CmoCh11G012260 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G012260
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L23, chloroplastic
LocationCmo_Chr11: 7431661 .. 7435822 (-)
RNA-Seq ExpressionCmoCh11G012260
SyntenyCmoCh11G012260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATATATGTTTGGAATAGATTCCATTTTGAGAGAGTTGAAAAAGCACTATCTCGTTGAAAGGTTCTATACATCTGCCCTTTCTCAAGGCATTTCTTTAGACAAAGACTCCGTTTTTTCCTCTTTTCGGATGGTAAATATTTCTCAGAACATGGAGTGTGAATCAAACCCATGTTTGAATTGAAATTGAGATACTGATGCAAGTTCTTCCCCTCTGAATCAGATAGATTCATATCTGAAAGAGGTTGACAATAAGTTCTTTCAAAATTGACTATTTGTCCCTCTGTTAGAGGTGTTCCAGAAATGTCTGCGATCGAGTAAATAGCTCGACGAACGAATGGATCGGATCGAATTGGAAAATGGAAAGATTTGTACAAGTTATACCTTTCGTCACCACTTTGTGGAAAATCGTTAGGTATGAATATGTTAGATACCTGTGACTCGATTGGTGAAATAGTATCTCTCTCCAAAAAAGCATGTTTTTTTTTACCGCCGCACAAAGAAAATATTTTGTTGCGAATGAACAAGATATTGAGGAATTGTCCATACGTAAAATCATAATTATTGATACGGGCCTTTTCCACATAATCCACATAAAAAGGGAATCTTTTGTTACAATAGAAGCAGAAGTGATGTGGATTATTCAAGAATCGAAGTCGAGTTGCTTTATAAAAAGAAGATATCAATGAACTTCTATGAAATGGTTTCACGGGATTTAGCCAATTGTCTTGATCGTGGGATATCATTGAGAAATAGGAATCCGTGTTATCAAAGGATTTCCTGCGATTATTTCTCGTATGGAATGAGTCAATCATCCACTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCATTGATCAAGAATTTCGATTTTTGGGAAGTATCATGATCATCCAATAAGAAGGGTTTCAATTTTTTCAAATGAACGATTTGAAGACCTATTGATTCTAACAACTGATTGCAGAGTTGATCATTCGGACCTTTCAATTCATAGATGTGGATCTCGGACCTATGAATGGGGATATTCCCGAAACTCACAAAGAAAAAAGGAAGTGAGTTAGACAAAAAGAGAAGAAACTTGGACAAAAAGAAACGAAGTGACTTAGACAAATCTTTTTTATCGATAACCTCAGACCAATCAATCGAATATTGATTAATACGTAATCGAGCGAACACTACTTGAAAATGAAAATGGCTCTTCTGCTCAGAAATGAAATGTTCCTGGAAATTCTTGCTCCCATTGGACCATTTGTATCTATATGCATTAGGATCCCGATTCATGGATCTCTCGGTTCGAGAAATCAAAATAAGAGGATCGAACCATTTCTTCTGACCCTTTTTCAAATTTGATAAATGTTGGTTGATCGTATATTTCATTATAGTTCTATGATTCAGAGTATCATTTCCTATTTGATCCCTTTGAATTCCATATTCGAAGTTGCGATCGGATCTATTCATTAAAAAGAATCGATTCAATACATTTCTTATGTACCCATAGGTGTTATATTGGATTTGAATCAGATTTCGGATCAATCTATATTGATTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCACTATTTTTTGTTTTGGATCTTCCAAATCATTCCCGGGGGAGGTCCGGACCCATTTTTTTTCTGATCCTTCGATAAAAAGATTCATTCTCTTTATAAAAAATAGGAGGTAGAATCAATAAATATTTCTTTTTCGATTCATCCCTGGAGTTGAATACCTCATTCAAGAATTGTTTTTGATCCAATCCGTAGGAATCAATAGAAAAGGAAAATCCCTTATGATACACCAGATCCGACTCGGTTATTGATAGAGTGAATAGATCTGCCATTTCTTGAAATCTCTCTTCTGATTCAAAATCGTGGTGTAACGTGTATCCCCTCCTGTTCCGGTCATGGAATAGATGAAATAAATAAATAAATGGATTTTTGTTCAAGAATGAAATCTTATTGGAACTGTCCATATCCAGTTCATCCTTCGGAACCATATCACATCCCGGATCTGATGAAATAGGATGAATTGAGACGGTATTTTATAAATACGCAATTATCTTGAATATATTAACTATTTCTTTATTTTCCGATTGCCTGGAAGGGACAAAAGAAACATCTTGTTCTTTCTTCAACAATTTCTGATCTCTAGTGAACCTCACAAAAGAAACATCTTGTTCTTTCTTCAACAATTTCTGATCTCTAGTGAACCTCTCAATAGGATTCGAACCCATATGAAGTTCTGACCATCTGTCAGAGAAAAAAGAACGAATGGATCTTGTAGGATTCCCGAGAAATTCTTCGATTTCTTCCGGAAGCGGATGATTATTCATCNTGAAGTTCTGACCATCTGTCAGAGAAAAAAGAACGAATGGATCTTGTAGGATTCCCGAGAAATTCTTTGATTTCTTCCGGAAGCGGATGATTATTCATCTGCTTCTCACGTTTCGTGAATAGCCGGGACATTGAGGAATATCCAGAAAAGCATTTAGGGAATCGGTCTGATTCTATCTCTGTTCGTTCCGTTTGAAGAAAGGAAGGATCCCAAAGAATCGATCTTTCTTTTAGTTGTTGAATCTCTCTTTGATTGATCAATGTGTGATATTCTGAATCCTCATTACTAATGGAATCGAAATGATCTCTGGATTGATTAGAAGATCCTTTCAATTGGCTAGAATCTGTTACTTGAACGAAACTAGATCTTGTGGAATCATATTGAATATTTGACAAGACATTCCGTACCTTGCTAAAAAACTGATCCTTGTTTACCAACCACACATTGTCTAACCAAATCCAATTCTCTCTCGATATGTTCCTCAAAAAATCCGATTCGTGCGGATTCTTCCCCCAACTAAAGAAGAGATCTTGGCGGAATTGCCACATATGAAATTGAGCACAATTTTGCAAAGAAATAGCCCACTTGTTTCTCGAGAAGAGATGGGAAACATGCTCAATATCATTTGATTGAATAGTTGACCTAGCTCCTTGTTGTTTGAAGAAGCCCTCCACTTCAATTGGTATTTTTTCACGAAAAGCAAACATGAGATAACAAATCCAGTCTTTCACTAAGATTTCGAATAGCTGTCCCGAATTCAAGTTGATTATGTTTTGCCTCTTCCTCGGAGAAAGACGATCAAACAATTCCCAATCATGGTCCTTGCGGATCTGATCATCCATATAATATACAAAAAGAAACTCCAGATATTTGATATCTTTCTCTTTGAATGAGATCTCAATTCCAGCGACGGTTTCATTAGATATCTTACAACTGGAATCCCTCTTTTTTCCGATCCAGTTCCTCCACCACCGCGAACCCCAGTTAGATTCAGGCATGATACACTTTTTAGTTATTGGGAGAACCCAAGTACTCTCTTTCGGATCCAGGAAACAGCTCTCAAAGATCTTTTTTCCTTTTGGAAGATACAGGAGCGAAACAATCAACCTATTGATATTGGAAGAACCAAAAGGTTCTTCCAATGTATCATTTCTGAGTCCAATGAAATTCATAGGTATAGGAAGAAATCCTGTCAAATAGAGATTTTTTCTTTCGACCATCTTTCGATTGTTAATACGATATATAAGGACCGCTACTACAAATAGTACTACACCCTTGATCGTGAAATATCGATTGCTTGTTGAACCCTGTGAATTGCGTGAAAGTAGGATACTCCAAATTCGGGAGTCTAAGAGTTTTATAAAACGTTCTTGATGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCCATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATTCGAAAATCCAGGATTTGAATTGATGGCCGTTCATTAATTAAGTCCTCCTAAATTGCATTGATTTATACTAAAGATTTCATTTTAATTGGAATTGGCTCTGTATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTACTCGGTTATTGGGGAAAAATCAATATACTTTTAATGTCGAATCGGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAG

mRNA sequence

ATGGCATATATGTTTGGAATAGATTCCATTTTGAGAGAGTTGAAAAAGCACTATCTCGTTGAAAGGTTCTATACATCTGCCCTTTCTCAAGGCATTTCTTTAGACAAAGACTCCGTTTTTTCCTCTTTTCGGATGAGGTGTTCCAGAAATGTCTGCGATCGAGTAAATAGCTCGACGAACGAATGGATCGGATCGAATTGGAAAATGGAAAGATTTGTACAAGTTATACCTTTCGTCACCACTTTGTGGAAAATCGTTAGAAGCAGAAGTGATGTGGATTATTCAAGAATCGAAGTCGAGTTGCTTTATAAAAAGAAGATATCAATGAACTTCTATGAAATGGTTTCACGGGATTTAGCCAATTGTCTTGATCGTGGGATATCATTGAGAAATAGGAATCCGTGTTATCAAAGGATTTCCTGCGATTATTTCTCGTATGGAATGAGTCAATCATCCACTTTGATACAGGAGCGAAACAATCAACCTATTGATATTGGAAGAACCAAAAGATTTCATTTTAATTGGAATTGGCTCTGTATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTACTCGGTTATTGGGGAAAAATCAATATACTTTTAATGTCGAATCGGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAG

Coding sequence (CDS)

ATGGCATATATGTTTGGAATAGATTCCATTTTGAGAGAGTTGAAAAAGCACTATCTCGTTGAAAGGTTCTATACATCTGCCCTTTCTCAAGGCATTTCTTTAGACAAAGACTCCGTTTTTTCCTCTTTTCGGATGAGGTGTTCCAGAAATGTCTGCGATCGAGTAAATAGCTCGACGAACGAATGGATCGGATCGAATTGGAAAATGGAAAGATTTGTACAAGTTATACCTTTCGTCACCACTTTGTGGAAAATCGTTAGAAGCAGAAGTGATGTGGATTATTCAAGAATCGAAGTCGAGTTGCTTTATAAAAAGAAGATATCAATGAACTTCTATGAAATGGTTTCACGGGATTTAGCCAATTGTCTTGATCGTGGGATATCATTGAGAAATAGGAATCCGTGTTATCAAAGGATTTCCTGCGATTATTTCTCGTATGGAATGAGTCAATCATCCACTTTGATACAGGAGCGAAACAATCAACCTATTGATATTGGAAGAACCAAAAGATTTCATTTTAATTGGAATTGGCTCTGTATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTACTCGGTTATTGGGGAAAAATCAATATACTTTTAATGTCGAATCGGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAG

Protein sequence

MAYMFGIDSILRELKKHYLVERFYTSALSQGISLDKDSVFSSFRMRCSRNVCDRVNSSTNEWIGSNWKMERFVQVIPFVTTLWKIVRSRSDVDYSRIEVELLYKKKISMNFYEMVSRDLANCLDRGISLRNRNPCYQRISCDYFSYGMSQSSTLIQERNNQPIDIGRTKRFHFNWNWLCMDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFHLLERKELKSKYLIAWRYIYTKLLPRAHAMEP
Homology
[Close]
BLAST of CmoCh11G012260 vs. ExPASy Swiss-Prot
Match: P61845 (50S ribosomal protein L23, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.5e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 228
           MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 48

[Close]
BLAST of CmoCh11G012260 vs. ExPASy Swiss-Prot
Match: A0A378 (50S ribosomal protein L23, chloroplastic OS=Coffea arabica OX=13443 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.5e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 228
           MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 48

[Close]
BLAST of CmoCh11G012260 vs. ExPASy Swiss-Prot
Match: P61846 (50S ribosomal protein L23, chloroplastic OS=Sinapis alba OX=3728 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.5e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 228
           MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 48

[Close]
BLAST of CmoCh11G012260 vs. ExPASy Swiss-Prot
Match: Q09MB3 (50S ribosomal protein L23, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-19
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 0 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILF--HLLERKEL 239
           MDGIKYAVFTDKS RLLGKNQYT NVESGSTRTEIKHWVELFFGVKVI    H L RK  
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGR 60

Query: 240 KSKYLIAWRYIYTKLL 254
           +   ++A    Y +++
Sbjct: 61  RMGPIMAHTMHYRRMI 76

[Close]
BLAST of CmoCh11G012260 vs. ExPASy Swiss-Prot
Match: Q49KT5 (50S ribosomal protein L23, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-19
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKV 227
           MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKV
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKV 47

[Close]
BLAST of CmoCh11G012260 vs. ExPASy TrEMBL
Match: A0A3N7FZE5 (50S ribosomal protein L23, chloroplastic OS=Populus trichocarpa OX=3694 GN=POPTR_013G138612 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.7e-27
Identity = 74/117 (63.25%), Postives = 75/117 (64.10%), Query Frame = 0 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFHL-------- 239
           MDGIKYAV TDKS RLL KNQYT NVESGSTRTEIKHWVELFFGVKVI  +         
Sbjct: 1   MDGIKYAVVTDKSIRLLLKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 240 ---------------------------LERKELKSKYLIAWRYIYTKLLPRAHAMEP 262
                                      LERKELKSKYLIAWRYIYTKLLPRAHAMEP
Sbjct: 61  RMRPIMGHTMHYRRMIITLQPGYSIPPLERKELKSKYLIAWRYIYTKLLPRAHAMEP 117

[Close]
BLAST of CmoCh11G012260 vs. ExPASy TrEMBL
Match: A0A1B1W700 (50S ribosomal protein L23, chloroplastic OS=Crescentia cujete OX=1125401 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26
Identity = 71/117 (60.68%), Postives = 74/117 (63.25%), Query Frame = 0 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFHL-------- 239
           MDGIKYAVFTDKS RLLGKNQYT NVESGSTRTE+KHWVELFFGVKVI  +         
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTELKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 240 ---------------------------LERKELKSKYLIAWRYIYTKLLPRAHAMEP 262
                                      L +K  KSKYLIAWRYIYTKLLPRAHAMEP
Sbjct: 61  RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRTKSKYLIAWRYIYTKLLPRAHAMEP 117

[Close]
BLAST of CmoCh11G012260 vs. ExPASy TrEMBL
Match: A0A411L2K5 (50S ribosomal protein L23, chloroplastic OS=Microtea debilis OX=696524 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-26
Identity = 71/118 (60.17%), Postives = 75/118 (63.56%), Query Frame = 0 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFH--------- 239
           MDGIKYAVFTDKS RLLGKNQYT NVESGSTRTEIKHWVELFFGVKVI  +         
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 240 ---------------------------LLERKELKSKYLIAWRYIYTKLLPRAHAMEP 262
                                      L +++  KSKYLIAWRYIYTKLLPRAHAMEP
Sbjct: 61  RMGPIMGHTMHYRRMIITLQSGYSIPPLRKKRTYKSKYLIAWRYIYTKLLPRAHAMEP 118

[Close]
BLAST of CmoCh11G012260 vs. ExPASy TrEMBL
Match: A0A411JSV4 (Ribosomal protein L23 (Fragment) OS=Microtea debilis OX=696524 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 8.2e-26
Identity = 70/117 (59.83%), Postives = 74/117 (63.25%), Query Frame = 0 

Query: 181 DGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVILFH---------- 240
           DGIKYAVFTDKS RLLGKNQYT NVESGSTRTEIKHWVELFFGVKVI  +          
Sbjct: 2   DGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRR 61

Query: 241 --------------------------LLERKELKSKYLIAWRYIYTKLLPRAHAMEP 262
                                     L +++  KSKYLIAWRYIYTKLLPRAHAMEP
Sbjct: 62  MGPIMGHTMHYRRMIITLQSGYSIPPLRKKRTYKSKYLIAWRYIYTKLLPRAHAMEP 118

[Close]
BLAST of CmoCh11G012260 vs. ExPASy TrEMBL
Match: A0A2S0SV05 (50S ribosomal protein L23, chloroplastic OS=Tylosema fassoglense OX=228518 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.4e-25
Identity = 76/147 (51.70%), Postives = 77/147 (52.38%), Query Frame = 0 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVK-------------- 239
           MDGIKY V TDKS RLL KNQYT NVESGSTRTEIKHWVELFFGVK              
Sbjct: 1   MDGIKYVVVTDKSLRLLLKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKRR 60

Query: 240 ---------------------------------------------------VILFHLLER 262
                                                              VILFHLLER
Sbjct: 61  RMGPIMRHTMHYRRIIITLQPGYSIPPLSRNRKKRTSIKILERKELQSKYLVILFHLLER 120

[Close]
BLAST of CmoCh11G012260 vs. TAIR 10
Match: ATCG00840.1 (ribosomal protein L23.1 )

HSP 1 Score: 99.4 bits (246), Expect = 4.6e-21
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 228
           MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 48

[Close]
BLAST of CmoCh11G012260 vs. TAIR 10
Match: ATCG01300.1 (ribosomal protein L23 )

HSP 1 Score: 99.4 bits (246), Expect = 4.6e-21
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 180 MDGIKYAVFTDKSTRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 228
           MDGIKYAVFTDKS RLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI
Sbjct: 1   MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVI 48

The following BLAST results are available for this feature:
BLAST of CmoCh11G012260 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P618456.5e-2097.9250S ribosomal protein L23, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rpl2... [more]
A0A3786.5e-2097.9250S ribosomal protein L23, chloroplastic OS=Coffea arabica OX=13443 GN=rpl23-A P... [more]
P618466.5e-2097.9250S ribosomal protein L23, chloroplastic OS=Sinapis alba OX=3728 GN=rpl23 PE=3 S... [more]
Q09MB31.1e-1968.4250S ribosomal protein L23, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl23-A P... [more]
Q49KT51.9e-1997.8750S ribosomal protein L23, chloroplastic OS=Eucalyptus globulus subsp. globulus ... [more]
BLAST of CmoCh11G012260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3N7FZE55.7e-2763.2550S ribosomal protein L23, chloroplastic OS=Populus trichocarpa OX=3694 GN=POPTR... [more]
A0A1B1W7001.3e-2660.6850S ribosomal protein L23, chloroplastic OS=Crescentia cujete OX=1125401 GN=rpl2... [more]
A0A411L2K52.2e-2660.1750S ribosomal protein L23, chloroplastic OS=Microtea debilis OX=696524 GN=rpl23 ... [more]
A0A411JSV48.2e-2659.83Ribosomal protein L23 (Fragment) OS=Microtea debilis OX=696524 GN=rpl23 PE=3 SV=... [more]
A0A2S0SV052.4e-2551.7050S ribosomal protein L23, chloroplastic OS=Tylosema fassoglense OX=228518 GN=rp... [more]
BLAST of CmoCh11G012260 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00840.14.6e-2197.92ribosomal protein L23.1 [more]
ATCG01300.14.6e-2197.92ribosomal protein L23 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 180..251
e-value: 2.9E-11
score: 45.6
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 183..230
e-value: 1.5E-9
score: 38.1
IPR013025Ribosomal protein L25/L23PANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 180..228
NoneNo IPR availablePANTHERPTHR11620:SF6950S RIBOSOMAL PROTEIN L23, CHLOROPLASTICcoord: 180..228
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 180..229

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G012260.1CmoCh11G012260.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009536 plastid
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome