CmoCh11G012290 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G012290
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase
Location	Cmo_Chr11: 7444177 .. 7448925 (+)
RNA-Seq Expression	CmoCh11G012290
Synteny	CmoCh11G012290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATCCAGACGACAATACTAACATTACTGATGCACGATTGAGAGAAGCACAACAACGAACCATGGAAAGACTAATTCGAGGAATAGAAGAGTTGACTGATCGAATAGGAAGATTGGAGATTCAAAATCAAGCACGACAGAGGATTCCACAACCTACGCCCTCAACCGATACATATGAAGGCGACAATTCTGATCACCACGAGGATAATCCACATGCGGTTGGTCCTGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGTATCATAATTTACAACAACGAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAAATTAAAACTTCCCAAGTTTTATGGCAAAACCGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTCAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCAACGGGACATGGCGCAAAAGCTTCAAGCGTTGAAACAAGGACGCAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATCCAACGAAGGTCTCAACGGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAAGGATAGTAAGAACATTGATTATAAGCATAGAAATCAAGAGATTAATGAGAAGCCTCAAGCTAAATTTGAGAAAGGGGAGAGTTCTAGAACAGGGAAAGAAAAAGTAGAAAATAATGTTCGAAATAGGGATTTAAAGTGTTGGAGATGTCAAGGGGTAGGACACTATAGTAGAGATTGCCCAAATGCAAGAATTATGACCATCAAGGAGGGAGAAATTGTTACGGATGACGAGGCACATGACGACATAAATGAGGAAACTGATGAGAGTGAGGAGTTTAGTGAAGAGGACCCTACACATATATCTTTGGTTACTCGACGAGCTCTAAACACCCACATTAAGGAGGACGGCCTAGACCAAAGGGAGAACTTGTTTCAAACTCGGTGTCTTGTTCAATCTGTACCTTGTAGTGTTGTCATTGATAGCGGTAGTTGCACCAATGTTGTGAGTTCCATTCTGGTCAAAAGACTTAATTTAAAGACACAACCACATCCAAGACCCTACAAGCTTCAATGGTTGAATGATTGTGGGGAAGTACGGGTAACTCAACAAACTCTTGTTTCTTTTACTATTGGAAAATATGTTGATGATGTTTTATGTGATGTTGTATCCATGCATGTTGGAGATTTACTACTGGGGAGGCCATGGCAATTTGATCGTCGGGTAATGTATGATGGGTATGCAAATCGATACTCCTTTACTCACAACGGTAGAAAAACTACTCTTATCCCATTGTCTCCAAAAGATGTATTTATTGATCATTGCAAACTTGAAAAGAAAAGGCAAGAGGCTGATGCAAAAGCAGAGATTGAAAAAGAATCAAGTGAAAAAAAGAGCTTGAGTGAAAAGCAAGAGAGTAACACTCAGCCTAGAGAAAAAAAAGAGAGAAAAGCCAAATCAGTAAGCTTGTATGTTAGATCAAGTGAGGCTAGGAATGTTTTGCTCTCTAACCAGACTATTCTTGTACTTATGTGCAAGGGGTCTTGTTACTTTACTAACATGCTTAACCCTTCTTTGCCTAGTGATTTTGTTGTGCTTTTGCAAGAGTTTGAAGATTTATTTTCCGAGGAGATGCCTAGTAGTTTGCCACCACTTAGAGGGATTGAACACAAGATTGACTTCATTCCTGGCTCGCCCATTCCAAACCGACCAGCTTATAGGACTAATCCAAAGGAGGCTGAAGAGATACAAAGACAAGTAAGTGAACTCCTTGCTAAAGGGTATGTACGTGAAAGTTTGAGTCCTTGTTCTGTTCCAGTTATTCTTGTACCTAAGAAAGATGGTTCTTGGCGTATGTGTGTTGATTGTAGGGCTATAAACAAGATAACTATAAAGTATAGGCATCCAATTCCCAGATTAGATGATATGCTTGATGAATTGCATGGATGTAGTCTTTTTACTAAGATTGATTTAAAATCGGGTTATCATCAAATTCGCATGCATATTGGGGATGAGTGGAAAACAGCTTTTAACACCAAGTATGGTCTTTATGAATGGTTGGTTATGCCTTTTGGATTAACTAATGCACCTAGTACATTCATGAGACTAATGAATCATGTCTTACGAGAATACTTAGGTAAGTTTGTGGTTGTTTATTTTGATGACATCCTTGTTTACTCTAAATCTTTAGATGATCATATTACCCATGTACGCAATGTTTTGACTACTTTAAGAAACGAATGTTTGTATGTAAATTTAAAGAAATGTAGCTTTTGCATGGAAAAAGTTAACTTTCTTGGGTTTGTAGTTTCATCTAATGGTGTTGAGGTTGATGAGGAGAAAGTGAAGGCTATAAAAGATTGGCCTACTCCGAAAAATGTAAGTGAGGTAAGAAGTTTTCATGGTCTTGCAAGTTTCTACCGTAGGTTCATTAAAAATTTTAGTACAATTGCTTCACCCTTGAATGAACTTGTTAAGAAAAATGTATCCTTTATATGGGAAAAAGATCAAGAACTTGCTTTTAATACTTTGAAAGAAAAATTGAGTTCTGCTCCCTTGCTTGCATTACCTAATTTTGAGTCTACTTTTGAAATTGAATGTGATGCTAGTGGAGTAGGGATAGGTGCTGTATTGATGCAAAATCAAAGACCTTTAATGTTCTTTAGTGAGAAGTTGACTGGTGCATCTTTGAGGTATCCAACTTATGACAAAGAGCTTTATGCTTTGGTTCGTGCATTGCAAACCTGGCAACATTATCTTTGGCCTAAGGAGTTCATTATTCATACGGATCATGAAAGTTTAAAGCATTTGAGAGTACAAAATAAACTCAACAGACGACATGCTAAGTGGTTAGAATTTATTGAAACATTCCCGTATGTCATAAAATATAAACAAGGAAAGGAGAACATTGTAGCAGATGCTTTATCACGAAGGTATGTCCTCCTCAATACTTTGAATGCTAGGTTGTTGAGTTTTGAACACATAAAGGATTTGTATCAACATGACATGTTCTTTGCTCCTTTTGTTGAATCTTGTGAAAAAGGACTCATTGTGGATAATTACTTGTTGTTAGATGGATTTTTGTTCCGAAAAGGCAAACTTTGCATACCATCTTGTTCCATCCGTGAGCTACTTGTGAGGGAAGCTCATGGAGGTGGTTTAATGGCACACCATGGAGTTTCTAAAACTTATGATATGCTCTCTGAACATTTTTTTTGGCCTAAAATGAGACATGATGTTCATAAAGTTTGTGCTCGTTGCATAGCATGTAAACAAGCTAAGTCTAGGCTTCAACCACATGGTTTATACTCCCCATTACCAGTTCCTAATGGTCCATGGATTGATATATCAATGGATTTTGTTTTAGGTTTACCTAGGACTAGGAAAGGTTATGATAGCATTTTTGTTGTGGTTGATCGATTTAGTAAAATGGCTCATTTTATTCCTTGTCACAAAACTGATGATGCAAAACATATTGCAGACCTGTTCTTTAGGGAAGTTGTACGATTGCATGGCATTCCTAAAAGCATCGTTAGTGATCGTGATGTAAAATTTTTAAGCCACTTTTGGCGTGTTTTATGGGGTAAGTTGGGAACTAAGCTAGTATATTCAACTACTTGTCATCCTCAAACGGATGGACAAACTGAAGTTGTTAACAGAACCATGACTGCTATGCTTAGGGCTATTATTGATAAGAATCTTAAGACTTGGGAGGATTGTTTGCCATTTATAGAATTTGCATATAATAGGGTTGTTCATAGCACTACTAAATGCACACCTTTTGAAATTGTTTATGGCTTTAATCCTTTAACCCCTATTGACTTGTTACCCATACCGTCAAAAGAGTTTGTGAATTTTGATGCAAATGCCAAGGTTGAGTTTGTTCATAAACTGCACAAGCAAGTGAAAGAACAAATTGAGAAACAAAATTCCAAGGTTGCCACCCGAATTAATAAAGGACGTAAGATTGTCATCTTCAAGCCAGGAGATTGGGTTTGGGTGCATTTCCGAAAAGAAAGATTTCCTACTCAAAGAAAATCTAAGCTTTTACCACGAGGAGATGGACCTTTTCAAGTTCTTGAGCGCATCAACGACAATGCTTATAAAATTGATTTACCAGGTAAGTACGGTGTTAGTGCAACTTTTAATGTTGTTGATTTGAGCCCTTTTGATGTAGGTGATGGCTTGGATTCGAGGACGAATCCTTCTCAAGAGGGGGAGAATGATATGAACCACGACCAAGGAATTTCCATACCTCAAGGTCCAATTACAAGGACGAGAGCCAAGAAGCTACAACAAACTTTATACAGTTATATTCAAGCTATGGTGAGCTCATCAAAGGAAATTCTAGAAGACGCTGGAGACCTCCCTTATATGTTGTGCAAAGTTGAGGTTCAAGAAAGAGATGAATTAAATGCACTTTAA

mRNA sequence

ATGGAAAATCCAGACGACAATACTAACATTACTGATGCACGATTGAGAGAAGCACAACAACGAACCATGGAAAGACTAATTCGAGGAATAGAAGAGTTGACTGATCGAATAGGAAGATTGGAGATTCAAAATCAAGCACGACAGAGGATTCCACAACCTACGCCCTCAACCGATACATATGAAGGCGACAATTCTGATCACCACGAGGATAATCCACATGCGGTTGGTCCTGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGTATCATAATTTACAACAACGAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAAATTAAAACTTCCCAAGTTTTATGGCAAAACCGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTCAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCAACGGGACATGGCGCAAAAGCTTCAAGCGTTGAAACAAGGACGCAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATCCAACGAAGGTCTCAACGGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAAGGATAGTAAGAACATTGATTATAAGCATAGAAATCAAGAGATTAATGAGAAGCCTCAAGCTAAATTTGAGAAAGGGGAGAGTTCTAGAACAGGGAAAGAAAAAGTAGAAAATAATGTTCGAAATAGGGATTTAAAGTGTTGGAGATGTCAAGGGGTAGGACACTATAGTAGAGATTGCCCAAATGCAAGAATTATGACCATCAAGGAGGGAGAAATTGTTACGGATGACGAGGCACATGACGACATAAATGAGGAAACTGATGAGAGTGAGGAGTTTAGTGAAGAGGACCCTACACATATATCTTTGGTTACTCGACGAGCTCTAAACACCCACATTAAGGAGGACGGCCTAGACCAAAGGGAGAACTTGTTTCAAACTCGGTGTCTTGTTCAATCTGTACCTTGTAGTGTTGTCATTGATAGCGGTAGTTGCACCAATGTTGTGAGTTCCATTCTGGTCAAAAGACTTAATTTAAAGACACAACCACATCCAAGACCCTACAAGCTTCAATGGTTGAATGATTGTGGGGAAGTACGGGTAACTCAACAAACTCTTGTTTCTTTTACTATTGGAAAATATGTTGATGATGTTTTATGTGATGTTGTATCCATGCATGTTGGAGATTTACTACTGGGGAGGCCATGGCAATTTGATCGTCGGGTAATGTATGATGGGTATGCAAATCGATACTCCTTTACTCACAACGGTAGAAAAACTACTCTTATCCCATTGTCTCCAAAAGATGTATTTATTGATCATTGCAAACTTGAAAAGAAAAGGCAAGAGGCTGATGCAAAAGCAGAGATTGAAAAAGAATCAAGTGAAAAAAAGAGCTTGAGTGAAAAGCAAGAGAGTAACACTCAGCCTAGAGAAAAAAAAGAGAGAAAAGCCAAATCAGTAAGCTTGTATGTTAGATCAAGTGAGGCTAGGAATGTTTTGCTCTCTAACCAGACTATTCTTGTACTTATGTGCAAGGGGTCTTGTTACTTTACTAACATGCTTAACCCTTCTTTGCCTAGTGATTTTGTTGTGCTTTTGCAAGAGTTTGAAGATTTATTTTCCGAGGAGATGCCTAGTAGTTTGCCACCACTTAGAGGGATTGAACACAAGATTGACTTCATTCCTGGCTCGCCCATTCCAAACCGACCAGCTTATAGGACTAATCCAAAGGAGGCTGAAGAGATACAAAGACAAGTAAGTGAACTCCTTGCTAAAGGGTATGTACGTGAAAGTTTGAGTCCTTGTTCTGTTCCAGTTATTCTTGTACCTAAGAAAGATGGTTCTTGGCGTATGTGTGTTGATTGTAGGGCTATAAACAAGATAACTATAAAGTATAGGCATCCAATTCCCAGATTAGATGATATGCTTGATGAATTGCATGGATGTAGTCTTTTTACTAAGATTGATTTAAAATCGGGTTATCATCAAATTCGCATGCATATTGGGGATGAGTGGAAAACAGCTTTTAACACCAAGTATGGTCTTTATGAATGGTTGGTTATGCCTTTTGGATTAACTAATGCACCTAGTACATTCATGAGACTAATGAATCATGTCTTACGAGAATACTTAGGTAAGTTTGTGGTTGTTTATTTTGATGACATCCTTGTTTACTCTAAATCTTTAGATGATCATATTACCCATGTACGCAATGTTTTGACTACTTTAAGAAACGAATGTTTGTATGTAAATTTAAAGAAATGTAGCTTTTGCATGGAAAAAGTTAACTTTCTTGGGTTTGTAGTTTCATCTAATGGTGTTGAGGTTGATGAGGAGAAAGTGAAGGCTATAAAAGATTGGCCTACTCCGAAAAATGTAAGTGAGGTAAGAAGTTTTCATGGTCTTGCAAGTTTCTACCGTAGGTTCATTAAAAATTTTAGTACAATTGCTTCACCCTTGAATGAACTTGTTAAGAAAAATGTATCCTTTATATGGGAAAAAGATCAAGAACTTGCTTTTAATACTTTGAAAGAAAAATTGAGTTCTGCTCCCTTGCTTGCATTACCTAATTTTGAGTCTACTTTTGAAATTGAATGTGATGCTAGTGGAGTAGGGATAGGTGCTGTATTGATGCAAAATCAAAGACCTTTAATGTTCTTTAGTGAGAAGTTGACTGGTGCATCTTTGAGGTATCCAACTTATGACAAAGAGCTTTATGCTTTGGTTCGTGCATTGCAAACCTGGCAACATTATCTTTGGCCTAAGGAGTTCATTATTCATACGGATCATGAAAGTTTAAAGCATTTGAGAGTACAAAATAAACTCAACAGACGACATGCTAAGTGGTTAGAATTTATTGAAACATTCCCGTATGTCATAAAATATAAACAAGGAAAGGAGAACATTGTAGCAGATGCTTTATCACGAAGGTATGTCCTCCTCAATACTTTGAATGCTAGGTTGTTGAGTTTTGAACACATAAAGGATTTGTATCAACATGACATGTTCTTTGCTCCTTTTGTTGAATCTTGTGAAAAAGGACTCATTGTGGATAATTACTTGTTGTTAGATGGATTTTTGTTCCGAAAAGGCAAACTTTGCATACCATCTTGTTCCATCCGTGAGCTACTTGTGAGGGAAGCTCATGGAGGTGGTTTAATGGCACACCATGGAGTTTCTAAAACTTATGATATGCTCTCTGAACATTTTTTTTGGCCTAAAATGAGACATGATGTTCATAAAGTTTGTGCTCGTTGCATAGCATGTAAACAAGCTAAGTCTAGGCTTCAACCACATGGTTTATACTCCCCATTACCAGTTCCTAATGGTCCATGGATTGATATATCAATGGATTTTGTTTTAGGTTTACCTAGGACTAGGAAAGGTTATGATAGCATTTTTGTTGTGGTTGATCGATTTAGTAAAATGGCTCATTTTATTCCTTGTCACAAAACTGATGATGCAAAACATATTGCAGACCTGTTCTTTAGGGAAGTTGTACGATTGCATGGCATTCCTAAAAGCATCGTTAGTGATCGTGATGTAAAATTTTTAAGCCACTTTTGGCGTGTTTTATGGGGTAAGTTGGGAACTAAGCTAGTATATTCAACTACTTGTCATCCTCAAACGGATGGACAAACTGAAGTTGTTAACAGAACCATGACTGCTATGCTTAGGGCTATTATTGATAAGAATCTTAAGACTTGGGAGGATTGTTTGCCATTTATAGAATTTGCATATAATAGGGTTGTTCATAGCACTACTAAATGCACACCTTTTGAAATTGTTTATGGCTTTAATCCTTTAACCCCTATTGACTTGTTACCCATACCGTCAAAAGAGTTTGTGAATTTTGATGCAAATGCCAAGGTTGAGTTTGTTCATAAACTGCACAAGCAAGTGAAAGAACAAATTGAGAAACAAAATTCCAAGGTTGCCACCCGAATTAATAAAGGACGTAAGATTGTCATCTTCAAGCCAGGAGATTGGGTTTGGGTGCATTTCCGAAAAGAAAGATTTCCTACTCAAAGAAAATCTAAGCTTTTACCACGAGGAGATGGACCTTTTCAAGTTCTTGAGCGCATCAACGACAATGCTTATAAAATTGATTTACCAGGTAAGTACGGTGTTAGTGCAACTTTTAATGTTGTTGATTTGAGCCCTTTTGATGTAGGTGATGGCTTGGATTCGAGGACGAATCCTTCTCAAGAGGGGGAGAATGATATGAACCACGACCAAGGAATTTCCATACCTCAAGGTCCAATTACAAGGACGAGAGCCAAGAAGCTACAACAAACTTTATACAGTTATATTCAAGCTATGGTGAGCTCATCAAAGGAAATTCTAGAAGACGCTGGAGACCTCCCTTATATGTTGTGCAAAGTTGAGGTTCAAGAAAGAGATGAATTAAATGCACTTTAA

Coding sequence (CDS)

ATGGAAAATCCAGACGACAATACTAACATTACTGATGCACGATTGAGAGAAGCACAACAACGAACCATGGAAAGACTAATTCGAGGAATAGAAGAGTTGACTGATCGAATAGGAAGATTGGAGATTCAAAATCAAGCACGACAGAGGATTCCACAACCTACGCCCTCAACCGATACATATGAAGGCGACAATTCTGATCACCACGAGGATAATCCACATGCGGTTGGTCCTGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGTATCATAATTTACAACAACGAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAAATTAAAACTTCCCAAGTTTTATGGCAAAACCGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTCAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCAACGGGACATGGCGCAAAAGCTTCAAGCGTTGAAACAAGGACGCAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATCCAACGAAGGTCTCAACGGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAAGGATAGTAAGAACATTGATTATAAGCATAGAAATCAAGAGATTAATGAGAAGCCTCAAGCTAAATTTGAGAAAGGGGAGAGTTCTAGAACAGGGAAAGAAAAAGTAGAAAATAATGTTCGAAATAGGGATTTAAAGTGTTGGAGATGTCAAGGGGTAGGACACTATAGTAGAGATTGCCCAAATGCAAGAATTATGACCATCAAGGAGGGAGAAATTGTTACGGATGACGAGGCACATGACGACATAAATGAGGAAACTGATGAGAGTGAGGAGTTTAGTGAAGAGGACCCTACACATATATCTTTGGTTACTCGACGAGCTCTAAACACCCACATTAAGGAGGACGGCCTAGACCAAAGGGAGAACTTGTTTCAAACTCGGTGTCTTGTTCAATCTGTACCTTGTAGTGTTGTCATTGATAGCGGTAGTTGCACCAATGTTGTGAGTTCCATTCTGGTCAAAAGACTTAATTTAAAGACACAACCACATCCAAGACCCTACAAGCTTCAATGGTTGAATGATTGTGGGGAAGTACGGGTAACTCAACAAACTCTTGTTTCTTTTACTATTGGAAAATATGTTGATGATGTTTTATGTGATGTTGTATCCATGCATGTTGGAGATTTACTACTGGGGAGGCCATGGCAATTTGATCGTCGGGTAATGTATGATGGGTATGCAAATCGATACTCCTTTACTCACAACGGTAGAAAAACTACTCTTATCCCATTGTCTCCAAAAGATGTATTTATTGATCATTGCAAACTTGAAAAGAAAAGGCAAGAGGCTGATGCAAAAGCAGAGATTGAAAAAGAATCAAGTGAAAAAAAGAGCTTGAGTGAAAAGCAAGAGAGTAACACTCAGCCTAGAGAAAAAAAAGAGAGAAAAGCCAAATCAGTAAGCTTGTATGTTAGATCAAGTGAGGCTAGGAATGTTTTGCTCTCTAACCAGACTATTCTTGTACTTATGTGCAAGGGGTCTTGTTACTTTACTAACATGCTTAACCCTTCTTTGCCTAGTGATTTTGTTGTGCTTTTGCAAGAGTTTGAAGATTTATTTTCCGAGGAGATGCCTAGTAGTTTGCCACCACTTAGAGGGATTGAACACAAGATTGACTTCATTCCTGGCTCGCCCATTCCAAACCGACCAGCTTATAGGACTAATCCAAAGGAGGCTGAAGAGATACAAAGACAAGTAAGTGAACTCCTTGCTAAAGGGTATGTACGTGAAAGTTTGAGTCCTTGTTCTGTTCCAGTTATTCTTGTACCTAAGAAAGATGGTTCTTGGCGTATGTGTGTTGATTGTAGGGCTATAAACAAGATAACTATAAAGTATAGGCATCCAATTCCCAGATTAGATGATATGCTTGATGAATTGCATGGATGTAGTCTTTTTACTAAGATTGATTTAAAATCGGGTTATCATCAAATTCGCATGCATATTGGGGATGAGTGGAAAACAGCTTTTAACACCAAGTATGGTCTTTATGAATGGTTGGTTATGCCTTTTGGATTAACTAATGCACCTAGTACATTCATGAGACTAATGAATCATGTCTTACGAGAATACTTAGGTAAGTTTGTGGTTGTTTATTTTGATGACATCCTTGTTTACTCTAAATCTTTAGATGATCATATTACCCATGTACGCAATGTTTTGACTACTTTAAGAAACGAATGTTTGTATGTAAATTTAAAGAAATGTAGCTTTTGCATGGAAAAAGTTAACTTTCTTGGGTTTGTAGTTTCATCTAATGGTGTTGAGGTTGATGAGGAGAAAGTGAAGGCTATAAAAGATTGGCCTACTCCGAAAAATGTAAGTGAGGTAAGAAGTTTTCATGGTCTTGCAAGTTTCTACCGTAGGTTCATTAAAAATTTTAGTACAATTGCTTCACCCTTGAATGAACTTGTTAAGAAAAATGTATCCTTTATATGGGAAAAAGATCAAGAACTTGCTTTTAATACTTTGAAAGAAAAATTGAGTTCTGCTCCCTTGCTTGCATTACCTAATTTTGAGTCTACTTTTGAAATTGAATGTGATGCTAGTGGAGTAGGGATAGGTGCTGTATTGATGCAAAATCAAAGACCTTTAATGTTCTTTAGTGAGAAGTTGACTGGTGCATCTTTGAGGTATCCAACTTATGACAAAGAGCTTTATGCTTTGGTTCGTGCATTGCAAACCTGGCAACATTATCTTTGGCCTAAGGAGTTCATTATTCATACGGATCATGAAAGTTTAAAGCATTTGAGAGTACAAAATAAACTCAACAGACGACATGCTAAGTGGTTAGAATTTATTGAAACATTCCCGTATGTCATAAAATATAAACAAGGAAAGGAGAACATTGTAGCAGATGCTTTATCACGAAGGTATGTCCTCCTCAATACTTTGAATGCTAGGTTGTTGAGTTTTGAACACATAAAGGATTTGTATCAACATGACATGTTCTTTGCTCCTTTTGTTGAATCTTGTGAAAAAGGACTCATTGTGGATAATTACTTGTTGTTAGATGGATTTTTGTTCCGAAAAGGCAAACTTTGCATACCATCTTGTTCCATCCGTGAGCTACTTGTGAGGGAAGCTCATGGAGGTGGTTTAATGGCACACCATGGAGTTTCTAAAACTTATGATATGCTCTCTGAACATTTTTTTTGGCCTAAAATGAGACATGATGTTCATAAAGTTTGTGCTCGTTGCATAGCATGTAAACAAGCTAAGTCTAGGCTTCAACCACATGGTTTATACTCCCCATTACCAGTTCCTAATGGTCCATGGATTGATATATCAATGGATTTTGTTTTAGGTTTACCTAGGACTAGGAAAGGTTATGATAGCATTTTTGTTGTGGTTGATCGATTTAGTAAAATGGCTCATTTTATTCCTTGTCACAAAACTGATGATGCAAAACATATTGCAGACCTGTTCTTTAGGGAAGTTGTACGATTGCATGGCATTCCTAAAAGCATCGTTAGTGATCGTGATGTAAAATTTTTAAGCCACTTTTGGCGTGTTTTATGGGGTAAGTTGGGAACTAAGCTAGTATATTCAACTACTTGTCATCCTCAAACGGATGGACAAACTGAAGTTGTTAACAGAACCATGACTGCTATGCTTAGGGCTATTATTGATAAGAATCTTAAGACTTGGGAGGATTGTTTGCCATTTATAGAATTTGCATATAATAGGGTTGTTCATAGCACTACTAAATGCACACCTTTTGAAATTGTTTATGGCTTTAATCCTTTAACCCCTATTGACTTGTTACCCATACCGTCAAAAGAGTTTGTGAATTTTGATGCAAATGCCAAGGTTGAGTTTGTTCATAAACTGCACAAGCAAGTGAAAGAACAAATTGAGAAACAAAATTCCAAGGTTGCCACCCGAATTAATAAAGGACGTAAGATTGTCATCTTCAAGCCAGGAGATTGGGTTTGGGTGCATTTCCGAAAAGAAAGATTTCCTACTCAAAGAAAATCTAAGCTTTTACCACGAGGAGATGGACCTTTTCAAGTTCTTGAGCGCATCAACGACAATGCTTATAAAATTGATTTACCAGGTAAGTACGGTGTTAGTGCAACTTTTAATGTTGTTGATTTGAGCCCTTTTGATGTAGGTGATGGCTTGGATTCGAGGACGAATCCTTCTCAAGAGGGGGAGAATGATATGAACCACGACCAAGGAATTTCCATACCTCAAGGTCCAATTACAAGGACGAGAGCCAAGAAGCTACAACAAACTTTATACAGTTATATTCAAGCTATGGTGAGCTCATCAAAGGAAATTCTAGAAGACGCTGGAGACCTCCCTTATATGTTGTGCAAAGTTGAGGTTCAAGAAAGAGATGAATTAAATGCACTTTAA

Protein sequence

MENPDDNTNITDARLREAQQRTMERLIRGIEELTDRIGRLEIQNQARQRIPQPTPSTDTYEGDNSDHHEDNPHAVGPGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKTDPEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKKDSKNIDYKHRNQEINEKPQAKFEKGESSRTGKEKVENNVRNRDLKCWRCQGVGHYSRDCPNARIMTIKEGEIVTDDEAHDDINEETDESEEFSEEDPTHISLVTRRALNTHIKEDGLDQRENLFQTRCLVQSVPCSVVIDSGSCTNVVSSILVKRLNLKTQPHPRPYKLQWLNDCGEVRVTQQTLVSFTIGKYVDDVLCDVVSMHVGDLLLGRPWQFDRRVMYDGYANRYSFTHNGRKTTLIPLSPKDVFIDHCKLEKKRQEADAKAEIEKESSEKKSLSEKQESNTQPREKKERKAKSVSLYVRSSEARNVLLSNQTILVLMCKGSCYFTNMLNPSLPSDFVVLLQEFEDLFSEEMPSSLPPLRGIEHKIDFIPGSPIPNRPAYRTNPKEAEEIQRQVSELLAKGYVRESLSPCSVPVILVPKKDGSWRMCVDCRAINKITIKYRHPIPRLDDMLDELHGCSLFTKIDLKSGYHQIRMHIGDEWKTAFNTKYGLYEWLVMPFGLTNAPSTFMRLMNHVLREYLGKFVVVYFDDILVYSKSLDDHITHVRNVLTTLRNECLYVNLKKCSFCMEKVNFLGFVVSSNGVEVDEEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASPLNELVKKNVSFIWEKDQELAFNTLKEKLSSAPLLALPNFESTFEIECDASGVGIGAVLMQNQRPLMFFSEKLTGASLRYPTYDKELYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRRHAKWLEFIETFPYVIKYKQGKENIVADALSRRYVLLNTLNARLLSFEHIKDLYQHDMFFAPFVESCEKGLIVDNYLLLDGFLFRKGKLCIPSCSIRELLVREAHGGGLMAHHGVSKTYDMLSEHFFWPKMRHDVHKVCARCIACKQAKSRLQPHGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKMAHFIPCHKTDDAKHIADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYSTTCHPQTDGQTEVVNRTMTAMLRAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPFEIVYGFNPLTPIDLLPIPSKEFVNFDANAKVEFVHKLHKQVKEQIEKQNSKVATRINKGRKIVIFKPGDWVWVHFRKERFPTQRKSKLLPRGDGPFQVLERINDNAYKIDLPGKYGVSATFNVVDLSPFDVGDGLDSRTNPSQEGENDMNHDQGISIPQGPITRTRAKKLQQTLYSYIQAMVSSSKEILEDAGDLPYMLCKVEVQERDELNAL

Homology

[Close]

BLAST of CmoCh11G012290 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 578.9 bits (1491), Expect = 1.7e-163
Identity = 338/897 (37.68%), Postives = 492/897 (54.85%), Query Frame = 0


Query: 639  VVLLQEFEDLFSEEMPSSLPPLRGI--EHKIDFIPGSPIPNRPAYRTNPKEAEEIQRQVS 698
            V L Q++ ++   ++P     +  I  +H I+  PG+ +P    Y    K  +EI + V 
Sbjct: 558  VWLQQKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQ 617

Query: 699  ELLAKGYVRESLSPCSVPVILVPKKDGSWRMCVDCRAINKITIKYRHPIPRLDDMLDELH 758
            +LL   ++  S SPCS PV+LVPKKDG++R+CVD R +NK TI    P+PR+D++L  + 
Sbjct: 618  KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG 677

Query: 759  GCSLFTKIDLKSGYHQIRMHIGDEWKTAFNTKYGLYEWLVMPFGLTNAPSTFMRLMNHVL 818
               +FT +DL SGYHQI M   D +KTAF T  G YE+ VMPFGL NAPSTF R M    
Sbjct: 678  NAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTF 737

Query: 819  REYLGKFVVVYFDDILVYSKSLDDHITHVRNVLTTLRNECLYVNLKKCSFCMEKVNFLGF 878
            R+   +FV VY DDIL++S+S ++H  H+  VL  L+NE L V  KKC F  E+  FLG+
Sbjct: 738  RDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGY 797

Query: 879  VVSSNGVEVDEEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASPLNELVKKN 938
             +    +   + K  AI+D+PTPK V + + F G+ ++YRRFI N S IA P+   +   
Sbjct: 798  SIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDK 857

Query: 939  VSFIWEKDQELAFNTLKEKLSSAPLLALPNFESTFEIECDASGVGIGAVL--MQNQRPLM 998
                W + Q+ A + LK+ L ++P+L   N ++ + +  DAS  GIGAVL  + N+  L+
Sbjct: 858  SQ--WTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLV 917

Query: 999  ----FFSEKLTGASLRYPTYDKELYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNK 1058
                +FS+ L  A   YP  + EL  +++AL  +++ L  K F + TDH SL  L+ +N+
Sbjct: 918  GVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNE 977

Query: 1059 LNRRHAKWLEFIETFPYVIKYKQGKENIVADALSRRYVLLNTLNARLLSFE--------- 1118
              RR  +WL+ + T+ + ++Y  G +N+VADA+SR    +    +R +  E         
Sbjct: 978  PARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAVYTITPETSRPIDTESWKSYYKSD 1037

Query: 1119 --------HIKDLYQHDM------FFAPFVESCE-KGLIVDNYLLLDGFLFRKGKLCIPS 1178
                    H+K+L QH++       F  + +  E       NY L D  ++ + +L +P 
Sbjct: 1038 PLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVP- 1097

Query: 1179 CSIRELLVREAHGGGLM-AHHGVSKTYDMLSEHFFWPKMRHDVHKVCARCIACKQAKS-R 1238
               +  ++R  H   L   H GV+ T   +S  ++WPK++H + +    C+ C+  KS R
Sbjct: 1098 IKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHR 1157

Query: 1239 LQPHGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKMAHFIPCHKTDDA 1298
             + HGL  PLP+  G W+DISMDFV GLP T    + I VVVDRFSK AHFI   KT DA
Sbjct: 1158 PRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDA 1217

Query: 1299 KHIADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYSTTCHPQTDGQTE 1358
              + DL FR +   HG P++I SDRDV+  +  ++ L  +LG K   S+  HPQTDGQ+E
Sbjct: 1218 TQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSE 1277

Query: 1359 VVNRTMTAMLRAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPFEIVYGFNPLTPIDLL 1418
               +T+  +LRA    N++ W   LP IEF YN     T   +PFEI  G+ P TP    
Sbjct: 1278 RTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTP---- 1337

Query: 1419 PIPSKEFVNFDANAKVEFVHKLHK---QVKEQIEKQNSKVATRINKGRKIVIFKPGDWVW 1478
             I S + VN  +   VE    L     Q KEQ+E    ++ T  N+ RK ++   GD V 
Sbjct: 1338 AIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVL 1397

Query: 1479 VHFRKERFPTQRKSKLLPRGDGPFQVLERINDNAYKIDLPGKYGVSATFNVVDLSPF 1499
            VH R   F      K+     GPF+V+++INDNAY++DL          NV  L  F
Sbjct: 1398 VH-RDAYFKKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKKF 1444

[Close]

BLAST of CmoCh11G012290 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 576.6 bits (1485), Expect = 8.4e-163
Identity = 334/879 (38.00%), Postives = 487/879 (55.40%), Query Frame = 0


Query: 639  VVLLQEFEDLFSEEMPSSLPPLRGI--EHKIDFIPGSPIPNRPAYRTNPKEAEEIQRQVS 698
            V L Q++ ++   ++P     +  I  +H I+  PG+ +P    Y    K  +EI + V 
Sbjct: 584  VWLQQKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQ 643

Query: 699  ELLAKGYVRESLSPCSVPVILVPKKDGSWRMCVDCRAINKITIKYRHPIPRLDDMLDELH 758
            +LL   ++  S SPCS PV+LVPKKDG++R+CVD R +NK TI    P+PR+D++L  + 
Sbjct: 644  KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG 703

Query: 759  GCSLFTKIDLKSGYHQIRMHIGDEWKTAFNTKYGLYEWLVMPFGLTNAPSTFMRLMNHVL 818
               +FT +DL SGYHQI M   D +KTAF T  G YE+ VMPFGL NAPSTF R M    
Sbjct: 704  NAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTF 763

Query: 819  REYLGKFVVVYFDDILVYSKSLDDHITHVRNVLTTLRNECLYVNLKKCSFCMEKVNFLGF 878
            R+   +FV VY DDIL++S+S ++H  H+  VL  L+NE L V  KKC F  E+  FLG+
Sbjct: 764  RDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGY 823

Query: 879  VVSSNGVEVDEEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASPLNELVKKN 938
             +    +   + K  AI+D+PTPK V + + F G+ ++YRRFI N S IA P+   +   
Sbjct: 824  SIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDK 883

Query: 939  VSFIWEKDQELAFNTLKEKLSSAPLLALPNFESTFEIECDASGVGIGAVL--MQNQRPLM 998
                W + Q+ A   LK  L ++P+L   N ++ + +  DAS  GIGAVL  + N+  L+
Sbjct: 884  SQ--WTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLV 943

Query: 999  ----FFSEKLTGASLRYPTYDKELYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNK 1058
                +FS+ L  A   YP  + EL  +++AL  +++ L  K F + TDH SL  L+ +N+
Sbjct: 944  GVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNE 1003

Query: 1059 LNRRHAKWLEFIETFPYVIKYKQGKENIVADALSRRYVLLNTLNARLLSFE--------- 1118
              RR  +WL+ + T+ + ++Y  G +N+VADA+SR    +    +R +  E         
Sbjct: 1004 PARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAIYTITPETSRPIDTESWKSYYKSD 1063

Query: 1119 --------HIKDLYQHDM------FFAPFVESCE-KGLIVDNYLLLDGFLFRKGKLCIPS 1178
                    H+K+L QH++       F  + +  E       NY L D  ++ + +L +P 
Sbjct: 1064 PLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVP- 1123

Query: 1179 CSIRELLVREAHGGGLM-AHHGVSKTYDMLSEHFFWPKMRHDVHKVCARCIACKQAKS-R 1238
               +  ++R  H   L   H GV+ T   +S  ++WPK++H + +    C+ C+  KS R
Sbjct: 1124 IKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHR 1183

Query: 1239 LQPHGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKMAHFIPCHKTDDA 1298
             + HGL  PLP+  G W+DISMDFV GLP T    + I VVVDRFSK AHFI   KT DA
Sbjct: 1184 PRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDA 1243

Query: 1299 KHIADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYSTTCHPQTDGQTE 1358
              + DL FR +   HG P++I SDRDV+  +  ++ L  +LG K   S+  HPQTDGQ+E
Sbjct: 1244 TQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSE 1303

Query: 1359 VVNRTMTAMLRAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPFEIVYGFNPLTPIDLL 1418
               +T+  +LRA +  N++ W   LP IEF YN     T   +PFEI  G+ P TP    
Sbjct: 1304 RTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTP---- 1363

Query: 1419 PIPSKEFVNFDANAKVEFVHKLHK---QVKEQIEKQNSKVATRINKGRKIVIFKPGDWVW 1478
             I S + VN  +   VE    L     Q KEQ+E    ++ T  N+ RK ++   GD V 
Sbjct: 1364 AIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVL 1423

Query: 1479 VHFRKERFPTQRKSKLLPRGDGPFQVLERINDNAYKIDL 1481
            VH R   F      K+     GPF+V+++INDNAY++DL
Sbjct: 1424 VH-RDAYFKKGAYMKVQQIYVGPFRVVKKINDNAYELDL 1452

[Close]

BLAST of CmoCh11G012290 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 4.2e-146
Identity = 308/903 (34.11%), Postives = 492/903 (54.49%), Query Frame = 0


Query: 632  PSLPSDFVVLLQEFEDLFSEEMPSSLP-PLRGIEHKIDFIPGS---PIPNRPAYRTNPKE 691
            P LP     + +EF+D+ +E     LP P++G+E +++    +   PI N   Y   P +
Sbjct: 372  PELPD----IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN---YPLPPGK 431

Query: 692  AEEIQRQVSELLAKGYVRESLSPCSVPVILVPKKDGSWRMCVDCRAINKITIKYRHPIPR 751
             + +  ++++ L  G +RES +  + PV+ VPKK+G+ RM VD + +NK      +P+P 
Sbjct: 432  MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPL 491

Query: 752  LDDMLDELHGCSLFTKIDLKSGYHQIRMHIGDEWKTAFNTKYGLYEWLVMPFGLTNAPST 811
            ++ +L ++ G ++FTK+DLKS YH IR+  GDE K AF    G++E+LVMP+G++ AP+ 
Sbjct: 492  IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAH 551

Query: 812  FMRLMNHVLREYLGKFVVVYFDDILVYSKSLDDHITHVRNVLTTLRNECLYVNLKKCSFC 871
            F   +N +L E     VV Y DDIL++SKS  +H+ HV++VL  L+N  L +N  KC F 
Sbjct: 552  FQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFH 611

Query: 872  MEKVNFLGFVVSSNGVEVDEEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIAS 931
              +V F+G+ +S  G    +E +  +  W  PKN  E+R F G  ++ R+FI   S +  
Sbjct: 612  QSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTH 671

Query: 932  PLNELVKKNVSFIWEKDQELAFNTLKEKLSSAPLLALPNFESTFEIECDASGVGIGAVLM 991
            PLN L+KK+V + W   Q  A   +K+ L S P+L   +F     +E DAS V +GAVL 
Sbjct: 672  PLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLS 731

Query: 992  QNQ-----RPLMFFSEKLTGASLRYPTYDKELYALVRALQTWQHYLWP--KEFIIHTDHE 1051
            Q        P+ ++S K++ A L Y   DKE+ A++++L+ W+HYL    + F I TDH 
Sbjct: 732  QKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHR 791

Query: 1052 SLKHLRVQNKL---NRRHAKWLEFIETFPYVIKYKQGKENIVADALSR------------ 1111
            +L   R+ N+    N+R A+W  F++ F + I Y+ G  N +ADALSR            
Sbjct: 792  NLIG-RITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDS 851

Query: 1112 RYVLLNTLNARLLSFE---HIKDLYQHDMFFAPFVESCEKGLIVDNYLLLDGFLFR-KGK 1171
                +N +N   ++ +    +   Y +D      + + +K  + +N  L DG L   K +
Sbjct: 852  EDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDK-RVEENIQLKDGLLINSKDQ 911

Query: 1172 LCIPS-CSIRELLVREAHGGGLMAHHGVSKTYDMLSEHFFWPKMRHDVHKVCARCIACKQ 1231
            + +P+   +   ++++ H  G + H G+    +++   F W  +R  + +    C  C+ 
Sbjct: 912  ILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQI 971

Query: 1232 AKSR-LQPHGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKMAHFIPCH 1291
             KSR  +P+G   P+P    PW  +SMDF+  LP +  GY+++FVVVDRFSKMA  +PC 
Sbjct: 972  NKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCT 1031

Query: 1292 KTDDAKHIADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYSTTCHPQT 1351
            K+  A+  A +F + V+   G PK I++D D  F S  W+    K    + +S    PQT
Sbjct: 1032 KSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQT 1091

Query: 1352 DGQTEVVNRTMTAMLRAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPFEIVYGFNP-L 1411
            DGQTE  N+T+  +LR +   +  TW D +  ++ +YN  +HS T+ TPFEIV+ ++P L
Sbjct: 1092 DGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPAL 1151

Query: 1412 TPIDLLPIPSKEFVNFDANAKVEFVHKLHKQVKEQIEKQNSKVATRIN-KGRKIVIFKPG 1471
            +P++L     K   N     +V       + VKE +   N K+    + K ++I  F+PG
Sbjct: 1152 SPLELPSFSDKTDENSQETIQV------FQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPG 1211

Query: 1472 DWVWVHFRKERFPTQRKSKLLPRGDGPFQVLERINDNAYKIDLPG--KYGVSATFNVVDL 1499
            D V V   K  F   + +KL P   GPF VL++   N Y++DLP   K+  S+TF+V  L
Sbjct: 1212 DLVMVKRTKTGF-LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHL 1257

[Close]

BLAST of CmoCh11G012290 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 4.2e-146
Identity = 308/903 (34.11%), Postives = 492/903 (54.49%), Query Frame = 0


Query: 632  PSLPSDFVVLLQEFEDLFSEEMPSSLP-PLRGIEHKIDFIPGS---PIPNRPAYRTNPKE 691
            P LP     + +EF+D+ +E     LP P++G+E +++    +   PI N   Y   P +
Sbjct: 372  PELPD----IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN---YPLPPGK 431

Query: 692  AEEIQRQVSELLAKGYVRESLSPCSVPVILVPKKDGSWRMCVDCRAINKITIKYRHPIPR 751
             + +  ++++ L  G +RES +  + PV+ VPKK+G+ RM VD + +NK      +P+P 
Sbjct: 432  MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPL 491

Query: 752  LDDMLDELHGCSLFTKIDLKSGYHQIRMHIGDEWKTAFNTKYGLYEWLVMPFGLTNAPST 811
            ++ +L ++ G ++FTK+DLKS YH IR+  GDE K AF    G++E+LVMP+G++ AP+ 
Sbjct: 492  IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAH 551

Query: 812  FMRLMNHVLREYLGKFVVVYFDDILVYSKSLDDHITHVRNVLTTLRNECLYVNLKKCSFC 871
            F   +N +L E     VV Y DDIL++SKS  +H+ HV++VL  L+N  L +N  KC F 
Sbjct: 552  FQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFH 611

Query: 872  MEKVNFLGFVVSSNGVEVDEEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIAS 931
              +V F+G+ +S  G    +E +  +  W  PKN  E+R F G  ++ R+FI   S +  
Sbjct: 612  QSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTH 671

Query: 932  PLNELVKKNVSFIWEKDQELAFNTLKEKLSSAPLLALPNFESTFEIECDASGVGIGAVLM 991
            PLN L+KK+V + W   Q  A   +K+ L S P+L   +F     +E DAS V +GAVL 
Sbjct: 672  PLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLS 731

Query: 992  QNQ-----RPLMFFSEKLTGASLRYPTYDKELYALVRALQTWQHYLWP--KEFIIHTDHE 1051
            Q        P+ ++S K++ A L Y   DKE+ A++++L+ W+HYL    + F I TDH 
Sbjct: 732  QKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHR 791

Query: 1052 SLKHLRVQNKL---NRRHAKWLEFIETFPYVIKYKQGKENIVADALSR------------ 1111
            +L   R+ N+    N+R A+W  F++ F + I Y+ G  N +ADALSR            
Sbjct: 792  NLIG-RITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDS 851

Query: 1112 RYVLLNTLNARLLSFE---HIKDLYQHDMFFAPFVESCEKGLIVDNYLLLDGFLFR-KGK 1171
                +N +N   ++ +    +   Y +D      + + +K  + +N  L DG L   K +
Sbjct: 852  EDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDK-RVEENIQLKDGLLINSKDQ 911

Query: 1172 LCIPS-CSIRELLVREAHGGGLMAHHGVSKTYDMLSEHFFWPKMRHDVHKVCARCIACKQ 1231
            + +P+   +   ++++ H  G + H G+    +++   F W  +R  + +    C  C+ 
Sbjct: 912  ILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQI 971

Query: 1232 AKSR-LQPHGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKMAHFIPCH 1291
             KSR  +P+G   P+P    PW  +SMDF+  LP +  GY+++FVVVDRFSKMA  +PC 
Sbjct: 972  NKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCT 1031

Query: 1292 KTDDAKHIADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYSTTCHPQT 1351
            K+  A+  A +F + V+   G PK I++D D  F S  W+    K    + +S    PQT
Sbjct: 1032 KSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQT 1091

Query: 1352 DGQTEVVNRTMTAMLRAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPFEIVYGFNP-L 1411
            DGQTE  N+T+  +LR +   +  TW D +  ++ +YN  +HS T+ TPFEIV+ ++P L
Sbjct: 1092 DGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPAL 1151

Query: 1412 TPIDLLPIPSKEFVNFDANAKVEFVHKLHKQVKEQIEKQNSKVATRIN-KGRKIVIFKPG 1471
            +P++L     K   N     +V       + VKE +   N K+    + K ++I  F+PG
Sbjct: 1152 SPLELPSFSDKTDENSQETIQV------FQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPG 1211

Query: 1472 DWVWVHFRKERFPTQRKSKLLPRGDGPFQVLERINDNAYKIDLPG--KYGVSATFNVVDL 1499
            D V V   K  F   + +KL P   GPF VL++   N Y++DLP   K+  S+TF+V  L
Sbjct: 1212 DLVMVKRTKTGF-LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHL 1257

[Close]

BLAST of CmoCh11G012290 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 4.2e-146
Identity = 308/903 (34.11%), Postives = 492/903 (54.49%), Query Frame = 0


Query: 632  PSLPSDFVVLLQEFEDLFSEEMPSSLP-PLRGIEHKIDFIPGS---PIPNRPAYRTNPKE 691
            P LP     + +EF+D+ +E     LP P++G+E +++    +   PI N   Y   P +
Sbjct: 372  PELPD----IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN---YPLPPGK 431

Query: 692  AEEIQRQVSELLAKGYVRESLSPCSVPVILVPKKDGSWRMCVDCRAINKITIKYRHPIPR 751
             + +  ++++ L  G +RES +  + PV+ VPKK+G+ RM VD + +NK      +P+P 
Sbjct: 432  MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPL 491

Query: 752  LDDMLDELHGCSLFTKIDLKSGYHQIRMHIGDEWKTAFNTKYGLYEWLVMPFGLTNAPST 811
            ++ +L ++ G ++FTK+DLKS YH IR+  GDE K AF    G++E+LVMP+G++ AP+ 
Sbjct: 492  IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAH 551

Query: 812  FMRLMNHVLREYLGKFVVVYFDDILVYSKSLDDHITHVRNVLTTLRNECLYVNLKKCSFC 871
            F   +N +L E     VV Y DDIL++SKS  +H+ HV++VL  L+N  L +N  KC F 
Sbjct: 552  FQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFH 611

Query: 872  MEKVNFLGFVVSSNGVEVDEEKVKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIAS 931
              +V F+G+ +S  G    +E +  +  W  PKN  E+R F G  ++ R+FI   S +  
Sbjct: 612  QSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTH 671

Query: 932  PLNELVKKNVSFIWEKDQELAFNTLKEKLSSAPLLALPNFESTFEIECDASGVGIGAVLM 991
            PLN L+KK+V + W   Q  A   +K+ L S P+L   +F     +E DAS V +GAVL 
Sbjct: 672  PLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLS 731

Query: 992  QNQ-----RPLMFFSEKLTGASLRYPTYDKELYALVRALQTWQHYLWP--KEFIIHTDHE 1051
            Q        P+ ++S K++ A L Y   DKE+ A++++L+ W+HYL    + F I TDH 
Sbjct: 732  QKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHR 791

Query: 1052 SLKHLRVQNKL---NRRHAKWLEFIETFPYVIKYKQGKENIVADALSR------------ 1111
            +L   R+ N+    N+R A+W  F++ F + I Y+ G  N +ADALSR            
Sbjct: 792  NLIG-RITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDS 851

Query: 1112 RYVLLNTLNARLLSFE---HIKDLYQHDMFFAPFVESCEKGLIVDNYLLLDGFLFR-KGK 1171
                +N +N   ++ +    +   Y +D      + + +K  + +N  L DG L   K +
Sbjct: 852  EDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDK-RVEENIQLKDGLLINSKDQ 911

Query: 1172 LCIPS-CSIRELLVREAHGGGLMAHHGVSKTYDMLSEHFFWPKMRHDVHKVCARCIACKQ 1231
            + +P+   +   ++++ H  G + H G+    +++   F W  +R  + +    C  C+ 
Sbjct: 912  ILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQI 971

Query: 1232 AKSR-LQPHGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKMAHFIPCH 1291
             KSR  +P+G   P+P    PW  +SMDF+  LP +  GY+++FVVVDRFSKMA  +PC 
Sbjct: 972  NKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCT 1031

Query: 1292 KTDDAKHIADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYSTTCHPQT 1351
            K+  A+  A +F + V+   G PK I++D D  F S  W+    K    + +S    PQT
Sbjct: 1032 KSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQT 1091

Query: 1352 DGQTEVVNRTMTAMLRAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPFEIVYGFNP-L 1411
            DGQTE  N+T+  +LR +   +  TW D +  ++ +YN  +HS T+ TPFEIV+ ++P L
Sbjct: 1092 DGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPAL 1151

Query: 1412 TPIDLLPIPSKEFVNFDANAKVEFVHKLHKQVKEQIEKQNSKVATRIN-KGRKIVIFKPG 1471
            +P++L     K   N     +V       + VKE +   N K+    + K ++I  F+PG
Sbjct: 1152 SPLELPSFSDKTDENSQETIQV------FQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPG 1211

Query: 1472 DWVWVHFRKERFPTQRKSKLLPRGDGPFQVLERINDNAYKIDLPG--KYGVSATFNVVDL 1499
            D V V   K  F   + +KL P   GPF VL++   N Y++DLP   K+  S+TF+V  L
Sbjct: 1212 DLVMVKRTKTGF-LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHL 1257

[Close]

BLAST of CmoCh11G012290 vs. ExPASy TrEMBL
Match: A0A2N9HBD3 (Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12373 PE=4 SV=1)

HSP 1 Score: 1946.4 bits (5041), Expect = 0.0e+00
Identity = 957/1566 (61.11%), Postives = 1195/1566 (76.31%), Query Frame = 0


Query: 18   AQQRTMERLIRGIEELTDRIGRLE-IQNQARQRIPQPTP---------STDTYEGDNSDH 77
            A Q+  ER+     E+ DR+ R + +    R+  PQ  P           D  +GD+ D 
Sbjct: 4    AMQQQFERMDVMFNEIRDRMDRQDAVITGWREGRPQGGPYVRRQARRAPVDDSDGDHEDE 63

Query: 78   ---HEDNPHAVGPGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKTDPEE 137
                ED     G  + RG   GR +   +  + + D  D ++G+IK+K+P F GK DPE 
Sbjct: 64   FEGEEDQASLNGRFVPRGERRGRGF---RTGLRWRDGTDGDLGNIKMKIPSFQGKNDPEA 123

Query: 138  YLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFK 197
            YL+WEK VE +F CHN+S+EKKV L + +F  YA IWWD+L+ +RRRN E  I++W E +
Sbjct: 124  YLEWEKKVELIFECHNYSEEKKVKLAVIEFTDYAIIWWDQLVMNRRRNHERAIETWEEMR 183

Query: 198  ESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNG 257
              MR+RFVP ++ RD+ QKLQ+L QG +SV+DYYKEM+  + R  ++ED EA MARFLNG
Sbjct: 184  AIMRRRFVPSHYYRDLYQKLQSLTQGYRSVDDYYKEMEIALIRANVEEDREATMARFLNG 243

Query: 258  LNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKKDSKNIDYK 317
            LN +IA+  +LQ Y  +E+++H+AIK+ERQ++R+  R  S   P S+++WK + +    K
Sbjct: 244  LNRDIANVVELQHYVELEDMVHMAIKVERQLKRKGTR--SFQNPGSSTSWKSNWR----K 303

Query: 318  HRNQEINEKPQAKFEKGESSRTGKEKVENNVRNRDLKCWRCQGVGHYSRDCPNARIMTIK 377
                 +  K +    + E     K K E+  RNRD+KC+RC GVGH +  CPN R M  +
Sbjct: 304  DEGAVLKSKTEPPKRREEVPSVNKGKTESQTRNRDIKCFRCLGVGHIASQCPNKRTMIAR 363

Query: 378  -EGEIVTDDEAHDD----INEETDESEEFSEEDPTHISLVTRRALNTHIKEDGLD-QREN 437
             +GE+ T+ E+  D    + +  D+  E+  E     SLV RRAL+  +KED ++ QREN
Sbjct: 364  VDGEVETESESDADQMPMLEDTCDDDVEYPVEGE---SLVARRALSAQVKEDDMEQQREN 423

Query: 438  LFQTRCLVQSVPCSVVIDSGSCTNVVSSILVKRLNLKTQPHPRPYKLQWLNDCGEVRVTQ 497
            +F TRC + +  CS++ID GSCTNV S+ LV++LN  T  HP PYKL+WLNDCGE++VT+
Sbjct: 424  IFHTRCHINNKVCSMIIDGGSCTNVASTTLVEKLNFPTLKHPMPYKLKWLNDCGEIKVTK 483

Query: 498  QTLVSFTIGKYVDDVLCDVVSMHVGDLLLGRPWQFDRRVMYDGYANRYSFTHNGRKTTLI 557
            Q L+SF+IGKY D+VLCDVV MH G +LLGRPWQFDR+ ++DG+ NRYSF  + R  TLI
Sbjct: 484  QVLISFSIGKYKDEVLCDVVPMHAGHILLGRPWQFDRKAIHDGFKNRYSFVKDSRTVTLI 543

Query: 558  PLSPKDVFIDHCKLEKKR------QEADAKAEIEKESSEKKSLSEKQESNTQPREKKERK 617
            PL+P+ V+ D  KL+++       +   +K E EKES  KK   +K+E  T   E+++  
Sbjct: 544  PLTPRQVYEDQVKLKRENELKKNCETESSKKEDEKESERKKESEKKKERVTNTSEQQK-- 603

Query: 618  AKSVSLYVRSSEARNVLLSNQTILVLMCKGSCYFTNMLNPSLPSDFVVLLQEFEDLFSEE 677
             K VS Y ++S+ +N   +NQ I VL+ K +C+ TN L+ SLPS  + LLQE+ED+F  +
Sbjct: 604  -KQVSFYAKASDVKNAFYANQPIFVLLYKEACFNTNELDESLPSVVISLLQEYEDVFPND 663

Query: 678  MPSSLPPLRGIEHKIDFIPGSPIPNRPAYRTNPKEAEEIQRQVSELLAKGYVRESLSPCS 737
            +PS LPP+RGIEH+IDF+PG+ IPNRPAYR+NP+E +E+QRQV ELLAKG+VRES+SPC+
Sbjct: 664  VPSGLPPIRGIEHQIDFVPGATIPNRPAYRSNPEETKELQRQVEELLAKGHVRESMSPCA 723

Query: 738  VPVILVPKKDGSWRMCVDCRAINKITIKYRHPIPRLDDMLDELHGCSLFTKIDLKSGYHQ 797
            VPV+LVPKKDG+WRMCVDCRAIN IT+KYRHPIPRLDDMLDELHG  +FTKIDLKSGYHQ
Sbjct: 724  VPVLLVPKKDGTWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSCIFTKIDLKSGYHQ 783

Query: 798  IRMHIGDEWKTAFNTKYGLYEWLVMPFGLTNAPSTFMRLMNHVLREYLGKFVVVYFDDIL 857
            IRM  GDEWKTAF TKYGLYEWLVMPFGLTNAPSTFMRLMNH LR +LG+FVVVYFDDIL
Sbjct: 784  IRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHALRAFLGRFVVVYFDDIL 843

Query: 858  VYSKSLDDHITHVRNVLTTLRNECLYVNLKKCSFCMEKVNFLGFVVSSNGVEVDEEKVKA 917
            VYSKSLD+HI H+  VLT LR E LY NLKKCSFC++KV FLGFVV + G+ VDEEKVKA
Sbjct: 844  VYSKSLDEHIDHLHCVLTVLRKEKLYANLKKCSFCLDKVVFLGFVVGAKGITVDEEKVKA 903

Query: 918  IKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASPLNELVKKNVSFIWEKDQELAFNTL 977
            IK+WPTPK+++EVRSFHGLASFYRRF+K+FST+A+PL E+VKK+V F W  +Q+ AF  +
Sbjct: 904  IKEWPTPKSITEVRSFHGLASFYRRFVKDFSTLAAPLTEIVKKSVGFKWGSEQDRAFIEI 963

Query: 978  KEKLSSAPLLALPNFESTFEIECDASGVGIGAVLMQNQRPLMFFSEKLTGASLRYPTYDK 1037
            KE+L  APLLALP+F  TFEIECDASG+GIGAVLMQ +RP+ +FSEKL GA L YPTYDK
Sbjct: 964  KERLCGAPLLALPDFSKTFEIECDASGIGIGAVLMQEKRPIAYFSEKLNGAVLNYPTYDK 1023

Query: 1038 ELYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRRHAKWLEFIETFPYVIKYK 1097
            ELYALVRAL+TWQHYLWPKEF+IHTDHESLKHL+ Q KLNRRHA+W+EFIETFPYVIKYK
Sbjct: 1024 ELYALVRALETWQHYLWPKEFVIHTDHESLKHLKGQGKLNRRHAQWMEFIETFPYVIKYK 1083

Query: 1098 QGKENIVADALSRRYVLLNTLNARLLSFEHIKDLYQHDMFFAPFVESCEKGLIVDNYLLL 1157
            QGKENIVADALSRRY L++TLNA+LL FE++K+LY +D  FA    +CEK      +  +
Sbjct: 1084 QGKENIVADALSRRYALISTLNAKLLGFEYVKELYVNDDDFASVFAACEKAAF-GKFYRI 1143

Query: 1158 DGFLFRKGKLCIPSCSIRELLVREAHGGGLMAHHGVSKTYDMLSEHFFWPKMRHDVHKVC 1217
            DG+LFR+ +LC+P+ S+RELLVREAHGGGLM H GV KT DML EHFFWPKM+ DV +VC
Sbjct: 1144 DGYLFRENRLCVPNSSMRELLVREAHGGGLMGHFGVRKTLDMLHEHFFWPKMKRDVERVC 1203

Query: 1218 ARCIACKQAKSRLQPHGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRFSKM 1277
            +RC+ C+QAKSR+ PHGLY+PLPVP+ PW+DISMDFVLGLPR+RKG DSIFVVVDRFSKM
Sbjct: 1204 SRCVTCRQAKSRVLPHGLYTPLPVPSAPWVDISMDFVLGLPRSRKGRDSIFVVVDRFSKM 1263

Query: 1278 AHFIPCHKTDDAKHIADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKLVYS 1337
            AHFI CHKTDDA HIADLFFRE+VRLHG+P+SIVSDRDVKFLS+FW+VLWGKLGTKL++S
Sbjct: 1264 AHFISCHKTDDATHIADLFFREIVRLHGVPRSIVSDRDVKFLSYFWKVLWGKLGTKLLFS 1323

Query: 1338 TTCHPQTDGQTEVVNRTMTAMLRAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPFEIV 1397
            TTCHPQTDGQTEVVNRT++ +LR II KNLK WEDCLPFIEFAYNR VHSTT+ +PFEIV
Sbjct: 1324 TTCHPQTDGQTEVVNRTLSTLLRTIIQKNLKNWEDCLPFIEFAYNRSVHSTTEFSPFEIV 1383

Query: 1398 YGFNPLTPIDLLPIPSKEFVNFDANAKVEFVHKLHKQVKEQIEKQNSKVATRINKGRKIV 1457
            YGFNPLTP+DLLP+P  E  + D   K E V KLH+ V++ IEK+N + A + NKGR+ V
Sbjct: 1384 YGFNPLTPLDLLPLPVNERTSLDGQKKAEMVKKLHESVRQHIEKKNEQYANKANKGRRQV 1443

Query: 1458 IFKPGDWVWVHFRKERFPTQRKSKLLPRGDGPFQVLERINDNAYKIDLPGKYGVSATFNV 1517
            IF+PGDWVWVH RKERFP +R+SKL PRGDGPFQVLERINDNAYK+DLPG+Y +SATFNV
Sbjct: 1444 IFQPGDWVWVHMRKERFPARRRSKLHPRGDGPFQVLERINDNAYKLDLPGEYNISATFNV 1503

Query: 1518 VDLSPFDVGDGLDSRTNPSQEGENDMNHD----QGISIPQGPITRTRAKKLQQTLYSYIQ 1555
             DLS FDVGD  DSR+NP +E  ND N        + +P GPITR R+KK+++ L   IQ
Sbjct: 1504 SDLSLFDVGD--DSRSNPFEERGNDENQQALLKDPLHVPVGPITRARSKKIKEALNGLIQ 1551

[Close]

BLAST of CmoCh11G012290 vs. ExPASy TrEMBL
Match: A0A2N9G0F9 (Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20920 PE=4 SV=1)

HSP 1 Score: 1945.2 bits (5038), Expect = 0.0e+00
Identity = 955/1569 (60.87%), Postives = 1194/1569 (76.10%), Query Frame = 0


Query: 18   AQQRTMERLIRGIEELTDRIGRLE----------------IQNQARQRIPQPTPSTDTYE 77
            A Q+  ER+     E+ DR+ R +                ++ QAR+    P   +D   
Sbjct: 4    AMQQQFERMDVMFNEIRDRMDRQDAVIAGWREGRPQGGPYVRRQARR---APVDDSDGDH 63

Query: 78   GDNSDHHEDNPHAVGPGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKTD 137
             D  +  ED     G  + RG   GR +   +  + + D  D N+G+IK+K+P F GK D
Sbjct: 64   EDEFEGEEDQASLNGRFVPRGERRGRGF---RTGLRWRDGTDGNLGNIKMKIPSFQGKND 123

Query: 138  PEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWV 197
            PE YL+WEK VE +F CHN+S+EKKV L + +F  YA IWWD+L+ +RRRN E  I++W 
Sbjct: 124  PEAYLEWEKKVELIFECHNYSEEKKVKLAVIEFTDYAIIWWDQLVMNRRRNHERAIETWE 183

Query: 198  EFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARF 257
            E +  MR+RFVP ++ RD+ QKLQ+L QG +SV+DYYKEM+  + R  ++ED EA MARF
Sbjct: 184  EMRAIMRRRFVPSHYYRDLYQKLQSLTQGYRSVDDYYKEMEIALIRANVEEDREATMARF 243

Query: 258  LNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKKDSKNI 317
            LNGLN +IA+  +LQ Y  +E+++H+AIK+ERQ++R+  R  S   P S+++WK + +  
Sbjct: 244  LNGLNRDIANVVELQHYVELEDMVHMAIKVERQLKRKGTR--SFQNPGSSTSWKSNWR-- 303

Query: 318  DYKHRNQEINEKPQAKFEKGESSRTGKEKVENNVRNRDLKCWRCQGVGHYSRDCPNARIM 377
              K     +  K +    + E     K K E+  RNRD+KC+RC GVGH +  CPN R M
Sbjct: 304  --KDEGAVLKSKTEPPKRREEVPSVNKGKTESQTRNRDIKCFRCLGVGHIASQCPNKRTM 363

Query: 378  TIK-EGEIVTDDEAHDD----INEETDESEEFSEEDPTHISLVTRRALNTHIKEDGLD-Q 437
              + +GE+ T+ E+  D    + +  D+  E+  E     SLV RRAL+  +KED ++ Q
Sbjct: 364  IARVDGEVETESESDADQMPMLEDTCDDDVEYPVEGE---SLVARRALSAQVKEDDMEQQ 423

Query: 438  RENLFQTRCLVQSVPCSVVIDSGSCTNVVSSILVKRLNLKTQPHPRPYKLQWLNDCGEVR 497
            REN+F TRC + +  CS++ID GSCTNV S+ LV++LN  T  HP PYKL+WLNDCGE++
Sbjct: 424  RENIFHTRCHINNKVCSMIIDGGSCTNVASTTLVEKLNFPTLKHPMPYKLKWLNDCGEIK 483

Query: 498  VTQQTLVSFTIGKYVDDVLCDVVSMHVGDLLLGRPWQFDRRVMYDGYANRYSFTHNGRKT 557
            VT+Q L+SF+IGKY D+VLCDVV MH G +LLGRPWQFDR+ ++DG+ NRYSF  + R  
Sbjct: 484  VTKQVLISFSIGKYKDEVLCDVVPMHAGHILLGRPWQFDRKAIHDGFKNRYSFVKDSRTV 543

Query: 558  TLIPLSPKDVFIDHCKLEKKR------QEADAKAEIEKESSEKKSLSEKQESNTQPREKK 617
            TL+PL+P+ V+ D  KL+++       +   +K E EKES  KK   +K+E  T   E++
Sbjct: 544  TLVPLTPRQVYEDQVKLKRENELKKNCETESSKKEDEKESERKKESEKKKERVTNTSEQQ 603

Query: 618  ERKAKSVSLYVRSSEARNVLLSNQTILVLMCKGSCYFTNMLNPSLPSDFVVLLQEFEDLF 677
            +   K VS Y ++S+ ++   +NQ I VL+ K +C+ TN L+ SLPS  V LLQE+ED+F
Sbjct: 604  K---KQVSFYAKASDVKSAFYANQPIFVLLYKEACFNTNELDESLPSVVVSLLQEYEDVF 663

Query: 678  SEEMPSSLPPLRGIEHKIDFIPGSPIPNRPAYRTNPKEAEEIQRQVSELLAKGYVRESLS 737
              ++PS LPP+RGIEH+IDF+PG+ IPNRPAYR+NP+E +E+QRQV ELLAKG+VRES+S
Sbjct: 664  PNDVPSGLPPIRGIEHQIDFVPGATIPNRPAYRSNPEETKELQRQVEELLAKGHVRESMS 723

Query: 738  PCSVPVILVPKKDGSWRMCVDCRAINKITIKYRHPIPRLDDMLDELHGCSLFTKIDLKSG 797
            PC+VPV+LVPKKDG+WRMCVDCRAIN IT+KYRHPIPRLDDMLDELHG  +FTKIDLKSG
Sbjct: 724  PCAVPVLLVPKKDGTWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSCIFTKIDLKSG 783

Query: 798  YHQIRMHIGDEWKTAFNTKYGLYEWLVMPFGLTNAPSTFMRLMNHVLREYLGKFVVVYFD 857
            YHQIRM  GDEWKTAF TKYGLYEWLVMPFGLTNAPSTFMRLMNH LR +LG+FVVVYFD
Sbjct: 784  YHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHALRAFLGRFVVVYFD 843

Query: 858  DILVYSKSLDDHITHVRNVLTTLRNECLYVNLKKCSFCMEKVNFLGFVVSSNGVEVDEEK 917
            DILVYSKSLD+HI H+  VLT LR E LY NLKKCSFC++KV FLGFVV + G+ VDEEK
Sbjct: 844  DILVYSKSLDEHIDHLHCVLTVLRKEKLYANLKKCSFCLDKVVFLGFVVGAKGIAVDEEK 903

Query: 918  VKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASPLNELVKKNVSFIWEKDQELAF 977
            VKAIK+WPTPK+++EVRSFHGLASFYRRF+K+FST+A+PL E+VKK+V F W  +Q+ AF
Sbjct: 904  VKAIKEWPTPKSITEVRSFHGLASFYRRFVKDFSTLAAPLTEIVKKSVGFKWGSEQDRAF 963

Query: 978  NTLKEKLSSAPLLALPNFESTFEIECDASGVGIGAVLMQNQRPLMFFSEKLTGASLRYPT 1037
              +KE+L  APLLALP+F  TFEIECDASG+GIGAVLMQ +RP+ +FSEKL GA+L YPT
Sbjct: 964  IEIKERLCGAPLLALPDFSKTFEIECDASGIGIGAVLMQEKRPIAYFSEKLNGAALNYPT 1023

Query: 1038 YDKELYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRRHAKWLEFIETFPYVI 1097
            YDKELYALVRAL+TWQHYLWPKEF+IHTDHESLKHL+ Q KLNRRHA+W+EFIETFPYVI
Sbjct: 1024 YDKELYALVRALETWQHYLWPKEFVIHTDHESLKHLKGQGKLNRRHAQWMEFIETFPYVI 1083

Query: 1098 KYKQGKENIVADALSRRYVLLNTLNARLLSFEHIKDLYQHDMFFAPFVESCEKGLIVDNY 1157
            KYKQGKENIVADALSRRY L++TLNA+LL FE++K+LY +D  FA    +CEK      +
Sbjct: 1084 KYKQGKENIVADALSRRYALISTLNAKLLGFEYVKELYVNDDDFASVFAACEKAAF-GKF 1143

Query: 1158 LLLDGFLFRKGKLCIPSCSIRELLVREAHGGGLMAHHGVSKTYDMLSEHFFWPKMRHDVH 1217
              LDG+LFR+ +LC+P+ S+RELLVREAHGGGLM H GV KT D+L EHFFWPKM+ DV 
Sbjct: 1144 YRLDGYLFRENRLCVPNSSMRELLVREAHGGGLMGHFGVRKTLDVLHEHFFWPKMKRDVE 1203

Query: 1218 KVCARCIACKQAKSRLQPHGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRF 1277
            +VC+RC+ C+QAKSR+ PHGLY+PLPVP+ PW+DISMDFVLGLPR+RKG DSIFVVVDRF
Sbjct: 1204 RVCSRCVTCRQAKSRVLPHGLYTPLPVPSAPWVDISMDFVLGLPRSRKGRDSIFVVVDRF 1263

Query: 1278 SKMAHFIPCHKTDDAKHIADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKL 1337
            SKMAHFI CHKTDDA HIADLFFRE+VRLHG+P+SIVSDRDVKFLS+FW+VLWGKLGTKL
Sbjct: 1264 SKMAHFISCHKTDDATHIADLFFREIVRLHGVPRSIVSDRDVKFLSYFWKVLWGKLGTKL 1323

Query: 1338 VYSTTCHPQTDGQTEVVNRTMTAMLRAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPF 1397
            ++STTCHPQTDGQTEVVNRT++ +LR II KNLK WEDCLPFIEFAYNR VHSTT  +PF
Sbjct: 1324 LFSTTCHPQTDGQTEVVNRTLSTLLRTIIQKNLKNWEDCLPFIEFAYNRSVHSTTDFSPF 1383

Query: 1398 EIVYGFNPLTPIDLLPIPSKEFVNFDANAKVEFVHKLHKQVKEQIEKQNSKVATRINKGR 1457
            EIVYGFNPLTP+DLLP+P  E  + D   K E V KLH+ V++ IEK+N + A + NKGR
Sbjct: 1384 EIVYGFNPLTPLDLLPLPVNERTSLDGQKKAEMVKKLHESVRQHIEKKNEQYANKANKGR 1443

Query: 1458 KIVIFKPGDWVWVHFRKERFPTQRKSKLLPRGDGPFQVLERINDNAYKIDLPGKYGVSAT 1517
            + VIF+PGDWVWVH RKERFP +R+SKL PRGDGPFQVLERINDNAYK+DLPG+Y +SAT
Sbjct: 1444 RQVIFEPGDWVWVHMRKERFPARRRSKLHPRGDGPFQVLERINDNAYKLDLPGEYNISAT 1503

Query: 1518 FNVVDLSPFDVGDGLDSRTNPSQEGENDMNHD----QGISIPQGPITRTRAKKLQQTLYS 1555
            FNV DLS FDVGD  DSR+NP +E  ND N        + +P GPITR R+KK+++ L  
Sbjct: 1504 FNVSDLSLFDVGD--DSRSNPFEERGNDENQQALLKDPLHVPVGPITRARSKKIKEALNG 1551

[Close]

BLAST of CmoCh11G012290 vs. ExPASy TrEMBL
Match: A0A2N9F7E8 (Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10964 PE=4 SV=1)

HSP 1 Score: 1944.9 bits (5037), Expect = 0.0e+00
Identity = 954/1569 (60.80%), Postives = 1194/1569 (76.10%), Query Frame = 0


Query: 18   AQQRTMERLIRGIEELTDRIGRLE----------------IQNQARQRIPQPTPSTDTYE 77
            A Q+  ER+     E+ DR+ R +                ++ QAR+    P   +D   
Sbjct: 306  AMQQQFERMDVMFNEIRDRMDRQDAVIAGWREGRPQGGPYVRRQARR---APVDDSDGDH 365

Query: 78   GDNSDHHEDNPHAVGPGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKTD 137
             D  +  ED     G  + RG   GR +   +  + + D  D N+G+IK+K+P F GK D
Sbjct: 366  EDEFEGEEDQASLNGRFVPRGERRGRGF---RTGLRWRDGTDGNLGNIKMKIPSFQGKND 425

Query: 138  PEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWV 197
            PE YL+WEK VE +F CHN+S+EKKV L + +F  YA IWWD+L+ +RRRN E  I++W 
Sbjct: 426  PEAYLEWEKKVELIFECHNYSEEKKVKLAVIEFTDYAIIWWDQLVMNRRRNHERAIETWE 485

Query: 198  EFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARF 257
            E +  MR+RFVP ++ RD+ QKLQ+L QG +SV+DYYKEM+  + R  ++ED EA MARF
Sbjct: 486  EMRAIMRRRFVPSHYYRDLYQKLQSLTQGYRSVDDYYKEMEIALIRANVEEDREATMARF 545

Query: 258  LNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKKDSKNI 317
            LNGLN +IA+  +LQ Y  +E+++H+AIK+ERQ++R+  R  S   P S+++WK + +  
Sbjct: 546  LNGLNRDIANVVELQHYVELEDMVHMAIKVERQLKRKGTR--SFQNPGSSTSWKSNWR-- 605

Query: 318  DYKHRNQEINEKPQAKFEKGESSRTGKEKVENNVRNRDLKCWRCQGVGHYSRDCPNARIM 377
              K     +  K +    + E     K K E+  RNRD+KC+RC GVGH +  CPN R M
Sbjct: 606  --KDEGAVLKSKTEPPKRREEVPSVNKGKTESQTRNRDIKCFRCLGVGHIASQCPNKRTM 665

Query: 378  TIK-EGEIVTDDEAHDD----INEETDESEEFSEEDPTHISLVTRRALNTHIKEDGLD-Q 437
              + +GE+ T+ E+  D    + +  D+  E+  E     SLV RRAL+  +KED ++ Q
Sbjct: 666  IARVDGEVETESESDADQMPMLEDTCDDDVEYPVEGE---SLVARRALSAQVKEDDMEQQ 725

Query: 438  RENLFQTRCLVQSVPCSVVIDSGSCTNVVSSILVKRLNLKTQPHPRPYKLQWLNDCGEVR 497
            REN+F TRC + +  CS++ID GSCTNV S+ LV++LN  T  HP PYKL+WLNDCGE++
Sbjct: 726  RENIFHTRCHINNKVCSMIIDGGSCTNVASTTLVEKLNFPTLKHPMPYKLKWLNDCGEIK 785

Query: 498  VTQQTLVSFTIGKYVDDVLCDVVSMHVGDLLLGRPWQFDRRVMYDGYANRYSFTHNGRKT 557
            VT+Q L+SF+IGKY D+VLCDVV MH G +LLGRPWQFDR+ ++DG+ NRYSF  + R  
Sbjct: 786  VTKQVLISFSIGKYKDEVLCDVVPMHAGHILLGRPWQFDRKAIHDGFKNRYSFVKDSRTV 845

Query: 558  TLIPLSPKDVFIDHCKLEKKR------QEADAKAEIEKESSEKKSLSEKQESNTQPREKK 617
            TL+PL+P+ V+ D  KL+++       +   +K E EKES  KK   +K+E  T   E++
Sbjct: 846  TLVPLTPRQVYEDQVKLKRENELKKNCETESSKKEDEKESERKKESEKKKERVTNTSEQQ 905

Query: 618  ERKAKSVSLYVRSSEARNVLLSNQTILVLMCKGSCYFTNMLNPSLPSDFVVLLQEFEDLF 677
            +   K VS Y ++S+ ++   +NQ I VL+ K +C+ TN L+ SLPS  + LLQE+ED+F
Sbjct: 906  K---KQVSFYAKASDVKSAFYANQPIFVLLYKEACFNTNELDESLPSVVISLLQEYEDVF 965

Query: 678  SEEMPSSLPPLRGIEHKIDFIPGSPIPNRPAYRTNPKEAEEIQRQVSELLAKGYVRESLS 737
              ++PS LPP+RGIEH+IDF+PG+ IPNRPAYR+NP+E +E+QRQV ELLAKG+VRES+S
Sbjct: 966  PNDVPSGLPPIRGIEHQIDFVPGATIPNRPAYRSNPEETKELQRQVEELLAKGHVRESMS 1025

Query: 738  PCSVPVILVPKKDGSWRMCVDCRAINKITIKYRHPIPRLDDMLDELHGCSLFTKIDLKSG 797
            PC+VPV+LVPKKDG+WRMCVDCRAIN IT+KYRHPIPRLDDMLDELHG  +FTKIDLKSG
Sbjct: 1026 PCAVPVLLVPKKDGTWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSCIFTKIDLKSG 1085

Query: 798  YHQIRMHIGDEWKTAFNTKYGLYEWLVMPFGLTNAPSTFMRLMNHVLREYLGKFVVVYFD 857
            YHQIRM  GDEWKTAF TKYGLYEWLVMPFGLTNAPSTFMRLMNH LR +LG+FVVVYFD
Sbjct: 1086 YHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHALRAFLGRFVVVYFD 1145

Query: 858  DILVYSKSLDDHITHVRNVLTTLRNECLYVNLKKCSFCMEKVNFLGFVVSSNGVEVDEEK 917
            DILVYSKSLD+HI H+  VLT LR E LY NLKKCSFC++KV FLGFVV + G+ VDEEK
Sbjct: 1146 DILVYSKSLDEHIDHLHCVLTVLRKEKLYANLKKCSFCLDKVVFLGFVVGAKGIAVDEEK 1205

Query: 918  VKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASPLNELVKKNVSFIWEKDQELAF 977
            VKAIK+WPTPK+++EVRSFHGLASFYRRF+K+FST+A+PL E+VKK+V F W  +Q+ AF
Sbjct: 1206 VKAIKEWPTPKSITEVRSFHGLASFYRRFVKDFSTLAAPLTEIVKKSVGFKWGSEQDRAF 1265

Query: 978  NTLKEKLSSAPLLALPNFESTFEIECDASGVGIGAVLMQNQRPLMFFSEKLTGASLRYPT 1037
              +KE+L  APLLALP+F  TFEIECDASG+GIGAVLMQ +RP+ +FSEKL GA+L YPT
Sbjct: 1266 IEIKERLCGAPLLALPDFSKTFEIECDASGIGIGAVLMQEKRPIAYFSEKLNGAALNYPT 1325

Query: 1038 YDKELYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRRHAKWLEFIETFPYVI 1097
            YDKELYALVRAL+TWQHYLWPKEF+IHTDHESLKHL+ Q KLNRRHA+W+EFIETFPYVI
Sbjct: 1326 YDKELYALVRALETWQHYLWPKEFVIHTDHESLKHLKGQGKLNRRHAQWMEFIETFPYVI 1385

Query: 1098 KYKQGKENIVADALSRRYVLLNTLNARLLSFEHIKDLYQHDMFFAPFVESCEKGLIVDNY 1157
            KYKQGKENIVADALSRRY L++TLNA+LL FE++K+LY +D  FA    +CEK      +
Sbjct: 1386 KYKQGKENIVADALSRRYALISTLNAKLLGFEYVKELYVNDDDFASVFAACEKAAF-GKF 1445

Query: 1158 LLLDGFLFRKGKLCIPSCSIRELLVREAHGGGLMAHHGVSKTYDMLSEHFFWPKMRHDVH 1217
              LDG+LFR+ +LC+P+ S+RELLVREAHGGGLM H GV KT D+L EHFFWPKM+ DV 
Sbjct: 1446 YRLDGYLFRENRLCVPNSSMRELLVREAHGGGLMGHFGVRKTLDVLHEHFFWPKMKRDVE 1505

Query: 1218 KVCARCIACKQAKSRLQPHGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRF 1277
            +VC+RC+ C+QAKSR+ PHGLY+PLPVP+ PW+DISMDFVLGLPR+RKG DSIFVVVDRF
Sbjct: 1506 RVCSRCVTCRQAKSRVLPHGLYTPLPVPSAPWVDISMDFVLGLPRSRKGRDSIFVVVDRF 1565

Query: 1278 SKMAHFIPCHKTDDAKHIADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKL 1337
            SKMAHFI CHKTDDA HIADLFFRE+VRLHG+P+SIVSDRDVKFLS+FW+VLWGKLGTKL
Sbjct: 1566 SKMAHFISCHKTDDATHIADLFFREIVRLHGVPRSIVSDRDVKFLSYFWKVLWGKLGTKL 1625

Query: 1338 VYSTTCHPQTDGQTEVVNRTMTAMLRAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPF 1397
            ++STTCHPQTDGQTEVVNRT++ +LR II KNLK WEDCLPFIEFAYNR VHSTT  +PF
Sbjct: 1626 LFSTTCHPQTDGQTEVVNRTLSTLLRTIIQKNLKNWEDCLPFIEFAYNRSVHSTTDFSPF 1685

Query: 1398 EIVYGFNPLTPIDLLPIPSKEFVNFDANAKVEFVHKLHKQVKEQIEKQNSKVATRINKGR 1457
            EIVYGFNPLTP+DLLP+P  E  + D   K E V KLH+ V++ IEK+N + A + NKGR
Sbjct: 1686 EIVYGFNPLTPLDLLPLPVNERTSLDGQKKAEMVKKLHESVRQHIEKKNEQYANKANKGR 1745

Query: 1458 KIVIFKPGDWVWVHFRKERFPTQRKSKLLPRGDGPFQVLERINDNAYKIDLPGKYGVSAT 1517
            + VIF+PGDWVWVH RKERFP +R+SKL PRGDGPFQVLERINDNAYK+DLPG+Y +SAT
Sbjct: 1746 RQVIFEPGDWVWVHMRKERFPARRRSKLHPRGDGPFQVLERINDNAYKLDLPGEYNISAT 1805

Query: 1518 FNVVDLSPFDVGDGLDSRTNPSQEGENDMNHD----QGISIPQGPITRTRAKKLQQTLYS 1555
            FNV DLS FDVGD  DSR+NP +E  ND N        + +P GPITR R+KK+++ L  
Sbjct: 1806 FNVSDLSLFDVGD--DSRSNPFEERGNDENQQALLKDPLHVPVGPITRARSKKIKEALNG 1853

[Close]

BLAST of CmoCh11G012290 vs. ExPASy TrEMBL
Match: A0A2N9GXH3 (Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32177 PE=4 SV=1)

HSP 1 Score: 1944.9 bits (5037), Expect = 0.0e+00
Identity = 954/1569 (60.80%), Postives = 1194/1569 (76.10%), Query Frame = 0


Query: 18   AQQRTMERLIRGIEELTDRIGRLE----------------IQNQARQRIPQPTPSTDTYE 77
            A Q+  ER+     E+ DR+ R +                ++ QAR+    P   +D   
Sbjct: 4    AMQQQFERMDVMFNEIRDRMDRQDAVIAGWREGRPQGGPYVRRQARR---APVDDSDGDH 63

Query: 78   GDNSDHHEDNPHAVGPGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKTD 137
             D  +  ED     G  + RG   GR +   +  + + D  D N+G+IK+K+P F GK D
Sbjct: 64   EDEFEGEEDQASLNGRFVPRGERRGRGF---RTGLRWRDGTDGNLGNIKMKIPSFQGKND 123

Query: 138  PEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWV 197
            PE YL+WEK VE +F CHN+S+EKKV L + +F  YA IWWD+L+ +RRRN E  I++W 
Sbjct: 124  PEAYLEWEKKVELIFECHNYSEEKKVKLAVIEFTDYAIIWWDQLVMNRRRNHERAIETWE 183

Query: 198  EFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARF 257
            E +  MR+RFVP ++ RD+ QKLQ+L QG +SV+DYYKEM+  + R  ++ED EA MARF
Sbjct: 184  EMRAIMRRRFVPSHYYRDLYQKLQSLTQGYRSVDDYYKEMEIALIRANVEEDREATMARF 243

Query: 258  LNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKKDSKNI 317
            LNGLN +IA+  +LQ Y  +E+++H+AIK+ERQ++R+  R  S   P S+++WK + +  
Sbjct: 244  LNGLNRDIANVVELQHYVELEDMVHMAIKVERQLKRKGTR--SFQNPGSSTSWKSNWR-- 303

Query: 318  DYKHRNQEINEKPQAKFEKGESSRTGKEKVENNVRNRDLKCWRCQGVGHYSRDCPNARIM 377
              K     +  K +    + E     K K E+  RNRD+KC+RC GVGH +  CPN R M
Sbjct: 304  --KDEGAVLKSKTEPPKRREEVPSVNKGKTESQTRNRDIKCFRCLGVGHIASQCPNKRTM 363

Query: 378  TIK-EGEIVTDDEAHDD----INEETDESEEFSEEDPTHISLVTRRALNTHIKEDGLD-Q 437
              + +GE+ T+ E+  D    + +  D+  E+  E     SLV RRAL+  +KED ++ Q
Sbjct: 364  IARVDGEVETESESDADQMPMLEDTCDDDVEYPVEGE---SLVARRALSAQVKEDDMEQQ 423

Query: 438  RENLFQTRCLVQSVPCSVVIDSGSCTNVVSSILVKRLNLKTQPHPRPYKLQWLNDCGEVR 497
            REN+F TRC + +  CS++ID GSCTNV S+ LV++LN  T  HP PYKL+WLNDCGE++
Sbjct: 424  RENIFHTRCHINNKVCSMIIDGGSCTNVASTTLVEKLNFPTLKHPMPYKLKWLNDCGEIK 483

Query: 498  VTQQTLVSFTIGKYVDDVLCDVVSMHVGDLLLGRPWQFDRRVMYDGYANRYSFTHNGRKT 557
            VT+Q L+SF+IGKY D+VLCDVV MH G +LLGRPWQFDR+ ++DG+ NRYSF  + R  
Sbjct: 484  VTKQVLISFSIGKYKDEVLCDVVPMHAGHILLGRPWQFDRKAIHDGFKNRYSFVKDSRTV 543

Query: 558  TLIPLSPKDVFIDHCKLEKKR------QEADAKAEIEKESSEKKSLSEKQESNTQPREKK 617
            TL+PL+P+ V+ D  KL+++       +   +K E EKES  KK   +K+E  T   E++
Sbjct: 544  TLVPLTPRQVYEDQVKLKRENELKKNCETESSKKEDEKESERKKESEKKKERVTNTSEQQ 603

Query: 618  ERKAKSVSLYVRSSEARNVLLSNQTILVLMCKGSCYFTNMLNPSLPSDFVVLLQEFEDLF 677
            +   K VS Y ++S+ ++   +NQ I VL+ K +C+ TN L+ SLPS  + LLQE+ED+F
Sbjct: 604  K---KQVSFYAKASDVKSAFYANQPIFVLLYKEACFNTNELDESLPSVVISLLQEYEDVF 663

Query: 678  SEEMPSSLPPLRGIEHKIDFIPGSPIPNRPAYRTNPKEAEEIQRQVSELLAKGYVRESLS 737
              ++PS LPP+RGIEH+IDF+PG+ IPNRPAYR+NP+E +E+QRQV ELLAKG+VRES+S
Sbjct: 664  PNDVPSGLPPIRGIEHQIDFVPGATIPNRPAYRSNPEETKELQRQVEELLAKGHVRESMS 723

Query: 738  PCSVPVILVPKKDGSWRMCVDCRAINKITIKYRHPIPRLDDMLDELHGCSLFTKIDLKSG 797
            PC+VPV+LVPKKDG+WRMCVDCRAIN IT+KYRHPIPRLDDMLDELHG  +FTKIDLKSG
Sbjct: 724  PCAVPVLLVPKKDGTWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSCIFTKIDLKSG 783

Query: 798  YHQIRMHIGDEWKTAFNTKYGLYEWLVMPFGLTNAPSTFMRLMNHVLREYLGKFVVVYFD 857
            YHQIRM  GDEWKTAF TKYGLYEWLVMPFGLTNAPSTFMRLMNH LR +LG+FVVVYFD
Sbjct: 784  YHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHALRAFLGRFVVVYFD 843

Query: 858  DILVYSKSLDDHITHVRNVLTTLRNECLYVNLKKCSFCMEKVNFLGFVVSSNGVEVDEEK 917
            DILVYSKSLD+HI H+  VLT LR E LY NLKKCSFC++KV FLGFVV + G+ VDEEK
Sbjct: 844  DILVYSKSLDEHIDHLHCVLTVLRKEKLYANLKKCSFCLDKVVFLGFVVGAKGIAVDEEK 903

Query: 918  VKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASPLNELVKKNVSFIWEKDQELAF 977
            VKAIK+WPTPK+++EVRSFHGLASFYRRF+K+FST+A+PL E+VKK+V F W  +Q+ AF
Sbjct: 904  VKAIKEWPTPKSITEVRSFHGLASFYRRFVKDFSTLAAPLTEIVKKSVGFKWGSEQDRAF 963

Query: 978  NTLKEKLSSAPLLALPNFESTFEIECDASGVGIGAVLMQNQRPLMFFSEKLTGASLRYPT 1037
              +KE+L  APLLALP+F  TFEIECDASG+GIGAVLMQ +RP+ +FSEKL GA+L YPT
Sbjct: 964  IEIKERLCGAPLLALPDFSKTFEIECDASGIGIGAVLMQEKRPIAYFSEKLNGAALNYPT 1023

Query: 1038 YDKELYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRRHAKWLEFIETFPYVI 1097
            YDKELYALVRAL+TWQHYLWPKEF+IHTDHESLKHL+ Q KLNRRHA+W+EFIETFPYVI
Sbjct: 1024 YDKELYALVRALETWQHYLWPKEFVIHTDHESLKHLKGQGKLNRRHAQWMEFIETFPYVI 1083

Query: 1098 KYKQGKENIVADALSRRYVLLNTLNARLLSFEHIKDLYQHDMFFAPFVESCEKGLIVDNY 1157
            KYKQGKENIVADALSRRY L++TLNA+LL FE++K+LY +D  FA    +CEK      +
Sbjct: 1084 KYKQGKENIVADALSRRYALISTLNAKLLGFEYVKELYVNDDDFASVFAACEKAAF-GKF 1143

Query: 1158 LLLDGFLFRKGKLCIPSCSIRELLVREAHGGGLMAHHGVSKTYDMLSEHFFWPKMRHDVH 1217
              LDG+LFR+ +LC+P+ S+RELLVREAHGGGLM H GV KT D+L EHFFWPKM+ DV 
Sbjct: 1144 YRLDGYLFRENRLCVPNSSMRELLVREAHGGGLMGHFGVRKTLDVLHEHFFWPKMKRDVE 1203

Query: 1218 KVCARCIACKQAKSRLQPHGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRF 1277
            +VC+RC+ C+QAKSR+ PHGLY+PLPVP+ PW+DISMDFVLGLPR+RKG DSIFVVVDRF
Sbjct: 1204 RVCSRCVTCRQAKSRVLPHGLYTPLPVPSAPWVDISMDFVLGLPRSRKGRDSIFVVVDRF 1263

Query: 1278 SKMAHFIPCHKTDDAKHIADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKL 1337
            SKMAHFI CHKTDDA HIADLFFRE+VRLHG+P+SIVSDRDVKFLS+FW+VLWGKLGTKL
Sbjct: 1264 SKMAHFISCHKTDDATHIADLFFREIVRLHGVPRSIVSDRDVKFLSYFWKVLWGKLGTKL 1323

Query: 1338 VYSTTCHPQTDGQTEVVNRTMTAMLRAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPF 1397
            ++STTCHPQTDGQTEVVNRT++ +LR II KNLK WEDCLPFIEFAYNR VHSTT  +PF
Sbjct: 1324 LFSTTCHPQTDGQTEVVNRTLSTLLRTIIQKNLKNWEDCLPFIEFAYNRSVHSTTDFSPF 1383

Query: 1398 EIVYGFNPLTPIDLLPIPSKEFVNFDANAKVEFVHKLHKQVKEQIEKQNSKVATRINKGR 1457
            EIVYGFNPLTP+DLLP+P  E  + D   K E V KLH+ V++ IEK+N + A + NKGR
Sbjct: 1384 EIVYGFNPLTPLDLLPLPVNERTSLDGQKKAEMVKKLHESVRQHIEKKNEQYANKANKGR 1443

Query: 1458 KIVIFKPGDWVWVHFRKERFPTQRKSKLLPRGDGPFQVLERINDNAYKIDLPGKYGVSAT 1517
            + VIF+PGDWVWVH RKERFP +R+SKL PRGDGPFQVLERINDNAYK+DLPG+Y +SAT
Sbjct: 1444 RQVIFEPGDWVWVHMRKERFPARRRSKLHPRGDGPFQVLERINDNAYKLDLPGEYNISAT 1503

Query: 1518 FNVVDLSPFDVGDGLDSRTNPSQEGENDMNHD----QGISIPQGPITRTRAKKLQQTLYS 1555
            FNV DLS FDVGD  DSR+NP +E  ND N        + +P GPITR R+KK+++ L  
Sbjct: 1504 FNVSDLSLFDVGD--DSRSNPFEERGNDENQQALLKDPLHVPVGPITRARSKKIKEALNG 1551

[Close]

BLAST of CmoCh11G012290 vs. ExPASy TrEMBL
Match: A0A2N9G8J7 (Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26848 PE=4 SV=1)

HSP 1 Score: 1944.1 bits (5035), Expect = 0.0e+00
Identity = 954/1569 (60.80%), Postives = 1194/1569 (76.10%), Query Frame = 0


Query: 18   AQQRTMERLIRGIEELTDRIGRLE----------------IQNQARQRIPQPTPSTDTYE 77
            A Q+  ER+     E+ DR+ R +                ++ QAR+    P   +D   
Sbjct: 4    AMQQQFERMDVMFNEIRDRMDRQDAVIAGWREGRPQGGPYVRRQARR---APVDDSDGDH 63

Query: 78   GDNSDHHEDNPHAVGPGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKTD 137
             D  +  ED     G  + RG   GR +   +  + + D  D N+G+IK+K+P F GK D
Sbjct: 64   EDEFEGEEDQASLNGRFVPRGERRGRGF---RTGLRWRDGTDGNLGNIKMKIPSFQGKND 123

Query: 138  PEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWV 197
            PE YL+WEK VE +F CHN+S+EKKV L + +F  YA IWWD+L+ +RRRN E  I++W 
Sbjct: 124  PEAYLEWEKKVELIFECHNYSEEKKVKLAVIEFTDYAIIWWDQLVMNRRRNHERAIETWE 183

Query: 198  EFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARF 257
            E +  MR+RFVP ++ RD+ QKLQ+L QG +SV+DYYKEM+  + R  ++ED EA MARF
Sbjct: 184  EMRAIMRRRFVPSHYYRDLYQKLQSLTQGYRSVDDYYKEMEIALIRANVEEDREATMARF 243

Query: 258  LNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKKDSKNI 317
            LNGLN +IA+  +LQ Y  +E+++H+AIK+ERQ++R+  R  S   P S+++WK + +  
Sbjct: 244  LNGLNRDIANVVELQHYVELEDMVHMAIKVERQLKRKGTR--SFQNPGSSTSWKSNWR-- 303

Query: 318  DYKHRNQEINEKPQAKFEKGESSRTGKEKVENNVRNRDLKCWRCQGVGHYSRDCPNARIM 377
              K     +  K +    + E     K K E+  RNRD+KC+RC GVGH +  CPN R M
Sbjct: 304  --KDEGAVLKSKTEPPKRREEVPSVNKGKTESQTRNRDIKCFRCLGVGHIASQCPNKRTM 363

Query: 378  TIK-EGEIVTDDEAHDD----INEETDESEEFSEEDPTHISLVTRRALNTHIKEDGLD-Q 437
              + +GE+ T+ E+  D    + +  D+  E+  E     SLV RRAL+  +KED ++ Q
Sbjct: 364  IARVDGEVETESESDADQMPMLEDTCDDDVEYPVEGE---SLVARRALSAQVKEDDMEQQ 423

Query: 438  RENLFQTRCLVQSVPCSVVIDSGSCTNVVSSILVKRLNLKTQPHPRPYKLQWLNDCGEVR 497
            REN+F TRC + +  CS++ID GSCTNV S+ LV++LN  T  HP PYKL+WLNDCGE++
Sbjct: 424  RENIFHTRCHINNKVCSMIIDGGSCTNVASTTLVEKLNFPTLKHPMPYKLKWLNDCGEIK 483

Query: 498  VTQQTLVSFTIGKYVDDVLCDVVSMHVGDLLLGRPWQFDRRVMYDGYANRYSFTHNGRKT 557
            VT+Q L+SF+IGKY D+VLCDVV MH G +LLGRPWQFDR+ ++DG+ NRYSF  + R  
Sbjct: 484  VTKQVLISFSIGKYKDEVLCDVVPMHAGHILLGRPWQFDRKAIHDGFKNRYSFVKDSRTV 543

Query: 558  TLIPLSPKDVFIDHCKLEKKR------QEADAKAEIEKESSEKKSLSEKQESNTQPREKK 617
            TLIPL+P+ V+ D  KL+++       +   +K E EKES  KK   +K+E  T   E++
Sbjct: 544  TLIPLTPRQVYEDQVKLKRENELKKNCETESSKKEDEKESERKKESEKKKERVTNTSEQQ 603

Query: 618  ERKAKSVSLYVRSSEARNVLLSNQTILVLMCKGSCYFTNMLNPSLPSDFVVLLQEFEDLF 677
            +   K VS Y ++S+ ++   +NQ I VL+ K +C+ TN L+ SLPS  + LLQE+ED+F
Sbjct: 604  K---KQVSFYAKASDVKSAFYANQPIFVLLYKEACFNTNELDESLPSVVISLLQEYEDVF 663

Query: 678  SEEMPSSLPPLRGIEHKIDFIPGSPIPNRPAYRTNPKEAEEIQRQVSELLAKGYVRESLS 737
              ++PS LPP+RGIEH+IDF+PG+ IPNRPAYR+NP+E +E+QRQV ELLAKG+VRES+S
Sbjct: 664  PNDVPSGLPPIRGIEHQIDFVPGATIPNRPAYRSNPEETKELQRQVEELLAKGHVRESMS 723

Query: 738  PCSVPVILVPKKDGSWRMCVDCRAINKITIKYRHPIPRLDDMLDELHGCSLFTKIDLKSG 797
            PC+VPV+LVPKKDG+WRMCVDCRAIN IT+KYRHPIPRLDDMLDELHG  +FTKIDLKSG
Sbjct: 724  PCAVPVLLVPKKDGTWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSCIFTKIDLKSG 783

Query: 798  YHQIRMHIGDEWKTAFNTKYGLYEWLVMPFGLTNAPSTFMRLMNHVLREYLGKFVVVYFD 857
            YHQIRM  GDEWKTAF TKYGLYEWLVMPFGLTNAPSTFMRLMNH LR +LG+FVVVYFD
Sbjct: 784  YHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHALRAFLGRFVVVYFD 843

Query: 858  DILVYSKSLDDHITHVRNVLTTLRNECLYVNLKKCSFCMEKVNFLGFVVSSNGVEVDEEK 917
            DILVYSKSLD+HI H+  VLT LR E LY NLKKCSFC++KV FLGFVV + G+ VDEEK
Sbjct: 844  DILVYSKSLDEHIDHLHCVLTVLRKEKLYANLKKCSFCLDKVVFLGFVVGAKGIAVDEEK 903

Query: 918  VKAIKDWPTPKNVSEVRSFHGLASFYRRFIKNFSTIASPLNELVKKNVSFIWEKDQELAF 977
            VKAIK+WPTPK+++EVRSFHGLASFYRRF+K+FST+A+PL E+VKK+V F W  +Q+ AF
Sbjct: 904  VKAIKEWPTPKSITEVRSFHGLASFYRRFVKDFSTLAAPLTEIVKKSVGFKWGSEQDRAF 963

Query: 978  NTLKEKLSSAPLLALPNFESTFEIECDASGVGIGAVLMQNQRPLMFFSEKLTGASLRYPT 1037
              +KE+L  APLLALP+F  TFEIECDASG+GIGAVLMQ +RP+ +FSEKL GA L YPT
Sbjct: 964  IEIKERLCGAPLLALPDFSKTFEIECDASGIGIGAVLMQEKRPIAYFSEKLNGAVLNYPT 1023

Query: 1038 YDKELYALVRALQTWQHYLWPKEFIIHTDHESLKHLRVQNKLNRRHAKWLEFIETFPYVI 1097
            YDKELYALVRAL+TWQHYLWPKEF+IHTDHESLKHL+ Q KLNRRHA+W+EFIETFPYVI
Sbjct: 1024 YDKELYALVRALETWQHYLWPKEFVIHTDHESLKHLKGQGKLNRRHAQWMEFIETFPYVI 1083

Query: 1098 KYKQGKENIVADALSRRYVLLNTLNARLLSFEHIKDLYQHDMFFAPFVESCEKGLIVDNY 1157
            KYKQGKENIVADALSRRY L++TLNA+LL FE++K+LY +D  FA    +CEK      +
Sbjct: 1084 KYKQGKENIVADALSRRYALISTLNAKLLGFEYVKELYVNDDDFASVFAACEKAAF-GKF 1143

Query: 1158 LLLDGFLFRKGKLCIPSCSIRELLVREAHGGGLMAHHGVSKTYDMLSEHFFWPKMRHDVH 1217
              +DG+LFR+ +LC+P+ S+RELLVREAHGGGLM H GV KT D+L EHFFWPKM+ DV 
Sbjct: 1144 YRIDGYLFRENRLCVPNSSMRELLVREAHGGGLMGHFGVRKTLDVLHEHFFWPKMKRDVE 1203

Query: 1218 KVCARCIACKQAKSRLQPHGLYSPLPVPNGPWIDISMDFVLGLPRTRKGYDSIFVVVDRF 1277
            +VC+RC+ C+QAKSR+ PHGLY+PLPVP+ PW+DISMDFVLGLPR+RKG DSIFVVVDRF
Sbjct: 1204 RVCSRCVTCRQAKSRVLPHGLYTPLPVPSAPWVDISMDFVLGLPRSRKGRDSIFVVVDRF 1263

Query: 1278 SKMAHFIPCHKTDDAKHIADLFFREVVRLHGIPKSIVSDRDVKFLSHFWRVLWGKLGTKL 1337
            SKMAHFI CHKTDDA HIADLFFRE+VRLHG+P+SIVSDRDVKFLS+FW+VLWGKLGTKL
Sbjct: 1264 SKMAHFISCHKTDDATHIADLFFREIVRLHGVPRSIVSDRDVKFLSYFWKVLWGKLGTKL 1323

Query: 1338 VYSTTCHPQTDGQTEVVNRTMTAMLRAIIDKNLKTWEDCLPFIEFAYNRVVHSTTKCTPF 1397
            ++STTCHPQTDGQTEVVNRT++ +LR II KNLK WEDCLPFIEFAYNR VHSTT+ +PF
Sbjct: 1324 LFSTTCHPQTDGQTEVVNRTLSTLLRTIIQKNLKNWEDCLPFIEFAYNRSVHSTTEFSPF 1383

Query: 1398 EIVYGFNPLTPIDLLPIPSKEFVNFDANAKVEFVHKLHKQVKEQIEKQNSKVATRINKGR 1457
            EIVYGFNPLTP+DLLP+P  E  + D   K E V KLH+ V++ IEK+N + A + NKGR
Sbjct: 1384 EIVYGFNPLTPLDLLPLPVNERTSLDGQKKAEMVKKLHESVRQHIEKKNEQYANKANKGR 1443

Query: 1458 KIVIFKPGDWVWVHFRKERFPTQRKSKLLPRGDGPFQVLERINDNAYKIDLPGKYGVSAT 1517
            + VIF+PGDWVWVH RKERFP +R+SKL PRGDGPFQVLERINDNAYK+DLPG+Y +SAT
Sbjct: 1444 RQVIFQPGDWVWVHMRKERFPARRRSKLHPRGDGPFQVLERINDNAYKLDLPGEYNISAT 1503

Query: 1518 FNVVDLSPFDVGDGLDSRTNPSQEGENDMNHD----QGISIPQGPITRTRAKKLQQTLYS 1555
            FNV DLS FDVGD  DSR+NP +E  ND N        + +P GPITR R+KK+++ L  
Sbjct: 1504 FNVSDLSLFDVGD--DSRSNPFEERGNDENQQALLKDPLHVPVGPITRARSKKIKEALNG 1551

[Close]

BLAST of CmoCh11G012290 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-22
Identity = 54/132 (40.91%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 842 ITHVRNVLTTLRNECLYVNLKKCSFCMEKVNFLG--FVVSSNGVEVDEEKVKAIKDWPTP 901
           + H+  VL        Y N KKC+F   ++ +LG   ++S  GV  D  K++A+  WP P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 902 KNVSEVRSFHGLASFYRRFIKNFSTIASPLNELVKKNVSFIWEKDQELAFNTLKEKLSSA 961
           KN +E+R F GL  +YRRF+KN+  I  PL EL+KKN S  W +   LAF  LK  +++ 
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTL 120

Query: 962 PLLALPNFESTF 972
           P+LALP+ +  F
Sbjct: 121 PVLALPDLKLPF 131

The following BLAST results are available for this feature:

BLAST of CmoCh11G012290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.7e-163	37.68	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	8.4e-163	38.00	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	4.2e-146	34.11	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.2e-146	34.11	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	4.2e-146	34.11	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmoCh11G012290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9HBD3	0.0e+00	61.11	Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12373 PE=4 SV=1	[more]
A0A2N9G0F9	0.0e+00	60.87	Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20920 PE=4 SV=1	[more]
A0A2N9F7E8	0.0e+00	60.80	Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10964 PE=4 SV=1	[more]
A0A2N9GXH3	0.0e+00	60.80	Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32177 PE=4 SV=1	[more]
A0A2N9G8J7	0.0e+00	60.80	Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26848 PE=4 SV=1	[more]

BLAST of CmoCh11G012290 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.8e-22	40.91	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..43
None	No IPR available	COILS	Coil	Coil	coord: 558..578
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 663..803 e-value: 5.0E-92 score: 309.0
None	No IPR available	GENE3D	1.10.340.70		coord: 1121..1202 e-value: 1.4E-17 score: 65.7
None	No IPR available	GENE3D	4.10.60.10		coord: 316..376 e-value: 2.8E-5 score: 25.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 279..332
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 297..332
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 561..596
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..296
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1501..1531
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1505..1531
None	No IPR available	PANTHER	PTHR24559:SF327	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED	coord: 635..1284
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 635..1284
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 153..256
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 341..544
None	No IPR available	PANTHER	PTHR24559:SF327	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED	coord: 341..544 coord: 153..256
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 972..1087 e-value: 3.24265E-54 score: 183.078
None	No IPR available	CDD	cd01647	RT_LTR	coord: 702..878 e-value: 7.94835E-87 score: 278.71
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 422..511 e-value: 1.34988E-17 score: 77.3768
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 341..357 e-value: 9.9E-5 score: 31.7
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 341..357 e-value: 2.0E-5 score: 24.5
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 341..357 score: 9.834029
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1213..1421 e-value: 2.7E-50 score: 172.4
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 718..877 e-value: 1.4E-36 score: 126.1
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 699..878 score: 14.533341
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 1148..1204 e-value: 4.7E-16 score: 58.6
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 743..878 e-value: 5.0E-92 score: 309.0
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 887..973 e-value: 8.2E-31 score: 107.9
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 967..1065 e-value: 5.5E-31 score: 107.0
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 153..247 e-value: 6.8E-20 score: 71.2
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 405..538 e-value: 1.6E-11 score: 46.0
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 418..511
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1216..1376 score: 18.870842
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 328..358
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1213..1374
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 641..1072

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012290.1	CmoCh11G012290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding