CmoCh11G012200 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G012200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Location	Cmo_Chr11: 7409194 .. 7409782 (+)
RNA-Seq Expression	CmoCh11G012200
Synteny	CmoCh11G012200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTATTCGTTCGCCGGAACCAGAAGTCAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCTTTCGAGGAATGGGCCAGACCGGGTCATTTCTCGAGAACAATAGCTAAGGGTCCTGATACTACCACTTGGATTTGGAACCTTCATGCTGATGCTCACGATTTCGATAGCCATACTAGTGATTTGGAGGAGATCTCTCGAAAAGTATTTAGTGCCCATTTCGGCCAACTCTCCATCATCTTTCTTTGGCTGAGTGGGATGTATTTCCACGGTGCTCGTTTTTCCAATTATGAAGCATGGCTAGGCGATCCTACTCACATTGGCCCTAGTGCCCAGGTGGTTTGGTTTTTCCAATTATGAAGCATGGCTAGGCGATCCTACTCACATTGGCCCTAGTGCCCAGGTGGTTTGGCCAATAGTGGGCCAAGAAATATTGAATGGTGATGTAGGCGGGGGTTTTCGAGGAATACAAATAACCTCTGGTTTTTTTCAGATGTGGCGAGCATCTGGAATAACTAGTGAATTTTCGAGGAATACAAATAACCTCTGGTTTTTTTCAGATGTGGCGAGCATCTGGAATAACTAG

mRNA sequence

ATGATTATTCGTTCGCCGGAACCAGAAGTCAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCTTTCGAGGAATGGGCCAGACCGGGTCATTTCTCGAGAACAATAGCTAAGGGTCCTGATACTACCACTTGGATTTGGAACCTTCATGCTGATGCTCACGATTTCGATAGCCATACTAGTGATTTGGAGGAGATCTCTCGAAAAGTATTTAGTGCCCATTTCGGCCAACTCTCCATCATCTTTCTTTGGCTGAGTGGGATGTATTTCCACGGTGCTCGTTTTTCCAATTATGAAGCATGGCTAGGCGATCCTACTCACATTGGCCCTACATGGCTAGGCGATCCTACTCACATTGGCCCTAGTGCCCAGGTGGTTTGGCCAATAGTGGGCCAAGAAATATTGAATGGTGATGTAGGCGGGGGTTTTCGAGGAATACAAATAACCTCTGGTTTTTTTCAGATGTGGCGAGCATCTGGAATAACTAGTGAATTTTCGAGGAATACAAATAACCTCTGGTTTTTTTCAGATGTGGCGAGCATCTGGAATAACTAG

Coding sequence (CDS)

ATGATTATTCGTTCGCCGGAACCAGAAGTCAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCTTTCGAGGAATGGGCCAGACCGGGTCATTTCTCGAGAACAATAGCTAAGGGTCCTGATACTACCACTTGGATTTGGAACCTTCATGCTGATGCTCACGATTTCGATAGCCATACTAGTGATTTGGAGGAGATCTCTCGAAAAGTATTTAGTGCCCATTTCGGCCAACTCTCCATCATCTTTCTTTGGCTGAGTGGGATGTATTTCCACGGTGCTCGTTTTTCCAATTATGAAGCATGGCTAGGCGATCCTACTCACATTGGCCCTACATGGCTAGGCGATCCTACTCACATTGGCCCTAGTGCCCAGGTGGTTTGGCCAATAGTGGGCCAAGAAATATTGAATGGTGATGTAGGCGGGGGTTTTCGAGGAATACAAATAACCTCTGGTTTTTTTCAGATGTGGCGAGCATCTGGAATAACTAGTGAATTTTCGAGGAATACAAATAACCTCTGGTTTTTTTCAGATGTGGCGAGCATCTGGAATAACTAG

Protein sequence

MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLGDPTHIGPTWLGDPTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSEFSRNTNNLWFFSDVASIWNN

Homology

[Close]

BLAST of CmoCh11G012200 vs. ExPASy Swiss-Prot
Match: Q2QD89 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psaA PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 4.1e-85
Identity = 150/164 (91.46%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDP+KTSFE+WARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPIKTSFEDWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLGDPTHIGPTWLGDPTHIG 120
           SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA           WLGDPTHIG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA-----------WLGDPTHIG 120

Query: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE 165
           PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGIT+E
Sbjct: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITNE 153

[Close]

BLAST of CmoCh11G012200 vs. ExPASy Swiss-Prot
Match: Q2MII7 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Solanum bulbocastanum OX=147425 GN=psaA PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 6.9e-85
Identity = 151/164 (92.07%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLGDPTHIGPTWLGDPTHIG 120
           SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA           WL DPTHIG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA-----------WLSDPTHIG 120

Query: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE 165
           PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQ+WRASGITSE
Sbjct: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQLWRASGITSE 153

[Close]

BLAST of CmoCh11G012200 vs. ExPASy Swiss-Prot
Match: Q2MIA0 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Solanum lycopersicum OX=4081 GN=psaA PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 6.9e-85
Identity = 151/164 (92.07%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLGDPTHIGPTWLGDPTHIG 120
           SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA           WL DPTHIG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA-----------WLSDPTHIG 120

Query: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE 165
           PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQ+WRASGITSE
Sbjct: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQLWRASGITSE 153

[Close]

BLAST of CmoCh11G012200 vs. ExPASy Swiss-Prot
Match: Q27S50 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Solanum tuberosum OX=4113 GN=psaA PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 6.9e-85
Identity = 151/164 (92.07%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLGDPTHIGPTWLGDPTHIG 120
           SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA           WL DPTHIG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA-----------WLSDPTHIG 120

Query: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE 165
           PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQ+WRASGITSE
Sbjct: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQLWRASGITSE 153

[Close]

BLAST of CmoCh11G012200 vs. ExPASy Swiss-Prot
Match: Q3C1H8 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Nicotiana sylvestris OX=4096 GN=psaA PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 9.1e-85
Identity = 151/164 (92.07%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLGDPTHIGPTWLGDPTHIG 120
           SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA           WL DPTHIG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA-----------WLSDPTHIG 120

Query: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE 165
           PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQ+WRASGITSE
Sbjct: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSE 153

[Close]

BLAST of CmoCh11G012200 vs. ExPASy TrEMBL
Match: A0A0S2IFS3 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita moschata OX=3662 GN=psaA PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.3e-83
Identity = 153/164 (93.29%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLGDPTHIGPTWLGDPTHIG 120
           SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA           WLGDPTHIG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA-----------WLGDPTHIG 120

Query: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE 165
           PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE
Sbjct: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE 153

[Close]

BLAST of CmoCh11G012200 vs. ExPASy TrEMBL
Match: A0A0S2IEI4 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita argyrosperma OX=34294 GN=psaA PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.3e-83
Identity = 153/164 (93.29%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLGDPTHIGPTWLGDPTHIG 120
           SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA           WLGDPTHIG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA-----------WLGDPTHIG 120

Query: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE 165
           PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE
Sbjct: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE 153

[Close]

BLAST of CmoCh11G012200 vs. ExPASy TrEMBL
Match: A0A2H4T205 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita maxima OX=3661 GN=psaA PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.3e-83
Identity = 153/164 (93.29%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLGDPTHIGPTWLGDPTHIG 120
           SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA           WLGDPTHIG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA-----------WLGDPTHIG 120

Query: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE 165
           PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE
Sbjct: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE 153

[Close]

BLAST of CmoCh11G012200 vs. ExPASy TrEMBL
Match: A0A0S2IGT7 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita pepo var. texana OX=37651 GN=psaA PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.3e-83
Identity = 153/164 (93.29%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLGDPTHIGPTWLGDPTHIG 120
           SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA           WLGDPTHIG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA-----------WLGDPTHIG 120

Query: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE 165
           PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE
Sbjct: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE 153

[Close]

BLAST of CmoCh11G012200 vs. ExPASy TrEMBL
Match: A0A0S2IG57 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita pepo subsp. fraterna OX=37649 GN=psaA PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.3e-83
Identity = 153/164 (93.29%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLGDPTHIGPTWLGDPTHIG 120
           SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA           WLGDPTHIG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA-----------WLGDPTHIG 120

Query: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE 165
           PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE
Sbjct: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE 153

[Close]

BLAST of CmoCh11G012200 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 312.8 bits (800), Expect = 1.9e-85
Identity = 149/164 (90.85%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 1   MIIRSPEPEVKILVDRDPVKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60
           MIIRSPEPEVKILVDRDP+KTSFEEWA+PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT
Sbjct: 1   MIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHT 60

Query: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLGDPTHIGPTWLGDPTHIG 120
           SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA           WL DPTHIG
Sbjct: 61  SDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEA-----------WLSDPTHIG 120

Query: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQMWRASGITSE 165
           PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQ+WRASGITSE
Sbjct: 121 PSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSE 153

[Close]

BLAST of CmoCh11G012200 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 88.2 bits (217), Expect = 7.5e-18
Identity = 57/146 (39.04%), Postives = 77/146 (52.74%), Query Frame = 0


Query: 32  FSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEE-ISRKVFSAHFGQLSIIFLWLSGMYF 91
           FS+ +A+ P TT  IW   A AHDF+SH    EE + + +F++HFGQL+IIFLW SG  F
Sbjct: 8   FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLF 67

Query: 92  HGARFSNYEAWLGDPTHIGPTWLGDPTHIGPSAQVVW-PIVGQEILNGDVGGGFRG-IQI 151
           H A   N+E           TW+ DP H+ P A  +W P  GQ  +     GG  G + I
Sbjct: 68  HVAWQGNFE-----------TWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNI 127

Query: 152 T-SGFFQMWRASGITSEFSRNTNNLW 174
             SG +Q W   G+ +     T  L+
Sbjct: 128 AYSGVYQWWYTIGLRTNEDLYTGALF 141

The following BLAST results are available for this feature:

BLAST of CmoCh11G012200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD89	4.1e-85	91.46	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psa...	[more]
Q2MII7	6.9e-85	92.07	Photosystem I P700 chlorophyll a apoprotein A1 OS=Solanum bulbocastanum OX=14742...	[more]
Q2MIA0	6.9e-85	92.07	Photosystem I P700 chlorophyll a apoprotein A1 OS=Solanum lycopersicum OX=4081 G...	[more]
Q27S50	6.9e-85	92.07	Photosystem I P700 chlorophyll a apoprotein A1 OS=Solanum tuberosum OX=4113 GN=p...	[more]
Q3C1H8	9.1e-85	92.07	Photosystem I P700 chlorophyll a apoprotein A1 OS=Nicotiana sylvestris OX=4096 G...	[more]

BLAST of CmoCh11G012200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IFS3	2.3e-83	93.29	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0S2IEI4	2.3e-83	93.29	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita argyrosperma OX=3429...	[more]
A0A2H4T205	2.3e-83	93.29	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita maxima OX=3661 GN=ps...	[more]
A0A0S2IGT7	2.3e-83	93.29	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita pepo var. texana OX=...	[more]
A0A0S2IG57	2.3e-83	93.29	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita pepo subsp. fraterna...	[more]

BLAST of CmoCh11G012200 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00350.1	1.9e-85	90.85	Photosystem I, PsaA/PsaB protein	[more]
ATCG00340.1	7.5e-18	39.04	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 1..110 e-value: 7.2E-54 score: 184.7 coord: 111..181 e-value: 8.5E-21 score: 75.3
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 26..166
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 32..166 e-value: 4.2E-54 score: 184.0
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 8..110
None	No IPR available	PANTHER	PTHR30128:SF56	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN	coord: 8..110
None	No IPR available	PANTHER	PTHR30128:SF56	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN	coord: 111..171
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 111..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012200.1	CmoCh11G012200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding