CmoCh11G011470 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G011470
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Cmo_Chr11: 6516776 .. 6517591 (+)
RNA-Seq Expression	CmoCh11G011470
Synteny	CmoCh11G011470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGTGGTCGAAGAAGGTTTCGAAGAACCATAAGATACCACGGGTTATACGGCGACATAAAACAAGGCGTTAAAAGAGGTGCGATCAAAGGATAAGACGACACTATACATGTTGTCCGAGCTGTTGCTGAGTCGAGCTTTGAGAAGATTGTTAGTGGAACTACTTCAAAAGAAGCGTGGGAAACTTTAGGAAAAGTATTCAAAGGAACCGACCGAGTCAAGCAAGTGCGTCTCCAAACTCTTCATGGCGAGTTGGAGAGCATGAAGATGAAGGAGTTAGAAAGTGTATCCGACTACATCACACGTGTACAGACCGTGGTAAACCAACTCAACCGAAACGAAGAAATGTTACCCGAGACGCGGATTGTGGAGAAGATTTTGCGGTCATTAACCAATAACTTTGAGAATGTTGTATGTACGATAGAAGAGTCAAAGGACCTAGCGACGTTCACGGTCGATGAGCTCGCCGGTTCTCACGAGGCACACGAGCAACGTAAGAAGAAGGAGGAAACACTTGATCAAGCAGTTCAAACCAAGCATCAATCAAAGATGAAAAGGTACTCTACTCTCAAAATTTTCAAGGTAGAGGTTGTAGTCGTGGAAGCCGCGGAAATGGTCGTGGAAGCTGCGGAAATGGTCAAGGTGGTCAAGGCAGCAGTAATGAAGGATACTATAAGGAGAAGAGATAGTCGAGCCAAGCAAATTGGCGTGGAAGAGGACGCAGTCAAAGAAGATGGTCACTATGCGAATGATTGTAACTCCGACAAATGTTACAATTGTGGCAGAGTGAGACATTTCGCAAGCGATTATTGA

mRNA sequence

ATGGGAGGTGGTCGAAGAAGGTTTCGAAGAACCATAAGATACCACGGGTTATACGGCGACATAAAACAAGGCGTTAAAAGAGGAAAAGTATTCAAAGGAACCGACCGAGTCAAGCAAGTGCGTCTCCAAACTCTTCATGGCGAGTTGGAGAGCATGAAGATGAAGGAGTTAGAAAGTGTATCCGACTACATCACACGTGTACAGACCGTGGTAAACCAACTCAACCGAAACGAAGAAATGTTACCCGAGACGCGGATTGTGGAGAAGATTTTGCGGTCATTAACCAATAACTTTGAGAATGTTGTATGTACGATAGAAGAGTCAAAGGACCTAGCGACGTTCACGGTCGATGAGCTCGCCGGTTCTCACGAGGCACACGAGCAACGTAAGAAGAAGGAGGAAACACTTGATCAAGCAGTTCAAACCAAGCATCAATCAAAGATGAAAAGGTACTCTACTCTCAAAATTTTCAAGGTAGAGGTTGTAGTCGTGGAAGCCGCGGAAATGGTCGTGGAAGCTGCGGAAATGGTCAAGGTGGTCAAGGCAGCAGTAATGAAGGATACTATAAGGAGAAGAGATAGTCGAGCCAAGCAAATTGGCGTGGAAGAGGACGCAGTCAAAGAAGATGGTCACTATGCGAATGATTGTAACTCCGACAAATGTTACAATTGTGGCAGAGTGAGACATTTCGCAAGCGATTATTGA

Coding sequence (CDS)

ATGGGAGGTGGTCGAAGAAGGTTTCGAAGAACCATAAGATACCACGGGTTATACGGCGACATAAAACAAGGCGTTAAAAGAGGAAAAGTATTCAAAGGAACCGACCGAGTCAAGCAAGTGCGTCTCCAAACTCTTCATGGCGAGTTGGAGAGCATGAAGATGAAGGAGTTAGAAAGTGTATCCGACTACATCACACGTGTACAGACCGTGGTAAACCAACTCAACCGAAACGAAGAAATGTTACCCGAGACGCGGATTGTGGAGAAGATTTTGCGGTCATTAACCAATAACTTTGAGAATGTTGTATGTACGATAGAAGAGTCAAAGGACCTAGCGACGTTCACGGTCGATGAGCTCGCCGGTTCTCACGAGGCACACGAGCAACGTAAGAAGAAGGAGGAAACACTTGATCAAGCAGTTCAAACCAAGCATCAATCAAAGATGAAAAGGTACTCTACTCTCAAAATTTTCAAGGTAGAGGTTGTAGTCGTGGAAGCCGCGGAAATGGTCGTGGAAGCTGCGGAAATGGTCAAGGTGGTCAAGGCAGCAGTAATGAAGGATACTATAAGGAGAAGAGATAGTCGAGCCAAGCAAATTGGCGTGGAAGAGGACGCAGTCAAAGAAGATGGTCACTATGCGAATGATTGTAACTCCGACAAATGTTACAATTGTGGCAGAGTGAGACATTTCGCAAGCGATTATTGA

Protein sequence

MGGGRRRFRRTIRYHGLYGDIKQGVKRGKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIVEKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHEQRKKKEETLDQAVQTKHQSKMKRYSTLKIFKVEVVVVEAAEMVVEAAEMVKVVKAAVMKDTIRRRDSRAKQIGVEEDAVKEDGHYANDCNSDKCYNCGRVRHFASDY

