CmoCh11G011970 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G011970
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Cmo_Chr11: 7044867 .. 7045184 (-)
RNA-Seq Expression	CmoCh11G011970
Synteny	CmoCh11G011970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGTACTATGGTGGTAGCACGTGACATAAAATCTGGAACTTTATACACCACTGCAGGGTGTATGAACATGGCTGCTGTTACTGAGAGTGCTTCAAATTCAAGTCTATGGCACAATAGACTTGGAAATATGAGCGCGAAAGAAATAAAGATGTTGGTTGCGAAACGAGTTTTAGAAGGTCTGAAATCTGTTGATGTGGATCGTTGTGAGAACTATGTTATGAGCAAGCAGAAACGAGTTAGCTTCACAAGGGCTGCTAGAGAATTGAAGAAAGTGCGGGCGAAAATGATCCATACAGATTTGGAGCAAGGTTAA

mRNA sequence

ATGAAGGGTACTATGGTGGTAGCACGTGACATAAAATCTGGAACTTTATACACCACTGCAGGGTGTATGAACATGGCTGCTGTTACTGAGAGTGCTTCAAATTCAAGTCTATGGCACAATAGACTTGGAAATATGAGCGCGAAAGAAATAAAGATGTTGGTTGCGAAACGAGTTTTAGAAGGTCTGAAATCTGTTGATGTGGATCGTTGTGAGAACTATGTTATGAGCAAGCAGAAACGAGTTAGCTTCACAAGGGCTGCTAGAGAATTGAAGAAAGTGCGGGCGAAAATGATCCATACAGATTTGGAGCAAGGTTAA

Coding sequence (CDS)

ATGAAGGGTACTATGGTGGTAGCACGTGACATAAAATCTGGAACTTTATACACCACTGCAGGGTGTATGAACATGGCTGCTGTTACTGAGAGTGCTTCAAATTCAAGTCTATGGCACAATAGACTTGGAAATATGAGCGCGAAAGAAATAAAGATGTTGGTTGCGAAACGAGTTTTAGAAGGTCTGAAATCTGTTGATGTGGATCGTTGTGAGAACTATGTTATGAGCAAGCAGAAACGAGTTAGCTTCACAAGGGCTGCTAGAGAATTGAAGAAAGTGCGGGCGAAAATGATCCATACAGATTTGGAGCAAGGTTAA

Protein sequence

MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDLEQG

Homology

[Close]

BLAST of CmoCh11G011970 vs. ExPASy TrEMBL
Match: A0A2G3CAD5 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_16881 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.1e-26
Identity = 67/94 (71.28%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1   MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLE 60
           +KG MVVAR  K GTLYTTAGC+NM  V E AS S LWHNRLG+MSAK +KMLVAKR LE
Sbjct: 522 VKGDMVVARGTKFGTLYTTAGCINMDVVAEGASGSCLWHNRLGHMSAKRMKMLVAKRALE 581

Query: 61  GLKSVDVDRCENYVMSKQKRVSFTRAARELKKVR 95
           G+K VD+  CE+YVM KQKRVSFT+ AR  KKVR
Sbjct: 582 GMKFVDMGLCESYVMGKQKRVSFTKTARAPKKVR 615

[Close]

BLAST of CmoCh11G011970 vs. ExPASy TrEMBL
Match: A0A5B7BAK4 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_035380 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.7e-18
Identity = 49/101 (48.51%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 2   KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEG 61
           KG MV+AR  K GTLY T    +   + E+ S+S+LWH RLG+MS K +K+L +K  L+G
Sbjct: 382 KGAMVMARGKKEGTLYVTTNSRDAITIAETGSDSNLWHYRLGHMSQKGMKVLHSKGKLQG 441

Query: 62  LKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL 103
           LKSVD+D CE+ +  KQK+VSF++A R  K  + +++HTD+
Sbjct: 442 LKSVDIDLCEDCIFGKQKKVSFSKAGRTPKAEKLELVHTDV 482

[Close]

BLAST of CmoCh11G011970 vs. ExPASy TrEMBL
Match: A0A438DGG6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3492 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.8e-17
Identity = 49/101 (48.51%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 2   KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEG 61
           KGT V+AR  K+ TLY T+   +  AV ++++N+SLWH RLG+MS K +KML++K  L  
Sbjct: 231 KGTRVLARGKKTATLYMTSCPRDTIAVADASTNTSLWHRRLGHMSEKGMKMLLSKGKLPE 290

Query: 62  LKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL 103
           LKS+D D CE++++ KQKRVSF +  R  K  + +++HTDL
Sbjct: 291 LKSIDFDMCESFILGKQKRVSFLKTGRTPKAEKLELVHTDL 331

[Close]

BLAST of CmoCh11G011970 vs. ExPASy TrEMBL
Match: A0A438JKL2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2898 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.8e-17
Identity = 49/101 (48.51%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 2   KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEG 61
           KG  V+AR  K+GTLY T+   +  AVT++++++SLWH RLG+MS K +KML++K  L  
Sbjct: 346 KGARVLARGKKTGTLYMTSCPRDTIAVTDASTDTSLWHRRLGHMSEKGMKMLLSKGKLPE 405

Query: 62  LKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL 103
           LKS+D D CE+ ++ KQK+VSF +  R LK  + +++HTDL
Sbjct: 406 LKSIDFDMCESCILGKQKKVSFLKTGRTLKAEKLELVHTDL 446

[Close]

BLAST of CmoCh11G011970 vs. ExPASy TrEMBL
Match: A0A7N2M9V5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.8e-17
Identity = 48/101 (47.52%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 2   KGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEG 61
           KG  V+AR  K+GTLY T+   ++ AV ++++++SLWH RLG+MS K  KML++K  L  
Sbjct: 333 KGARVLARGKKTGTLYMTSSPRDIIAVADASTDTSLWHRRLGHMSEKGTKMLLSKGKLPE 392

Query: 62  LKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL 103
           LKS+D D CE+ ++ KQK+VSF +  R LK  + +++HTDL
Sbjct: 393 LKSIDFDMCESCILGKQKKVSFLKTGRTLKAEKLELVHTDL 433

[Close]

BLAST of CmoCh11G011970 vs. NCBI nr
Match: MUG03565.1 (DDE-type integrase/transposase/recombinase [Bacillus tequilensis])

HSP 1 Score: 140.6 bits (353), Expect = 7.8e-30
Identity = 73/102 (71.57%), Postives = 83/102 (81.37%), Query Frame = 0


Query: 1   MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLE 60
           +KG MVVAR  KSGTLYTTAGC+NMAAV E AS S LWHNRLG+MS K +KMLVAK  LE
Sbjct: 37  VKGAMVVARGTKSGTLYTTAGCINMAAVAEGASASCLWHNRLGHMSTKGMKMLVAKGALE 96

Query: 61  GLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL 103
           GLKSVD+  CE+ VM KQKRVSFT+  RE KKVR +M+HTD+
Sbjct: 97  GLKSVDMGLCESCVMGKQKRVSFTKTPREPKKVRLEMVHTDV 138

[Close]

BLAST of CmoCh11G011970 vs. NCBI nr
Match: PHU15676.1 (hypothetical protein BC332_16881 [Capsicum chinense])

HSP 1 Score: 129.0 bits (323), Expect = 2.4e-26
Identity = 67/94 (71.28%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1   MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLE 60
           +KG MVVAR  K GTLYTTAGC+NM  V E AS S LWHNRLG+MSAK +KMLVAKR LE
Sbjct: 522 VKGDMVVARGTKFGTLYTTAGCINMDVVAEGASGSCLWHNRLGHMSAKRMKMLVAKRALE 581

Query: 61  GLKSVDVDRCENYVMSKQKRVSFTRAARELKKVR 95
           G+K VD+  CE+YVM KQKRVSFT+ AR  KKVR
Sbjct: 582 GMKFVDMGLCESYVMGKQKRVSFTKTARAPKKVR 615

[Close]

BLAST of CmoCh11G011970 vs. NCBI nr
Match: KAF3643966.1 (Pleiotropic drug resistance protein 1 [Capsicum annuum])

HSP 1 Score: 128.3 bits (321), Expect = 4.0e-26
Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1    MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLE 60
            MKG MVVAR  KSGTL+TTA C+NMA V E AS+  LWHNRLG+MSAK +KML AK  LE
Sbjct: 1734 MKGAMVVARGTKSGTLHTTARCINMAVVAEGASDLCLWHNRLGHMSAKRMKMLAAKGALE 1793

Query: 61   GLKSVDVDRCENYVMSKQKRVSFTRAARELKKVRAKMIHTDL 103
            G+K VD+  CE+ VM KQKRVSFT+ A+  KKVR +M+H D+
Sbjct: 1794 GMKFVDMGLCESCVMGKQKRVSFTKTAKAPKKVRLEMVHIDV 1835

[Close]

BLAST of CmoCh11G011970 vs. NCBI nr
Match: KAF3680274.1 (putative 50S ribosomal protein L18-like [Capsicum annuum])

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 51/82 (62.20%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 21  GCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLEGLKSVDVDRCENYVMSKQKR 80
           GC+N+ +VTESAS S LW+NRLG+MSAK +KML AK  L+GLKSVD+  C++ VM KQKR
Sbjct: 658 GCLNVVSVTESASGSCLWNNRLGHMSAKGMKMLAAKGALKGLKSVDMGLCKSCVMGKQKR 717

Query: 81  VSFTRAARELKKVRAKMIHTDL 103
           VSF + ARE K+VR +M+HT++
Sbjct: 718 VSFMKTARETKQVRLEMVHTNV 739

[Close]

BLAST of CmoCh11G011970 vs. NCBI nr
Match: KAF3659213.1 (putative disease resistance RPP13-like protein 3-like isoform X1 [Capsicum annuum])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 51/80 (63.75%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1   MKGTMVVARDIKSGTLYTTAGCMNMAAVTESASNSSLWHNRLGNMSAKEIKMLVAKRVLE 60
           ++G MVVAR  + GTLYTT GC+NM  V E A +S LWHNRLG++SAK +KML AKR LE
Sbjct: 419 VRGAMVVARGTRIGTLYTTVGCINMVVVAEGAFDSCLWHNRLGHISAKGMKMLAAKRALE 478

Query: 61  GLKSVDVDRCENYVMSKQKR 81
           G+KSVD+  CE+ VM KQKR
Sbjct: 479 GMKSVDMGLCESCVMGKQKR 498

The following BLAST results are available for this feature:

BLAST of CmoCh11G011970 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G011970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G3CAD5	1.1e-26	71.28	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_16881 PE=4 SV=1	[more]
A0A5B7BAK4	9.7e-18	48.51	Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_035380 PE=4 SV=1	[more]
A0A438DGG6	2.8e-17	48.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438JKL2	2.8e-17	48.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A7N2M9V5	4.8e-17	47.52	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CmoCh11G011970 vs. NCBI nr


Match Name	E-value	Identity	Description
MUG03565.1	7.8e-30	71.57	DDE-type integrase/transposase/recombinase [Bacillus tequilensis]	[more]
PHU15676.1	2.4e-26	71.28	hypothetical protein BC332_16881 [Capsicum chinense]	[more]
KAF3643966.1	4.0e-26	64.71	Pleiotropic drug resistance protein 1 [Capsicum annuum]	[more]
KAF3680274.1	1.1e-18	62.20	putative 50S ribosomal protein L18-like [Capsicum annuum]	[more]
KAF3659213.1	1.4e-18	63.75	putative disease resistance RPP13-like protein 3-like isoform X1 [Capsicum annuu...	[more]

BLAST of CmoCh11G011970 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 27..78 e-value: 1.3E-9 score: 37.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G011970.1	CmoCh11G011970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005488	binding
molecular_function	GO:0016740	transferase activity