CmoCh11G012280 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G012280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr11: 7436440 .. 7441935 (-)
RNA-Seq Expression	CmoCh11G012280
Synteny	CmoCh11G012280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACACTGCGCCCTCTAGGAAAGGCTCAACTCAATCTCAACATGGTTCTTTCTCTGTAACTGGACGAATTCGGTTTTAGAACTTCCCTCTCTCTTTGGCTATTGATGACAAGTCTTGACTTCAGGTGGTTCCACCACTAGGGAAAAAGCACTGTTGTGGTTCCGGCCAAGCAAGCATCTCAATACAATACCCAACTTGACTTTCTGGCCCACTTCATGACCGATAGTTTCTCTTCCGAACCGGTTAAAGACCTAGCCATGAGACCAACTCCGGCTCCAGGCAGTCGTCAAAGAGAAATTCCCAGATGCTATGCTCTTCGGATTATGCAATTTTCTGTGTAATATACATAGCCTATTACCCACAAAACCTTATTACCCACAATTCTTATTACCAGGTGTGGCTAATCGACTGTTTGCTGTGTAATACACATTGTTTATTACCCACAAAACCTTATAACCCACAAAGCTTATTACCCACAATTCTTATTACCAGGTGTGGCTAATCGACTGTTTACTGTGTAATACACATTATTTATTACCCACAAAACCTTATAACCCACAAAGCTTATTACCCACAATTCGTATTACCCCTCATCAGGAAAATGAAATCGGAGAAAGAAAGAAAAAGAAAGAGGCTTTCCTTGCAAGAGCTAATACTAATTCATAATAAAATATATAATATGGGAAAAGCCTCTTTCTTTTTCTTTCTTTCTCCGATTTCATTTTCCTGTCTCCCGGTAATAGGAATTGTGGGTAATAGGCTATGTATATTACACAGAAAACCAATAATCCGCCACTCGAAAAACACCGAAGGTGGGTTATAAGGAATTGTGGGTAATTAGCAATGTATATTACAGGCCTATTCAATGAATTGACTCTACGATAGATATTACCTGACCTGATATAGTCTCGTAAATGAATGAAATGAAAGAGAAGCTTATGAACAGGAAGTCAAGATGAAACGGAACTCCGGAACCGGACCCTGCCCCTCTCCCTTCGGTCTCGCCCTTTGGCCGAGCTCTTTTCACCCCTCAGCGTTGCTTACCTAATAGATGCGAGATTACCGGTCTTAGGAGGAGAGGCGGGCAGAAGGATTTCCCGCTAGCCTATGAGCATTCATTTAATATCTAATAATGATCTCTTAAGTAAGAGAATAGATAGCGAACGGGCCACATAACTATACTAAATGATAACGTAGTCCTCTCCCTTTATGGCTTTATTGGAAGAACTCAATAAATACGGCATTGATATTCATTCCTATTCCTAAGAGTAGCGAAAGGCTTCTAGCCCGTGTGTGTATGCTCGTGGCAGGGATGCCCCCTTCCCCTTAAACATGGCTTCATTGATACCGGGCGCAATTACTGTCATGAACTGGAATGAGCGATCATAATTGGGCTCTAGTAAATAACTCAAACTAAAAGGGAGAATGAGTCAGGCAGGGAAGAACCAAGCAAAGCAAGCAAGATCATTCAATTTCCTTTGGTATAAGGGTAGTAAACGATACAGGGATAGATTAGAGAATCCATTTAAGAAAAAGATAATTCTATCTATAAAGGGTTGATAAGATTCAACAAGGTCCATTGAGCGCCTCTTGACTATGGCATAATAGATACGAACACTTGTCCCGACCGGATACACTTCCAGATCATAATTGGGCTCTAGTAAATAACTCAAACTAAAATGGGAGATAGTAGAGCAGAGAAAGTACCACACGAAAAGTGTTACCTTTAGAGTACTACTCTTCTTAAACAACTAAAAATACTACGAAATTCTAAAAAGGACCACTTTCTCAACATATTGTCCTTTTAAAACACCAACCAATAAATAATTGCGACTACTCAACTTACTCATCACACACACTTACACAAACTCGGAACAAAGAATGCCTTACTCCTTAACACCTTCCTATATTTCTGACTCCGATGGTTTCCTCCCCATCCGAGACAGGATCATGCTTGGGGAGTGGGGCACCTGCGGTATGACGTTTAGTAACACAACACTATACAATAAATCCTACACTTTACGAGTACAACCTAACACAAGTACTCGACTACTATCTCTCTTTCTCTACTATCAAATAATCTTGTGGTCCAGTTTCATGGGAAGTGGCGCATTAGTTATATCAACTTAATGAAATAATCCCACGATAGACGGAACACTGAAAGATAGACCGGTGGTGACCTCTATTTACGTCGTTCTCCAGATAAGGTAATTGGAACCGCAGTTCCATACTCTGATCAAATGTTGGAGGAGACTGGATCACCACATGGTTGAGACACCTGGAAAAAATGAACAGGCGCTATAATTTTTGCCGGAAGAGTTATACTGTCTTAACCAAGGATGAGAATGAGAAGATAACGGGTGATATTCCACCGACATAATCCGTTGGAGTGGGCTCCCTTAGGTCTTTGTATTCCTCTTGACAGACCTTCGGGTGACGAGATCGGGTGAAATAGCACTGAATGAATCTCGCTTTAGGATAGGGGTTTATACAATCGGTATTTGGCGTGTGGCGGATCCTCTTTTGGAGTGGCTACCCATCGTTTTTGGTGTGGCGGATACTCATTTTGGTGTGCCTACCCATCGTTTTTGGTGTGGCGGATTATTGCATTTCTGTGTAATATACATAGCATATTACCCATAAAACCTTATAACCCACCTTCGGTGTTTTTCGAGTGGCGGATTATGCAATTTTCTGTGTAATATACATAGCCTATTACCCACAATTCTTATTACCAGGTGTGGCTAATCGACTGTTTGCTGTGTAATACACATTGTTTATTACCCACAAAACCTTATAACCCACAAAGCTAATAACCCACAATTCTTATTACCAGGTGTGGCTAATCGACTGTTTGCTGTGTAATACACATTATTTATTACCCACAAAACCGTATAACCCACAAAGCTTATTACCCACAATTCTTATTACCCCTCGTCAGGAAAATGAAATCGGAGAAAGAAAGAAAAAGAAAGAGGCTTTCCTTGCAAGAGCTGATACTAATTCATAATAAAATATATAATATGGGGAAAGCCTCTTTCTTTTTCTTTCTTTCCTGTCTCCCGGTAATAGGAATTGTGGGTAATAGGCAATGTATATTACACAGAAAATTGCATAATCCGCCACCACACCAAAAAGAGCGATGGGTAGCCACTCCAAAAGAGGATCCTCCAAATACCGATTGTACATGGGTCCAGCTGCCTTATAATGAACGTTAATTTGATCTTGATCCTTGTAGAGTGAAAAAGGGACTGCACTGCATCCGCACGAACCTCCTGATAATATCCATAAATGACTTGTTTTTGGTAAGAGATGGACATTACTATATGTAAATTCGGGTGCATGGTACACATCAGTACTCCAATGCATTTCTCCCTCTGAGTCAGAATAAATATGTTTTCGAACCCTCTCTTTTAAATTAAGAGTGTATGTTCCCGCGCGAATCTCAGCAATCACTTGTTCTGATTCTACATATTGATCGTTTTGAACTAAAAGTAAACTTTTGGGTGGAATAGTGACGTTATGTATAATATCCTCACTCTCAATAGTCAGATACAAGTCTATATAACATAAAAACGCAGGATGCCCATGACGTGTACGTGTGGGATGAACCAAATCCTCATTGAATTTTATTTTTCCATTAGAAGGAGCTCGTATATGTTCTGCAGTCCCCCCTGTGAATACTCCGCCGGTATGAAAAGTTCTTAATGTTAGTTGAGTAGACCAGAAGGTCAAGGATTTCATTTTCCTGTCTCCCGGTAATAGGAATTGTGGGTAATAGGCTATGAATTAGCTACTGAACCTAATGAAAGAATAGTGATAGTGATTGAGTTCCATCAGGATCATTCTTCGATAGTCTTGACTTTCTTTTTCAGGATCAAGAGCAGTTGAAGAATCCAGAGGGTCAGGAGGTAAGTTGCAGTGAGTCTTGCAAGCGGAATCAAAGGAATGAACGAGGTCAATCAAACACCGATTCCATTCCATTCTATTCCATTTATTTACTACCTTATGAAATGAAAGAAAGAAGACTAGGAGAAAAGCAACTCGACCGTAAAATAGCTTTACCCATTTAGAAAGAATGAATGAATCTTGCTTTCTGCTTTACCTTGTTTACAGGCAGGAGAGTAAGTGCCATCCGTCTCATTCTTGTTGAGTCTTAGTTTACAGTTAAAGAATCCATAGGCGAAAGAAGGTGATTGAGTTACAGGATTGAATAGTCAGTCAAAAGAGGAATACAAAGACCTAAGGGAGCCCACTCCAACGGATTATGTCGGTGGAATATCACCCGTTATCTTCTCATTCTCATCCTTGGTTAAGACAGTATAACTCTTCCGGCAAAAATTATAGCGCCTGTTCATTTTTTCCAGGTGTCTCAACCATGTGGTGATCCAGTCTCCTCCAGCATTTGATCTCGTATTTTAATGCATGTATTTAATTTATTCGGAGCTATTAGAGCGGGATCCACTTTTTGGGGAATATGGGTCGAAGCAATAACAAGAATATTTCTAGTGGAACATCTTTCACAATCCCTGGAGAGATAGTTCACTAATAGACCAAGGGATAAGTAATTCGACGCATTCACATCCAGATCATGAATGTTTGGAATCCATATTATGCAAGGAGACATTGCTTTTGCTAATTCGAATTGAAGGGTGATATAAAATCGGTCTATTTCCGGCATCATATCCATAGTTAGCGGCGCATTCATCATAGTTAGAAGCTCCAGCTCCGTATCAAGGTCACGGTCGATATCGTCACTATCATCAATATCGCCACTATCATCAATATCGTCACTATCATCCATATCGTCACTATCATCAATAAGAAAACCCTTAGGGTTGTTATCCGGGAACTTGTTCAGAAATACTGTAATGAAAGGAAGATAGGAGTTTGTCGCTAGGTATTTGACCAAATAGGATCGTCCAGTTCCTATAGAACCTATCACTAAAATACCCCTACGGGGGGATAGGGCTAAGCGGAGCGAAAAGGGTTTTCCATGAGATGGGAAATTCAAACTATTAGCCCCACACGAGGTTTGTGAATAAGTGATTGTCTGATAATGAGCAAGGAATGTCCGTCTTTCTGCTAAACAGGATGTATTGAACTCATAATTCATTAGATACTTTTTATGAATGTCAACTAAGTATCGTAAGTAAATTACTCCCGGTTGTTCAATCATTTGATAACCAGAGTCATTCTTTGATAAATGATCACTATGAGTCAGACTCAATAGAATTTGATCAATCCTTTTTTCTGTCGTTAAGGTGGAGAACTGAACCAAGAATTCTCTTTCTTTATCATCAATCCAATCACTGTTCGAGACCCAGGATTCTATTTTATCATCAATCCAATCACCGTTCCCATTTTTGATTTTTCTTATCAATGAATATATCTCTTTACTTGTATGACTTAGATGTCTCGTATTTCTCGAAAAAGCGATTCGATTGATGGGATTGAGATTGATATTCCAATCTTTCTTCTTCGAACGTATTGA

mRNA sequence

ATGCACACTGCGCCCTCTAGGAAAGGCTCAACTCAATCTCAACATGGAGCTCGTATATGTTCTGCAGTCCCCCCTGTGAATACTCCGCCGGATCAAGAGCAGTTGAAGAATCCAGAGGGTCAGGAGAAGCTCCAGCTCCGTATCAAGGTCACGGTCGATATCGTCACTATCATCAATATCGCCACTATCATCAATATCGTCACTATCATCCATATCGTCACTATCATCAATAAGAAAACCCTTAGGGTTGTTATCCGGGAACTTGTTCAGAAATACTGTAATGAAAGGAAGATAGGAATGTCTCGTATTTCTCGAAAAAGCGATTCGATTGATGGGATTGAGATTGATATTCCAATCTTTCTTCTTCGAACGTATTGA

Coding sequence (CDS)

ATGCACACTGCGCCCTCTAGGAAAGGCTCAACTCAATCTCAACATGGAGCTCGTATATGTTCTGCAGTCCCCCCTGTGAATACTCCGCCGGATCAAGAGCAGTTGAAGAATCCAGAGGGTCAGGAGAAGCTCCAGCTCCGTATCAAGGTCACGGTCGATATCGTCACTATCATCAATATCGCCACTATCATCAATATCGTCACTATCATCCATATCGTCACTATCATCAATAAGAAAACCCTTAGGGTTGTTATCCGGGAACTTGTTCAGAAATACTGTAATGAAAGGAAGATAGGAATGTCTCGTATTTCTCGAAAAAGCGATTCGATTGATGGGATTGAGATTGATATTCCAATCTTTCTTCTTCGAACGTATTGA

Protein sequence

MHTAPSRKGSTQSQHGARICSAVPPVNTPPDQEQLKNPEGQEKLQLRIKVTVDIVTIINIATIINIVTIIHIVTIINKKTLRVVIRELVQKYCNERKIGMSRISRKSDSIDGIEIDIPIFLLRTY

Homology

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BLAST of CmoCh11G012280 vs. ExPASy TrEMBL
Match: A0A371IH69 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_00634 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.5e-13
Identity = 65/120 (54.17%), Postives = 67/120 (55.83%), Query Frame = 0


Query: 43  KLQLRIKVTVDIVTIINIATIINIVTIIHIVTIINKKTLRVVIRELVQKYCNERKIG--- 102
           KLQL IKVTVDIVTIIN            IVTIIN KTLR+VI+ELVQKYCNER IG   
Sbjct: 119 KLQLHIKVTVDIVTIIN------------IVTIINNKTLRLVIQELVQKYCNERNIGDRP 178

Query: 103 -----------------------------MSRISRKSDSIDGI-----EID-IPIFLLRT 125
                                        MSRISRKSDSIDGI     EID IPIFLLRT
Sbjct: 179 VPIEPITKIPLGGGRAKRSEKDCFTCMTYMSRISRKSDSIDGIWYDTYEIDEIPIFLLRT 226

The following BLAST results are available for this feature:

BLAST of CmoCh11G012280 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G012280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371IH69	8.5e-13	54.17	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_00634 P...	[more]

BLAST of CmoCh11G012280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012280.1	CmoCh11G012280.1	mRNA