CmoCh11G012060 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G012060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Gag/pol protein
Location	Cmo_Chr11: 7124761 .. 7125405 (-)
RNA-Seq Expression	CmoCh11G012060
Synteny	CmoCh11G012060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTAGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAATAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTATACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTTAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTATGA

mRNA sequence

ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTAGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAATAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTATACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTTAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTATGA

Coding sequence (CDS)

ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTAGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAATAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTATACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTTAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTATGA

Protein sequence

MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKGQTGEANVAISKKLL

Homology

[Close]

BLAST of CmoCh11G012060 vs. ExPASy TrEMBL
Match: A0A6J1DWG6 (uncharacterized protein LOC111025021 OS=Momordica charantia OX=3673 GN=LOC111025021 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.0e-82
Identity = 153/212 (72.17%), Postives = 182/212 (85.85%), Query Frame = 0


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M+ S +QLLAS+KLNGDNY  WKSNLNTILVIDDL+FVLTEECPP P  NANR  RDAYD
Sbjct: 7   MSTSTIQLLASDKLNGDNYGIWKSNLNTILVIDDLRFVLTEECPPAPAPNANRTVRDAYD 66

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW+KAN+KARVYILASIS+VL+KKH+ + T +EIM+SL+ +FGQPS +L H+A+KY+YNC
Sbjct: 67  RWVKANEKARVYILASISEVLSKKHERLATTREIMDSLQALFGQPSTTLMHDAVKYVYNC 126

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RMKEG+SVREHVL+MMVHFNVAE N+ V++E SQV FIM SLPKS+FQF+ N +MNKIEY
Sbjct: 127 RMKEGSSVREHVLNMMVHFNVAEVNDTVMNEISQVGFIMQSLPKSYFQFKINAMMNKIEY 186

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISKK 213
           +LT LLNELQ Y+SLL NKG   EANVA + K
Sbjct: 187 SLTTLLNELQLYESLLKNKGFEAEANVATTSK 218

[Close]

BLAST of CmoCh11G012060 vs. ExPASy TrEMBL
Match: A0A5A7TWX1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001820 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.9e-81
Identity = 155/211 (73.46%), Postives = 180/211 (85.31%), Query Frame = 0


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M + IVQLLASEKLN DNYTTWKSNLNTILV+DDL+FVLTEECP  P SNANR +R+AYD
Sbjct: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPASNANRTSREAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KARVYILAS+SDVLAKKH+ + TAKEIM+SLKGMFGQP +SLRH+AIKYIY  
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RMKEGTS+REHVL MM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TNV +NKIE+
Sbjct: 121 RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQTNVSLNKIEF 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK 212
           NLT LLNELQ +Q+L   K +  EAN+A +K
Sbjct: 181 NLTTLLNELQRFQNLTMGKAKEMEANIATTK 211

[Close]

BLAST of CmoCh11G012060 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.9e-81
Identity = 155/212 (73.11%), Postives = 181/212 (85.38%), Query Frame = 0


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M  SIVQLLASEKLNGDNY+ WKSNLNTILV+DDL+FVLTEECP  P  NANR  R+AYD
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW+KANDKARVYILAS++DVLAKKHD + TAK IM+SL+ MFGQPS+SLRHEAIK+IY  
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RMKEGTSVREHVLDMM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEF 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISKK 213
           NLT LLNELQ +Q+L  +KG+  EANVA++K+
Sbjct: 181 NLTTLLNELQRFQNLTLSKGKEVEANVAVTKR 212

[Close]

BLAST of CmoCh11G012060 vs. ExPASy TrEMBL
Match: A0A5A7T0E9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00680 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 7.3e-81
Identity = 153/211 (72.51%), Postives = 179/211 (84.83%), Query Frame = 0


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M +SIVQLLAS+KLNGDNY TWKSNLNTILV+DDL+F+LTEECP  P SNANR +R+AYD
Sbjct: 1   MNSSIVQLLASKKLNGDNYATWKSNLNTILVVDDLRFILTEECPQTPTSNANRASREAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KARVYILAS+SDVLAKKH+ + T KEI++SLKGMFGQP +SLRHEAIKYIY  
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHECLATTKEIVDSLKGMFGQPEWSLRHEAIKYIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RMK+GTSVREHVLDMM+HFN+ E N   IDE +QVSFI+ SL KSF  F+TN  +NKIE+
Sbjct: 121 RMKKGTSVREHVLDMMMHFNITEVNGGAIDEANQVSFILESLLKSFIPFQTNASLNKIEF 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK 212
           NLT LLNELQ +Q+L   KG+  EANVA +K
Sbjct: 181 NLTTLLNELQHFQNLTKGKGKEVEANVATTK 211

[Close]

BLAST of CmoCh11G012060 vs. ExPASy TrEMBL
Match: A0A5D3DL59 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001080 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.8e-80
Identity = 153/212 (72.17%), Postives = 176/212 (83.02%), Query Frame = 0


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M +SIVQLL+SEKLNGDNY  WKSNLNTILV+DDL+FVLTEECP  P SNANR +R AYD
Sbjct: 1   MNSSIVQLLSSEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPETPTSNANRGSRKAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KARVYILAS+SDVLAKKH+ + TAKEIM SLKGMFGQP +SLRHEAIKYIY  
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMNSLKGMFGQPKWSLRHEAIKYIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RMKEGTS+REHVLDMM+HFN+ E N   IDE +QVS I+ SLPKSF  F+ N  +NKIE+
Sbjct: 121 RMKEGTSIREHVLDMMIHFNIVEVNGGAIDEANQVSLILESLPKSFIPFQMNASLNKIEF 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISKK 213
           NLT LLNELQ +Q+L   K +  EANVA +K+
Sbjct: 181 NLTTLLNELQRFQNLTKGKEKEVEANVATTKE 212

[Close]

BLAST of CmoCh11G012060 vs. NCBI nr
Match: XP_022158568.1 (uncharacterized protein LOC111025021 [Momordica charantia])

HSP 1 Score: 316.2 bits (809), Expect = 2.1e-82
Identity = 153/212 (72.17%), Postives = 182/212 (85.85%), Query Frame = 0


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M+ S +QLLAS+KLNGDNY  WKSNLNTILVIDDL+FVLTEECPP P  NANR  RDAYD
Sbjct: 7   MSTSTIQLLASDKLNGDNYGIWKSNLNTILVIDDLRFVLTEECPPAPAPNANRTVRDAYD 66

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW+KAN+KARVYILASIS+VL+KKH+ + T +EIM+SL+ +FGQPS +L H+A+KY+YNC
Sbjct: 67  RWVKANEKARVYILASISEVLSKKHERLATTREIMDSLQALFGQPSTTLMHDAVKYVYNC 126

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RMKEG+SVREHVL+MMVHFNVAE N+ V++E SQV FIM SLPKS+FQF+ N +MNKIEY
Sbjct: 127 RMKEGSSVREHVLNMMVHFNVAEVNDTVMNEISQVGFIMQSLPKSYFQFKINAMMNKIEY 186

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISKK 213
           +LT LLNELQ Y+SLL NKG   EANVA + K
Sbjct: 187 SLTTLLNELQLYESLLKNKGFEAEANVATTSK 218

[Close]

BLAST of CmoCh11G012060 vs. NCBI nr
Match: KAA0048103.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 312.0 bits (798), Expect = 4.0e-81
Identity = 155/211 (73.46%), Postives = 180/211 (85.31%), Query Frame = 0


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M + IVQLLASEKLN DNYTTWKSNLNTILV+DDL+FVLTEECP  P SNANR +R+AYD
Sbjct: 1   MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPASNANRTSREAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KARVYILAS+SDVLAKKH+ + TAKEIM+SLKGMFGQP +SLRH+AIKYIY  
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RMKEGTS+REHVL MM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TNV +NKIE+
Sbjct: 121 RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQTNVSLNKIEF 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK 212
           NLT LLNELQ +Q+L   K +  EAN+A +K
Sbjct: 181 NLTTLLNELQRFQNLTMGKAKEMEANIATTK 211

[Close]

BLAST of CmoCh11G012060 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 312.0 bits (798), Expect = 4.0e-81
Identity = 155/212 (73.11%), Postives = 181/212 (85.38%), Query Frame = 0


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M  SIVQLLASEKLNGDNY+ WKSNLNTILV+DDL+FVLTEECP  P  NANR  R+AYD
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW+KANDKARVYILAS++DVLAKKHD + TAK IM+SL+ MFGQPS+SLRHEAIK+IY  
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RMKEGTSVREHVLDMM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEF 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISKK 213
           NLT LLNELQ +Q+L  +KG+  EANVA++K+
Sbjct: 181 NLTTLLNELQRFQNLTLSKGKEVEANVAVTKR 212

[Close]

BLAST of CmoCh11G012060 vs. NCBI nr
Match: KAA0035676.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK30868.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 310.1 bits (793), Expect = 1.5e-80
Identity = 153/211 (72.51%), Postives = 179/211 (84.83%), Query Frame = 0


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M +SIVQLLAS+KLNGDNY TWKSNLNTILV+DDL+F+LTEECP  P SNANR +R+AYD
Sbjct: 1   MNSSIVQLLASKKLNGDNYATWKSNLNTILVVDDLRFILTEECPQTPTSNANRASREAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KARVYILAS+SDVLAKKH+ + T KEI++SLKGMFGQP +SLRHEAIKYIY  
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHECLATTKEIVDSLKGMFGQPEWSLRHEAIKYIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RMK+GTSVREHVLDMM+HFN+ E N   IDE +QVSFI+ SL KSF  F+TN  +NKIE+
Sbjct: 121 RMKKGTSVREHVLDMMMHFNITEVNGGAIDEANQVSFILESLLKSFIPFQTNASLNKIEF 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK 212
           NLT LLNELQ +Q+L   KG+  EANVA +K
Sbjct: 181 NLTTLLNELQHFQNLTKGKGKEVEANVATTK 211

[Close]

BLAST of CmoCh11G012060 vs. NCBI nr
Match: KAA0041460.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK24334.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 307.4 bits (786), Expect = 9.8e-80
Identity = 153/212 (72.17%), Postives = 176/212 (83.02%), Query Frame = 0


Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRIARDAYD 60
           M +SIVQLL+SEKLNGDNY  WKSNLNTILV+DDL+FVLTEECP  P SNANR +R AYD
Sbjct: 1   MNSSIVQLLSSEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPETPTSNANRGSRKAYD 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KARVYILAS+SDVLAKKH+ + TAKEIM SLKGMFGQP +SLRHEAIKYIY  
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMNSLKGMFGQPKWSLRHEAIKYIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RMKEGTS+REHVLDMM+HFN+ E N   IDE +QVS I+ SLPKSF  F+ N  +NKIE+
Sbjct: 121 RMKEGTSIREHVLDMMIHFNIVEVNGGAIDEANQVSLILESLPKSFIPFQMNASLNKIEF 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISKK 213
           NLT LLNELQ +Q+L   K +  EANVA +K+
Sbjct: 181 NLTTLLNELQRFQNLTKGKEKEVEANVATTKE 212

The following BLAST results are available for this feature:

BLAST of CmoCh11G012060 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G012060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWG6	1.0e-82	72.17	uncharacterized protein LOC111025021 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5A7TWX1	1.9e-81	73.46	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G0018...	[more]
E2GK51	1.9e-81	73.11	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7T0E9	7.3e-81	72.51	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0068...	[more]
A0A5D3DL59	4.8e-80	72.17	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G0010...	[more]

BLAST of CmoCh11G012060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158568.1	2.1e-82	72.17	uncharacterized protein LOC111025021 [Momordica charantia]	[more]
KAA0048103.1	4.0e-81	73.46	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	4.0e-81	73.11	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0035676.1	1.5e-80	72.51	gag/pol protein [Cucumis melo var. makuwa] >TYK30868.1 gag/pol protein [Cucumis ...	[more]
KAA0041460.1	9.8e-80	72.17	gag/pol protein [Cucumis melo var. makuwa] >TYK24334.1 gag/pol protein [Cucumis ...	[more]

BLAST of CmoCh11G012060 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..192 e-value: 4.4E-18 score: 65.4
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 18..208
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 18..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012060.1	CmoCh11G012060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding