGLTNAPTVFMELMNRVFKECLDMFVIVFIDDILIYSRTD 336
            D  K AFR   G +E++VM +G++ AP  F   +N +  E  +  V+ ++DDILI+S+++
Sbjct: 516  DEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSE 575

Query: 337  LEHEEHLRKVLTTLREHKLYAKFSKCEFWLRQVSFLGHMVSKDEISVDPTKVEAITKWER 396
             EH +H++ VL  L+   L    +KCEF   QV F+G+ +S+   +     ++ + +W++
Sbjct: 576  SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQ 635

Query: 397  PTT-------------------------------------------------NLKERLVT 456
            P                                                   N+K+ LV+
Sbjct: 636  PKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVS 695

Query: 457  TPVLIVLESSEGYEIYSDASMKGLGCVLMQHGK-----VVAYASRQLKEYEKNYPTHDLE 516
             PVL   + S+   + +DAS   +G VL Q         V Y S ++ + + NY   D E
Sbjct: 696  PPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755

Query: 517  LAAVVFALKIWRHYLYG--EKTQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDVDI 576
            + A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ +I
Sbjct: 756  MLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEI 815

Query: 577  QYHLGKANVVADALSRKTVHSSALITREVRVQREFERANIAVATEGVVAQLARLTVQPTL 636
             Y  G AN +ADALSR       ++     + ++ E  +I    +        +++    
Sbjct: 816  NYRPGSANHIADALSR-------IVDETEPIPKDSEDNSINFVNQ--------ISITDDF 875

Query: 637  RQRIITSQREDPNLQKVLGQLDESPVDGFSKSSDEGLLYQGR--LCVPAIEDLRKEILME 696
            + +++T    D  L  +L   D+   +       +GLL   +  + +P    L + I+ +
Sbjct: 876  KNQVVTEYTNDTKLLNLLNNEDKRVEENIQLK--DGLLINSKDQILLPNDTQLTRTIIKK 935

Query: 697  AHNSPFFMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLS 756
             H     +HP    +   + + F WK +++ +  +V  C  CQ  K+   K  G LQP+ 
Sbjct: 936  YHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIP 995

Query: 757  IPEWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEI 816
              E  WE+++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+++ + +
Sbjct: 996  PSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRV 1055

Query: 817  VRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTERLNQILEDMLR 876
            +   G P  I++D D  FTS  W+         + FS  + PQTDGQTER NQ +E +LR
Sbjct: 1056 IAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLR 1115

Query: 877  ACVLDFKESWDSKLHLMEFSYNNSFQATIGMAPFEALYG-KRCRSPLRWDKVGERELVGP 936
                    +W   + L++ SYNN+  +   M PFE ++      SPL      ++     
Sbjct: 1116 CVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---D 1175

Query: 937  ELVRLTNEAVQKIRARMRTAQSRQKSYADVRRKSL-EFEVGDPVFLKVAPMKGVLRFGHK 980
            E  + T +  Q ++  + T   + K Y D++ + + EF+ GD V +K    +    F HK
Sbjct: 1176 ENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHK 1235

[Close]

BLAST of CmoCh11G012340 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 2.5e-112
Identity = 259/887 (29.20%), Postives = 437/887 (49.27%), Query Frame = 0


Query: 157  PSRAVDFVIELEPRTGPISKAPYRMAPAELKELKAQLQDLLDKGFIQPSVSPWGAPVLFV 216
            P + ++F +EL      +    Y + P +++ +  ++   L  G I+ S +    PV+FV
Sbjct: 396  PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455

Query: 217  KKKDGSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLREATIFSKIDLRSGYHQIRINEK 276
             KK+G++R+ +DY+ LNK    N YPLP IE L  +++ +TIF+K+DL+S YH IR+ + 
Sbjct: 456  PKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 515

Query: 277  DVPKTAFRTRYGHYEFVVMSFGLTNAPTVFMELMNRVFKECLDMFVIVFIDDILIYSRTD 336
            D  K AFR   G +E++VM +G++ AP  F   +N +  E  +  V+ ++DDILI+S+++
Sbjct: 516  DEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSE 575

Query: 337  LEHEEHLRKVLTTLREHKLYAKFSKCEFWLRQVSFLGHMVSKDEISVDPTKVEAITKWER 396
             EH +H++ VL  L+   L    +KCEF   QV F+G+ +S+   +     ++ + +W++
Sbjct: 576  SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQ 635

Query: 397  PTT-------------------------------------------------NLKERLVT 456
            P                                                   N+K+ LV+
Sbjct: 636  PKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVS 695

Query: 457  TPVLIVLESSEGYEIYSDASMKGLGCVLMQHGK-----VVAYASRQLKEYEKNYPTHDLE 516
             PVL   + S+   + +DAS   +G VL Q         V Y S ++ + + NY   D E
Sbjct: 696  PPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755

Query: 517  LAAVVFALKIWRHYLYG--EKTQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDVDI 576
            + A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ +I
Sbjct: 756  MLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEI 815

Query: 577  QYHLGKANVVADALSRKTVHSSALITREVRVQREFERANIAVATEGVVAQLARLTVQPTL 636
             Y  G AN +ADALSR       ++     + ++ E  +I    +        +++    
Sbjct: 816  NYRPGSANHIADALSR-------IVDETEPIPKDSEDNSINFVNQ--------ISITDDF 875

Query: 637  RQRIITSQREDPNLQKVLGQLDESPVDGFSKSSDEGLLYQGR--LCVPAIEDLRKEILME 696
            + +++T    D  L  +L   D+   +       +GLL   +  + +P    L + I+ +
Sbjct: 876  KNQVVTEYTNDTKLLNLLNNEDKRVEENIQLK--DGLLINSKDQILLPNDTQLTRTIIKK 935

Query: 697  AHNSPFFMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLS 756
             H     +HP    +   + + F WK +++ +  +V  C  CQ  K+   K  G LQP+ 
Sbjct: 936  YHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIP 995

Query: 757  IPEWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEI 816
              E  WE+++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+++ + +
Sbjct: 996  PSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRV 1055

Query: 817  VRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTERLNQILEDMLR 876
            +   G P  I++D D  FTS  W+         + FS  + PQTDGQTER NQ +E +LR
Sbjct: 1056 IAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLR 1115

Query: 877  ACVLDFKESWDSKLHLMEFSYNNSFQATIGMAPFEALYG-KRCRSPLRWDKVGERELVGP 936
                    +W   + L++ SYNN+  +   M PFE ++      SPL      ++     
Sbjct: 1116 CVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---D 1175

Query: 937  ELVRLTNEAVQKIRARMRTAQSRQKSYADVRRKSL-EFEVGDPVFLKVAPMKGVLRFGHK 980
            E  + T +  Q ++  + T   + K Y D++ + + EF+ GD V +K    +    F HK
Sbjct: 1176 ENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHK 1235

[Close]

BLAST of CmoCh11G012340 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 2.5e-112
Identity = 259/887 (29.20%), Postives = 437/887 (49.27%), Query Frame = 0


Query: 157  PSRAVDFVIELEPRTGPISKAPYRMAPAELKELKAQLQDLLDKGFIQPSVSPWGAPVLFV 216
            P + ++F +EL      +    Y + P +++ +  ++   L  G I+ S +    PV+FV
Sbjct: 396  PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455

Query: 217  KKKDGSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLREATIFSKIDLRSGYHQIRINEK 276
             KK+G++R+ +DY+ LNK    N YPLP IE L  +++ +TIF+K+DL+S YH IR+ + 
Sbjct: 456  PKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 515

Query: 277  DVPKTAFRTRYGHYEFVVMSFGLTNAPTVFMELMNRVFKECLDMFVIVFIDDILIYSRTD 336
            D  K AFR   G +E++VM +G++ AP  F   +N +  E  +  V+ ++DDILI+S+++
Sbjct: 516  DEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSE 575

Query: 337  LEHEEHLRKVLTTLREHKLYAKFSKCEFWLRQVSFLGHMVSKDEISVDPTKVEAITKWER 396
             EH +H++ VL  L+   L    +KCEF   QV F+G+ +S+   +     ++ + +W++
Sbjct: 576  SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQ 635

Query: 397  PTT-------------------------------------------------NLKERLVT 456
            P                                                   N+K+ LV+
Sbjct: 636  PKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVS 695

Query: 457  TPVLIVLESSEGYEIYSDASMKGLGCVLMQHGK-----VVAYASRQLKEYEKNYPTHDLE 516
             PVL   + S+   + +DAS   +G VL Q         V Y S ++ + + NY   D E
Sbjct: 696  PPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755

Query: 517  LAAVVFALKIWRHYLYG--EKTQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDVDI 576
            + A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ +I
Sbjct: 756  MLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEI 815

Query: 577  QYHLGKANVVADALSRKTVHSSALITREVRVQREFERANIAVATEGVVAQLARLTVQPTL 636
             Y  G AN +ADALSR       ++     + ++ E  +I    +        +++    
Sbjct: 816  NYRPGSANHIADALSR-------IVDETEPIPKDSEDNSINFVNQ--------ISITDDF 875

Query: 637  RQRIITSQREDPNLQKVLGQLDESPVDGFSKSSDEGLLYQGR--LCVPAIEDLRKEILME 696
            + +++T    D  L  +L   D+   +       +GLL   +  + +P    L + I+ +
Sbjct: 876  KNQVVTEYTNDTKLLNLLNNEDKRVEENIQLK--DGLLINSKDQILLPNDTQLTRTIIKK 935

Query: 697  AHNSPFFMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLS 756
             H     +HP    +   + + F WK +++ +  +V  C  CQ  K+   K  G LQP+ 
Sbjct: 936  YHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIP 995

Query: 757  IPEWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEI 816
              E  WE+++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+++ + +
Sbjct: 996  PSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRV 1055

Query: 817  VRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTERLNQILEDMLR 876
            +   G P  I++D D  FTS  W+         + FS  + PQTDGQTER NQ +E +LR
Sbjct: 1056 IAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLR 1115

Query: 877  ACVLDFKESWDSKLHLMEFSYNNSFQATIGMAPFEALYG-KRCRSPLRWDKVGERELVGP 936
                    +W   + L++ SYNN+  +   M PFE ++      SPL      ++     
Sbjct: 1116 CVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---D 1175

Query: 937  ELVRLTNEAVQKIRARMRTAQSRQKSYADVRRKSL-EFEVGDPVFLKVAPMKGVLRFGHK 980
            E  + T +  Q ++  + T   + K Y D++ + + EF+ GD V +K    +    F HK
Sbjct: 1176 ENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHK 1235

[Close]

BLAST of CmoCh11G012340 vs. ExPASy TrEMBL
Match: A0A6J1EYH9 (Reverse transcriptase OS=Cucurbita moschata OX=3662 GN=LOC111440131 PE=4 SV=1)

HSP 1 Score: 1505.7 bits (3897), Expect = 0.0e+00
Identity = 847/1474 (57.46%), Postives = 905/1474 (61.40%), Query Frame = 0


Query: 2    PFVVQAGFELEPLLHEMSVSTPAGVDLVSRDRVKDGQVIIGNQTLSIDLMVVNMTDFDAI 61
            PF+ QAGF +EPL+H +SV TPAGVDLV++DRV+DGQV+I  QT+ +DL VV+MTDFD I
Sbjct: 377  PFIKQAGFVIEPLMHALSVGTPAGVDLVTKDRVRDGQVVIAGQTIHVDLKVVDMTDFDVI 436

Query: 62   LGMDWLAENRASIDCRKKEVKFSPSTGPTFKFKGTNIGITPKVVSMMKAKRLVQQGGWAI 121
            LGMDWLAEN A+IDC KKEV F+P  G TFKFKGT+ G TPK++SMMKA+RL+QQGGWA 
Sbjct: 437  LGMDWLAENFATIDCHKKEVIFTPPNGLTFKFKGTSTGTTPKIISMMKARRLIQQGGWAF 496

Query: 122  LACVVDVRGKEKTLVNVPIVNEFPNVFPDDLSGISPSRAVDFVIELEPRTGPISKAPYRM 181
            LA  V+ +GKEK +  +P+VNEF +VFP+DL GI PSR VDF I+LE  TGPISKAPYRM
Sbjct: 497  LAYAVNTKGKEKPIDTIPVVNEFMDVFPEDLPGIPPSREVDFGIDLELGTGPISKAPYRM 556

Query: 182  APAELKELKAQLQDLLDKGFIQPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKRTVKNKY 241
            APAELKELK QLQDLLD                    KD SMRLCI YRELNKRTVKNKY
Sbjct: 557  APAELKELKTQLQDLLD--------------------KDDSMRLCIGYRELNKRTVKNKY 616

Query: 242  PLPRIEDLFDQLREATIFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTN 301
            PLPRIEDLFDQLR AT+FSKIDLRSGYHQI+I  +D+PKTAFRTRYGHYEFVVMSFGLTN
Sbjct: 617  PLPRIEDLFDQLRGATVFSKIDLRSGYHQIKIKNEDIPKTAFRTRYGHYEFVVMSFGLTN 676

Query: 302  APTVFMELMNRVFKECLDMFVIVFIDDILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSK 361
            AP VFMELMNRVFKECLD+FVIVFIDDILIYS+TDL+H+EHLRK LT LRE+KLYA F+K
Sbjct: 677  APAVFMELMNRVFKECLDLFVIVFIDDILIYSKTDLKHQEHLRKALTILRENKLYANFTK 736

Query: 362  CEFWLRQVSFLGHMVSKDEISVDPTKVEAITKWERPTT---------------------- 421
            CEFW+ QVSFLGH+VSKD I VDP K+EA+TK +RPTT                      
Sbjct: 737  CEFWIXQVSFLGHIVSKDGIFVDPNKIEAVTKRKRPTTVTEIRSFLGLVGYYRRFVXDFA 796

Query: 422  ---------------------------NLKERLVTTPVLIVLESSEGYEIYSDASMKGLG 481
                                        LK+RLV+ PVL V ESS GY IYSDAS KGLG
Sbjct: 797  RIATPLTQLTKKGVPFVWDDTCEVSFQELKQRLVSAPVLTVPESSVGYAIYSDASKKGLG 856

Query: 482  CVLMQHGKVVAYASRQLKEYEKNYPTHDLELAAVVFALKIWRHYLYGEKTQIFTDHKSLK 541
            CVLMQHGKVVAYAS QLK+YEKNYPTHDLELAAVVFALKIWRHY YGEKTQI+TDHKSLK
Sbjct: 857  CVLMQHGKVVAYASHQLKDYEKNYPTHDLELAAVVFALKIWRHYPYGEKTQIYTDHKSLK 916

Query: 542  YFFTQKELNMRQRRWLELVKDYDVDIQYHLGKANVVA----------------------- 601
            Y FTQKELNMRQRRWLELVKDYD+DIQYH GKANVVA                       
Sbjct: 917  YLFTQKELNMRQRRWLELVKDYDIDIQYHPGKANVVADALSRKVVHSSALITREPRGRTD 976

Query: 602  ------------------------------------------------------------ 661
                                                                        
Sbjct: 977  FEQADIVVVTKEVAAQLARMTVRPTLRQRIIDSQREDPSLSKILDQLEVGPVDGFTKSTD 1036

Query: 662  ------------------------------------------------------------ 721
                                                                        
Sbjct: 1037 DGLLCQGRLCVPPLSGIKNEILTEAHNSAFSIHPGGTKMYQDLKKHFWWRSMKKDIAEYV 1096

Query: 722  ------------------------------------------------------------ 781
                                                                        
Sbjct: 1097 SKCLVCQQVKAPRQKTAGLLQPLSIPEWKWENIAMDFIVGLPKTLKGYTVIWVVVDRLTK 1156

Query: 782  ------------------------------------------------------------ 841
                                                                        
Sbjct: 1157 SAHFLLGKATYTVDNWAQLYVKEIVRLHGVPVSIVSDRDPRFMSAFWRCLQRAMGSWDTK 1216

Query: 842  ------------------------------------------------------------ 901
                                                                        
Sbjct: 1217 LHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGERELIGPELVHVTNEAIQKIR 1276

Query: 902  --------------------------------------------------DALSRKTVHS 961
                                                              DALSRKTVHS
Sbjct: 1277 VRMRTTQSRQKSYADVRRRNLEFEEGDPVFLKLAPMKDIQYHPGKANVVVDALSRKTVHS 1336

Query: 962  SALITREVRVQREFERANIAVATEGVVAQLARLTVQPTLRQRIITSQREDPNLQKVLGQL 1021
            SALITREVRVQREFERANIAVAT+GV+AQLARLTVQPTLRQRII SQREDPNLQKVLGQL
Sbjct: 1337 SALITREVRVQREFERANIAVATKGVIAQLARLTVQPTLRQRIIASQREDPNLQKVLGQL 1396

Query: 1022 DESPVDGFSKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFFMHPRGTKMYQDLKQHF 1054
            D+SPVDGFSKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPF MHP GTKMYQDLKQHF
Sbjct: 1397 DKSPVDGFSKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPGGTKMYQDLKQHF 1456

[Close]

BLAST of CmoCh11G012340 vs. ExPASy TrEMBL
Match: A0A5A7SIJ5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003210 PE=4 SV=1)

HSP 1 Score: 1501.9 bits (3887), Expect = 0.0e+00
Identity = 748/1092 (68.50%), Postives = 876/1092 (80.22%), Query Frame = 0


Query: 3    FVVQAGFELEPLLHEMSVSTPAGVDLVSRDRVKDGQVIIGNQTLSIDLMVVNMTDFDAIL 62
            FV   G E+EPL   +SVSTP+G  L+S++++K  +V I N+ L + L+V++M DFD IL
Sbjct: 421  FVRHVGLEVEPLGSVLSVSTPSGEVLLSKEQIKACRVEITNRMLDVTLLVLDMQDFDVIL 480

Query: 63   GMDWLAENRASIDCRKKEVKFSPSTGPTFKFKGTNIGITPKVVSMMKAKRLVQQGGWAIL 122
            GMDWL+ N A+IDC  KEV F+P +G +FKF+G  +   PKV+S MKA +L+ QG W IL
Sbjct: 481  GMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKVISAMKASKLLSQGTWGIL 540

Query: 123  ACVVDVRGKEKTLVNVPIVNEFPNVFPDDLSGISPSRAVDFVIELEPRTGPISKAPYRMA 182
            A VVDVR  E +L + P+V E+P+VFPD+L G+ P R VDF IELEP T PIS+APYRMA
Sbjct: 541  ASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMA 600

Query: 183  PAELKELKAQLQDLLDKGFIQPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKRTVKNKYP 242
            PAELKELK QLQ+LLDKGFI+PSVSPWGAPVLFVKKKDGSMRLCIDYRELNK TVKN+YP
Sbjct: 601  PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYP 660

Query: 243  LPRIEDLFDQLREATIFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNA 302
            LPRI+DLFDQL+ AT+FSKIDLRSGYHQ+RI + D+PKTAFR+RYGHYEFVVMSFGLTNA
Sbjct: 661  LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNA 720

Query: 303  PTVFMELMNRVFKECLDMFVIVFIDDILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKC 362
            P VFM+LMNRVFK+ LD FVIVFIDDILIYS+T+ EHEEHL +VL TLR +KLYAKFSKC
Sbjct: 721  PAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKC 780

Query: 363  EFWLRQVSFLGHMVSKDEISVDPTKVEAITKWERPTT----------------------- 422
            EFWLR+V+FLGH+VS + +SVDP K+EA+T W RP+T                       
Sbjct: 781  EFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSR 840

Query: 423  --------------------------NLKERLVTTPVLIVLESSEGYEIYSDASMKGLGC 482
                                       LK++LVT PVL V + S  + IYSDAS KGLGC
Sbjct: 841  IASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGC 900

Query: 483  VLMQHGKVVAYASRQLKEYEKNYPTHDLELAAVVFALKIWRHYLYGEKTQIFTDHKSLKY 542
            VLMQ GKVVAYASRQLK +E+NYPTHDLELAAVVFALKIWRHYLYGEK QI+TDHKSLKY
Sbjct: 901  VLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKY 960

Query: 543  FFTQKELNMRQRRWLELVKDYDVDIQYHLGKANVVADALSRKTVHSSALITREVRVQREF 602
            FFTQKELNMRQRRWLELVKDYD +I YH GKANVVADALSRK  HS+ALIT++  + R+F
Sbjct: 961  FFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDF 1020

Query: 603  ERANIAVATEGVVAQLARLTVQPTLRQRIITSQREDPNLQKVLGQLDESPVDGFSKSSDE 662
            ERA IAV+   V AQLA+LTVQPTLRQ+II +Q +DP L +    ++    +GFS SSD+
Sbjct: 1021 ERAEIAVSVGEVTAQLAQLTVQPTLRQKIIAAQLDDPYLAEKRRVVETEQGEGFSISSDD 1080

Query: 663  GLLYQGRLCVPAIEDLRKEILMEAHNSPFFMHPRGTKMYQDLKQHFWWKSMKRDVAGFVS 722
            GL+++GRLCVP    ++ E+L EAH+SPF MHP  TKMYQDL+  +WW+ MKRDVA FVS
Sbjct: 1081 GLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRGMKRDVADFVS 1140

Query: 723  KCLVCQQVKAPRQKAAGLLQPLSIPEWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKS 782
            +CLVCQQVKAPRQ  AGLLQPLS+P WKWE+++MDFI GLPKT KGYTVIWVVVDRLTKS
Sbjct: 1141 RCLVCQQVKAPRQHPAGLLQPLSVPGWKWESVSMDFITGLPKTLKGYTVIWVVVDRLTKS 1200

Query: 783  AHFLPGKVTYTVDNWAQLYVKEIVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRLDFS 842
            AHF+PGK TYT   W QLY+ EIVRLHGVPVSIVSDRD RFTS FW+GLQ ALGTRLDFS
Sbjct: 1201 AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIVSDRDARFTSKFWKGLQIALGTRLDFS 1260

Query: 843  TAFHPQTDGQTERLNQILEDMLRACVLDFKESWDSKLHLMEFSYNNSFQATIGMAPFEAL 902
            TAFHPQTDGQTERLNQILEDMLRACVL+F  SWDS LHLMEF+YNNS+QATIGMAPFEAL
Sbjct: 1261 TAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEAL 1320

Query: 903  YGKRCRSPLRWDKVGERELVGPELVRLTNEAVQKIRARMRTAQSRQKSYADVRRKSLEFE 962
            YGK CRSP+ W +VGE+ ++GPELV+ TN A+QKIRARM TAQSRQKSYADVRRK LEFE
Sbjct: 1321 YGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFE 1380

Query: 963  VGDPVFLKVAPMKGVLRFGHKGKLSPKFIGPFEILERVGLVVYKLALPPALSGVHDVFHV 1022
            VGD VFLKVAPMKGVLRF  KGKLSP+F+GPFEILER+G V Y+LALPP+ + VHDVFH+
Sbjct: 1381 VGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHI 1440

Query: 1023 SMLRKYITDPIHVIDYKPLQLNEDLSYEEKPVRILAREVKTLRNRSIAFVKELLGRKTPR 1046
            SMLRKY+ DP HV+D++PLQ++E+LSYEE+PV +LAREVK LR+R I  VK +L +    
Sbjct: 1441 SMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVK-ILWQNHGV 1500

[Close]

BLAST of CmoCh11G012340 vs. ExPASy TrEMBL
Match: A0A5D3BTN0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001560 PE=4 SV=1)

HSP 1 Score: 1500.3 bits (3883), Expect = 0.0e+00
Identity = 747/1092 (68.41%), Postives = 875/1092 (80.13%), Query Frame = 0


Query: 3    FVVQAGFELEPLLHEMSVSTPAGVDLVSRDRVKDGQVIIGNQTLSIDLMVVNMTDFDAIL 62
            FV   G E+EPL   +SVSTP+G  L+S++++K  +V I N+ L + L+V++M DFD IL
Sbjct: 758  FVQHVGLEVEPLGSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVIL 817

Query: 63   GMDWLAENRASIDCRKKEVKFSPSTGPTFKFKGTNIGITPKVVSMMKAKRLVQQGGWAIL 122
            GMDWL+ N A+IDC  KEV F+P +  +FKF+G  +   PKV+S MKA +L+ QG W IL
Sbjct: 818  GMDWLSANHANIDCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGIL 877

Query: 123  ACVVDVRGKEKTLVNVPIVNEFPNVFPDDLSGISPSRAVDFVIELEPRTGPISKAPYRMA 182
            A VVDVR  E +L + P+V E+P+VFPD+L G+ P R VDF IELEP T PIS+APYRMA
Sbjct: 878  ASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMA 937

Query: 183  PAELKELKAQLQDLLDKGFIQPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKRTVKNKYP 242
            PAELKELK QLQ+LLDKGFI+PSVSPWGAPVLFVKKKDGSMRLCIDYRELNK TVKN+YP
Sbjct: 938  PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYP 997

Query: 243  LPRIEDLFDQLREATIFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNA 302
            LPRI+DLFDQL+ AT+FSKIDLRSGYHQ+RI + D+PKTAFR+RYGHYEFVVMSFGLTNA
Sbjct: 998  LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNA 1057

Query: 303  PTVFMELMNRVFKECLDMFVIVFIDDILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKC 362
            P VFM+LMNRVFK+ LD FVIVFIDDILIYS+T+ EHEEHL +VL TLR +KLYAKFSKC
Sbjct: 1058 PAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKC 1117

Query: 363  EFWLRQVSFLGHMVSKDEISVDPTKVEAITKWERPTT----------------------- 422
            EFWLR+V+FLGH+VS + +SVDP K+EA+T W RP+T                       
Sbjct: 1118 EFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSR 1177

Query: 423  --------------------------NLKERLVTTPVLIVLESSEGYEIYSDASMKGLGC 482
                                       LK++LVT PVL V + S  + IYSDAS KGLGC
Sbjct: 1178 IASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGC 1237

Query: 483  VLMQHGKVVAYASRQLKEYEKNYPTHDLELAAVVFALKIWRHYLYGEKTQIFTDHKSLKY 542
            VLMQ GKVVAYASRQLK +E+NYPTHDLELAAVVFALKIWRHYLYGEK QI+TDHKSLKY
Sbjct: 1238 VLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKY 1297

Query: 543  FFTQKELNMRQRRWLELVKDYDVDIQYHLGKANVVADALSRKTVHSSALITREVRVQREF 602
            FFTQKELNMRQRRWLELVKDYD +I YH GKANVVADALSRK  HS+ALIT++  + R+F
Sbjct: 1298 FFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDF 1357

Query: 603  ERANIAVATEGVVAQLARLTVQPTLRQRIITSQREDPNLQKVLGQLDESPVDGFSKSSDE 662
            ERA IAV+   V AQLA+LTVQPTLRQ+II +Q +DP L +    ++    +GFS SSD+
Sbjct: 1358 ERAEIAVSVGEVTAQLAQLTVQPTLRQKIIAAQLDDPYLAEKRRVVETEQGEGFSISSDD 1417

Query: 663  GLLYQGRLCVPAIEDLRKEILMEAHNSPFFMHPRGTKMYQDLKQHFWWKSMKRDVAGFVS 722
            GL+++GRLCVP    ++ E+L EAH+SPF MHP  TKMYQDL+  +WW+ MKRDVA FVS
Sbjct: 1418 GLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRGMKRDVADFVS 1477

Query: 723  KCLVCQQVKAPRQKAAGLLQPLSIPEWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKS 782
            +CLVCQQVKAPRQ  AGLLQPLS+P WKWE+++MDFI GLPKT KGYTVIWVVVDRLTKS
Sbjct: 1478 RCLVCQQVKAPRQHPAGLLQPLSVPGWKWESVSMDFITGLPKTLKGYTVIWVVVDRLTKS 1537

Query: 783  AHFLPGKVTYTVDNWAQLYVKEIVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRLDFS 842
            AHF+PGK TYT   W QLY+ EIVRLHGVPVSIVSDRD RFTS FW+GLQ ALGTRLDFS
Sbjct: 1538 AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIVSDRDARFTSKFWKGLQIALGTRLDFS 1597

Query: 843  TAFHPQTDGQTERLNQILEDMLRACVLDFKESWDSKLHLMEFSYNNSFQATIGMAPFEAL 902
            TAFHPQTDGQTERLNQILEDMLRACVL+F  SWDS LHLMEF+YNNS+QATIGMAPFEAL
Sbjct: 1598 TAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEAL 1657

Query: 903  YGKRCRSPLRWDKVGERELVGPELVRLTNEAVQKIRARMRTAQSRQKSYADVRRKSLEFE 962
            YGK CRSP+ W +VGE+ ++GPELV+ TN A+QKIRARM TAQSRQKSYADVRRK LEFE
Sbjct: 1658 YGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFE 1717

Query: 963  VGDPVFLKVAPMKGVLRFGHKGKLSPKFIGPFEILERVGLVVYKLALPPALSGVHDVFHV 1022
            VGD VFLKVAPMKGVLRF  KGKLSP+F+GPFEILER+G V Y+LALPP+ + VHDVFH+
Sbjct: 1718 VGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHI 1777

Query: 1023 SMLRKYITDPIHVIDYKPLQLNEDLSYEEKPVRILAREVKTLRNRSIAFVKELLGRKTPR 1046
            SMLRKY+ DP HV+D++PLQ++E+LSYEE+PV +LAREVK LR+R I  VK +L +    
Sbjct: 1778 SMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVK-ILWQNHGV 1837

[Close]

BLAST of CmoCh11G012340 vs. ExPASy TrEMBL
Match: A0A5D3C6W3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001930 PE=4 SV=1)

HSP 1 Score: 1500.3 bits (3883), Expect = 0.0e+00
Identity = 747/1092 (68.41%), Postives = 875/1092 (80.13%), Query Frame = 0


Query: 3    FVVQAGFELEPLLHEMSVSTPAGVDLVSRDRVKDGQVIIGNQTLSIDLMVVNMTDFDAIL 62
            FV   G E+EPL   +SVSTP+G  L+S++++K  +V I N+ L + L+V++M DFD IL
Sbjct: 376  FVQHVGLEVEPLGSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVIL 435

Query: 63   GMDWLAENRASIDCRKKEVKFSPSTGPTFKFKGTNIGITPKVVSMMKAKRLVQQGGWAIL 122
            GMDWL+ N A+IDC  KEV F+P +  +FKF+G  +   PKV+S MKA +L+ QG W IL
Sbjct: 436  GMDWLSANHANIDCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGIL 495

Query: 123  ACVVDVRGKEKTLVNVPIVNEFPNVFPDDLSGISPSRAVDFVIELEPRTGPISKAPYRMA 182
            A VVDVR  E +L + P+V E+P+VFPD+L G+ P R VDF IELEP T PIS+APYRMA
Sbjct: 496  ASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMA 555

Query: 183  PAELKELKAQLQDLLDKGFIQPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKRTVKNKYP 242
            PAELKELK QLQ+LLDKGFI+PSVSPWGAPVLFVKKKDGSMRLCIDYRELNK TVKN+YP
Sbjct: 556  PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYP 615

Query: 243  LPRIEDLFDQLREATIFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNA 302
            LPRI+DLFDQL+ AT+FSKIDLRSGYHQ+RI + D+PKTAFR+RYGHYEFVVMSFGLTNA
Sbjct: 616  LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNA 675

Query: 303  PTVFMELMNRVFKECLDMFVIVFIDDILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKC 362
            P VFM+LMNRVFK+ LD FVIVFIDDILIYS+T+ EHEEHL +VL TLR +KLYAKFSKC
Sbjct: 676  PAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKC 735

Query: 363  EFWLRQVSFLGHMVSKDEISVDPTKVEAITKWERPTT----------------------- 422
            EFWLR+V+FLGH+VS + +SVDP K+EA+T W RP+T                       
Sbjct: 736  EFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSR 795

Query: 423  --------------------------NLKERLVTTPVLIVLESSEGYEIYSDASMKGLGC 482
                                       LK++LVT PVL V + S  + IYSDAS KGLGC
Sbjct: 796  IASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGC 855

Query: 483  VLMQHGKVVAYASRQLKEYEKNYPTHDLELAAVVFALKIWRHYLYGEKTQIFTDHKSLKY 542
            VLMQ GKVVAYASRQLK +E+NYPTHDLELAAVVFALKIWRHYLYGEK QI+TDHKSLKY
Sbjct: 856  VLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKY 915

Query: 543  FFTQKELNMRQRRWLELVKDYDVDIQYHLGKANVVADALSRKTVHSSALITREVRVQREF 602
            FFTQKELNMRQRRWLELVKDYD +I YH GKANVVADALSRK  HS+ALIT++  + R+F
Sbjct: 916  FFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDF 975

Query: 603  ERANIAVATEGVVAQLARLTVQPTLRQRIITSQREDPNLQKVLGQLDESPVDGFSKSSDE 662
            ERA IAV+   V AQLA+LTVQPTLRQ+II +Q +DP L +    ++    +GFS SSD+
Sbjct: 976  ERAEIAVSVGEVTAQLAQLTVQPTLRQKIIAAQLDDPYLAEKRRVVETEQGEGFSISSDD 1035

Query: 663  GLLYQGRLCVPAIEDLRKEILMEAHNSPFFMHPRGTKMYQDLKQHFWWKSMKRDVAGFVS 722
            GL+++GRLCVP    ++ E+L EAH+SPF MHP  TKMYQDL+  +WW+ MKRDVA FVS
Sbjct: 1036 GLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRGMKRDVADFVS 1095

Query: 723  KCLVCQQVKAPRQKAAGLLQPLSIPEWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKS 782
            +CLVCQQVKAPRQ  AGLLQPLS+P WKWE+++MDFI GLPKT KGYTVIWVVVDRLTKS
Sbjct: 1096 RCLVCQQVKAPRQHPAGLLQPLSVPGWKWESVSMDFITGLPKTLKGYTVIWVVVDRLTKS 1155

Query: 783  AHFLPGKVTYTVDNWAQLYVKEIVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRLDFS 842
            AHF+PGK TYT   W QLY+ EIVRLHGVPVSIVSDRD RFTS FW+GLQ ALGTRLDFS
Sbjct: 1156 AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIVSDRDARFTSKFWKGLQIALGTRLDFS 1215

Query: 843  TAFHPQTDGQTERLNQILEDMLRACVLDFKESWDSKLHLMEFSYNNSFQATIGMAPFEAL 902
            TAFHPQTDGQTERLNQILEDMLRACVL+F  SWDS LHLMEF+YNNS+QATIGMAPFEAL
Sbjct: 1216 TAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEAL 1275

Query: 903  YGKRCRSPLRWDKVGERELVGPELVRLTNEAVQKIRARMRTAQSRQKSYADVRRKSLEFE 962
            YGK CRSP+ W +VGE+ ++GPELV+ TN A+QKIRARM TAQSRQKSYADVRRK LEFE
Sbjct: 1276 YGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFE 1335

Query: 963  VGDPVFLKVAPMKGVLRFGHKGKLSPKFIGPFEILERVGLVVYKLALPPALSGVHDVFHV 1022
            VGD VFLKVAPMKGVLRF  KGKLSP+F+GPFEILER+G V Y+LALPP+ + VHDVFH+
Sbjct: 1336 VGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHI 1395

Query: 1023 SMLRKYITDPIHVIDYKPLQLNEDLSYEEKPVRILAREVKTLRNRSIAFVKELLGRKTPR 1046
            SMLRKY+ DP HV+D++PLQ++E+LSYEE+PV +LAREVK LR+R I  VK +L +    
Sbjct: 1396 SMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVK-ILWQNHGV 1455

[Close]

BLAST of CmoCh11G012340 vs. ExPASy TrEMBL
Match: A0A5A7V2A0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001000 PE=4 SV=1)

HSP 1 Score: 1500.3 bits (3883), Expect = 0.0e+00
Identity = 747/1092 (68.41%), Postives = 875/1092 (80.13%), Query Frame = 0


Query: 3    FVVQAGFELEPLLHEMSVSTPAGVDLVSRDRVKDGQVIIGNQTLSIDLMVVNMTDFDAIL 62
            FV   G E+EPL   +SVSTP+G  L+S++++K  +V I N+ L + L+V++M DFD IL
Sbjct: 804  FVQHVGLEVEPLGSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVIL 863

Query: 63   GMDWLAENRASIDCRKKEVKFSPSTGPTFKFKGTNIGITPKVVSMMKAKRLVQQGGWAIL 122
            GMDWL+ N A+IDC  KEV F+P +  +FKF+G  +   PKV+S MKA +L+ QG W IL
Sbjct: 864  GMDWLSANHANIDCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGIL 923

Query: 123  ACVVDVRGKEKTLVNVPIVNEFPNVFPDDLSGISPSRAVDFVIELEPRTGPISKAPYRMA 182
            A VVDVR  E +L + P+V E+P+VFPD+L G+ P R VDF IELEP T PIS+APYRMA
Sbjct: 924  ASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMA 983

Query: 183  PAELKELKAQLQDLLDKGFIQPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKRTVKNKYP 242
            PAELKELK QLQ+LLDKGFI+PSVSPWGAPVLFVKKKDGSMRLCIDYRELNK TVKN+YP
Sbjct: 984  PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYP 1043

Query: 243  LPRIEDLFDQLREATIFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNA 302
            LPRI+DLFDQL+ AT+FSKIDLRSGYHQ+RI + D+PKTAFR+RYGHYEFVVMSFGLTNA
Sbjct: 1044 LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNA 1103

Query: 303  PTVFMELMNRVFKECLDMFVIVFIDDILIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKC 362
            P VFM+LMNRVFK+ LD FVIVFIDDILIYS+T+ EHEEHL +VL TLR +KLYAKFSKC
Sbjct: 1104 PAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKC 1163

Query: 363  EFWLRQVSFLGHMVSKDEISVDPTKVEAITKWERPTT----------------------- 422
            EFWLR+V+FLGH+VS + +SVDP K+EA+T W RP+T                       
Sbjct: 1164 EFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSR 1223

Query: 423  --------------------------NLKERLVTTPVLIVLESSEGYEIYSDASMKGLGC 482
                                       LK++LVT PVL V + S  + IYSDAS KGLGC
Sbjct: 1224 IASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGC 1283

Query: 483  VLMQHGKVVAYASRQLKEYEKNYPTHDLELAAVVFALKIWRHYLYGEKTQIFTDHKSLKY 542
            VLMQ GKVVAYASRQLK +E+NYPTHDLELAAVVFALKIWRHYLYGEK QI+TDHKSLKY
Sbjct: 1284 VLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKY 1343

Query: 543  FFTQKELNMRQRRWLELVKDYDVDIQYHLGKANVVADALSRKTVHSSALITREVRVQREF 602
            FFTQKELNMRQRRWLELVKDYD +I YH GKANVVADALSRK  HS+ALIT++  + R+F
Sbjct: 1344 FFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDF 1403

Query: 603  ERANIAVATEGVVAQLARLTVQPTLRQRIITSQREDPNLQKVLGQLDESPVDGFSKSSDE 662
            ERA IAV+   V AQLA+LTVQPTLRQ+II +Q +DP L +    ++    +GFS SSD+
Sbjct: 1404 ERAEIAVSVGEVTAQLAQLTVQPTLRQKIIAAQLDDPYLAEKRRVVETEQGEGFSISSDD 1463

Query: 663  GLLYQGRLCVPAIEDLRKEILMEAHNSPFFMHPRGTKMYQDLKQHFWWKSMKRDVAGFVS 722
            GL+++GRLCVP    ++ E+L EAH+SPF MHP  TKMYQDL+  +WW+ MKRDVA FVS
Sbjct: 1464 GLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRGMKRDVADFVS 1523

Query: 723  KCLVCQQVKAPRQKAAGLLQPLSIPEWKWENIAMDFIVGLPKTPKGYTVIWVVVDRLTKS 782
            +CLVCQQVKAPRQ  AGLLQPLS+P WKWE+++MDFI GLPKT KGYTVIWVVVDRLTKS
Sbjct: 1524 RCLVCQQVKAPRQHPAGLLQPLSVPGWKWESVSMDFITGLPKTLKGYTVIWVVVDRLTKS 1583

Query: 783  AHFLPGKVTYTVDNWAQLYVKEIVRLHGVPVSIVSDRDPRFTSAFWRGLQKALGTRLDFS 842
            AHF+PGK TYT   W QLY+ EIVRLHGVPVSIVSDRD RFTS FW+GLQ ALGTRLDFS
Sbjct: 1584 AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIVSDRDARFTSKFWKGLQIALGTRLDFS 1643

Query: 843  TAFHPQTDGQTERLNQILEDMLRACVLDFKESWDSKLHLMEFSYNNSFQATIGMAPFEAL 902
            TAFHPQTDGQTERLNQILEDMLRACVL+F  SWDS LHLMEF+YNNS+QATIGMAPFEAL
Sbjct: 1644 TAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEAL 1703

Query: 903  YGKRCRSPLRWDKVGERELVGPELVRLTNEAVQKIRARMRTAQSRQKSYADVRRKSLEFE 962
            YGK CRSP+ W +VGE+ ++GPELV+ TN A+QKIRARM TAQSRQKSYADVRRK LEFE
Sbjct: 1704 YGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFE 1763

Query: 963  VGDPVFLKVAPMKGVLRFGHKGKLSPKFIGPFEILERVGLVVYKLALPPALSGVHDVFHV 1022
            VGD VFLKVAPMKGVLRF  KGKLSP+F+GPFEILER+G V Y+LALPP+ + VHDVFH+
Sbjct: 1764 VGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHI 1823

Query: 1023 SMLRKYITDPIHVIDYKPLQLNEDLSYEEKPVRILAREVKTLRNRSIAFVKELLGRKTPR 1046
            SMLRKY+ DP HV+D++PLQ++E+LSYEE+PV +LAREVK LR+R I  VK +L +    
Sbjct: 1824 SMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVK-ILWQNHGV 1883

[Close]

BLAST of CmoCh11G012340 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 7.1e-06
Identity = 26/65 (40.00%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 342 HLRKVLTTLREHKLYAKFSKCEFWLRQVSFLG--HMVSKDEISVDPTKVEAITKWERP-- 401
           HL  VL    +H+ YA   KC F   Q+++LG  H++S + +S DP K+EA+  W  P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 402 TTNLK 403
           TT L+
Sbjct: 63  TTELR 67

The following BLAST results are available for this feature:

BLAST of CmoCh11G012340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.4e-118	32.34	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.3e-116	31.82	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	2.5e-112	29.20	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.5e-112	29.20	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	2.5e-112	29.20	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmoCh11G012340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EYH9	0.0e+00	57.46	Reverse transcriptase OS=Cucurbita moschata OX=3662 GN=LOC111440131 PE=4 SV=1	[more]
A0A5A7SIJ5	0.0e+00	68.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34...	[more]
A0A5D3BTN0	0.0e+00	68.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5D3C6W3	0.0e+00	68.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13...	[more]
A0A5A7V2A0	0.0e+00	68.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]

BLAST of CmoCh11G012340 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	7.1e-06	40.00	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 179..199
None	No IPR available	PFAM	PF08284	RVP_2	coord: 2..86 e-value: 1.8E-15 score: 57.0
None	No IPR available	GENE3D	3.10.20.370		coord: 417..485 e-value: 5.2E-6 score: 28.3
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 162..301 e-value: 2.6E-92 score: 309.9
None	No IPR available	GENE3D	1.10.340.70		coord: 607..682 e-value: 2.3E-17 score: 65.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1271..1291
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1042..1062
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1086..1100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1030..1104
None	No IPR available	PANTHER	PTHR34072:SF9	ENZYMATIC POLYPROTEIN-RELATED	coord: 140..399 coord: 395..951
None	No IPR available	PANTHER	PTHR34072	ENZYMATIC POLYPROTEIN-RELATED	coord: 140..399 coord: 395..951
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 3..68 e-value: 1.28814E-6 score: 45.7904
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 421..535 e-value: 1.33759E-55 score: 186.544
None	No IPR available	CDD	cd01647	RT_LTR	coord: 200..376 e-value: 2.78843E-90 score: 287.184
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 419..514 e-value: 8.7E-32 score: 109.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 692..897 e-value: 1.9E-45 score: 156.6
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 628..683 e-value: 5.2E-17 score: 61.6
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 4..93 e-value: 1.8E-12 score: 49.1
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 216..375 e-value: 1.4E-29 score: 103.2
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 197..376 score: 11.724978
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 241..376 e-value: 2.6E-92 score: 309.9
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 694..857 score: 20.010164
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 695..853
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 140..520

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012340.1	CmoCh11G012340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008194	UDP-glycosyltransferase activity
molecular_function	GO:0008270	zinc ion binding