Homology

[Close]

BLAST of CmoCh11G011470 vs. ExPASy TrEMBL
Match: A0A6A2XLA3 (Rhodanese-like domain-containing protein 4A OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111584pilonHSYRG00229 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.1e-48
Identity = 124/182 (68.13%), Postives = 139/182 (76.37%), Query Frame = 0


Query: 28  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIV 87
           GKVFKG DRVKQ+RLQTL GELESMKM E ESVSDYI RVQ VVNQL RN+E L + R++
Sbjct: 100 GKVFKGADRVKQLRLQTLRGELESMKM-ESESVSDYIMRVQAVVNQLIRNDEALTDMRVM 159

Query: 88  EKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHEQRKKKEETLDQAVQTKHQSK 147
           EKILRSLT+NFENVVC IEESKDL   TVDELAGS EAHEQ KKK    ++  + + QSK
Sbjct: 160 EKILRSLTDNFENVVCAIEESKDLTMLTVDELAGSIEAHEQHKKKNN--EENFKPRRQSK 219

Query: 148 MKRYSTLKIFKVEVVVVEAAEMVVEAAEMVKVVKAAVMKDTIRRRDSRAKQIGVEEDAVK 207
            KRYS  KIF+VE        MVVE  EMV VVKA VMK TIRR+D++A QIGV EDAV 
Sbjct: 220 TKRYSIFKIFEVEC-------MVVEVVEMVAVVKAVVMKSTIRRKDNQANQIGVIEDAVD 271

Query: 208 ED 210
           E+
Sbjct: 280 EE 271

[Close]

BLAST of CmoCh11G011470 vs. ExPASy TrEMBL
Match: A0A6A3BX58 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00016637pilonHSYRG00095 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 6.4e-46
Identity = 126/218 (57.80%), Postives = 147/218 (67.43%), Query Frame = 0


Query: 28  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIV 87
           GKVFKG DRVKQVRLQTL GELES+KMKELESVSDYITRVQTVVNQLNRN E L E R+V
Sbjct: 99  GKVFKGADRVKQVRLQTLRGELESIKMKELESVSDYITRVQTVVNQLNRNGEALTEARVV 158

Query: 88  EKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHEQR--KKKEETLDQAVQTKHQ 147
           EKILRSLT+NFENVVC IEESKDLAT TV+EL GS EAHEQR  KKKEETL+QA+QTK  
Sbjct: 159 EKILRSLTDNFENVVCAIEESKDLATLTVNELTGSLEAHEQRKKKKKEETLEQALQTKAL 218

Query: 148 SKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSR 207
            K ++    + F+ +             +         +  +++      +   R R  R
Sbjct: 219 IKDEKVFYSQNFRGKGRGRGGRGYGRGGQGDSHEGYYKENGQSSQPNWRGRGRGRGRGGR 278

Query: 208 AKQIGVEEDAVKEDGHYANDCNSDKCYNCGRVRHFASD 234
           +    +E     + GHYA DCNSDKCYNCG+V HFA D
Sbjct: 279 SNYSNIECYKCYKYGHYAKDCNSDKCYNCGKVGHFAKD 316

[Close]

BLAST of CmoCh11G011470 vs. ExPASy TrEMBL
Match: A0A6A3AD07 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110483pilonHSYRG00411 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 4.2e-45
Identity = 124/218 (56.88%), Postives = 147/218 (67.43%), Query Frame = 0


Query: 28  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIV 87
           GKVFKG +RVKQVRLQTL GELES+K+KELESVSDYITRVQTVVNQLNRN E L E R+V
Sbjct: 99  GKVFKGANRVKQVRLQTLRGELESIKLKELESVSDYITRVQTVVNQLNRNGEALTEARVV 158

Query: 88  EKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHEQR--KKKEETLDQAVQTKHQ 147
           EKILRSLT+NFENVVC IEESKDLAT TV+EL GS EAHEQR  KKKEETL+QA+QTK  
Sbjct: 159 EKILRSLTDNFENVVCAIEESKDLATLTVNELTGSLEAHEQRKKKKKEETLEQALQTKAL 218

Query: 148 SKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSR 207
            K ++    + F+ +             +         +  +++      +   R R  R
Sbjct: 219 IKDEKVFYSQNFRGKGRGRGGRGYGRGGQGDSHEGYYKENGQSSQPNWRGRGRERGRGGR 278

Query: 208 AKQIGVEEDAVKEDGHYANDCNSDKCYNCGRVRHFASD 234
           +    +E     + GHYA DCNSDKCYNCG+V HFA D
Sbjct: 279 SNYSNIECYKCYKYGHYAKDCNSDKCYNCGKVGHFAKD 316

[Close]

BLAST of CmoCh11G011470 vs. ExPASy TrEMBL
Match: A0A6A3CZT6 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00001732pilonHSYRG00018 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 7.1e-45
Identity = 124/218 (56.88%), Postives = 146/218 (66.97%), Query Frame = 0


Query: 28  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIV 87
           GKVFKG DRVKQVRLQTL GELES+KMKELESVSDYITRVQTVVNQLN N E L E R+V
Sbjct: 99  GKVFKGADRVKQVRLQTLRGELESIKMKELESVSDYITRVQTVVNQLNCNGEALTEARVV 158

Query: 88  EKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHEQRKK--KEETLDQAVQTKHQ 147
           EKILRSLT+NFENVVC IEESKDLAT T++EL GS EAHEQRKK  KEETL+QA+QTK  
Sbjct: 159 EKILRSLTDNFENVVCAIEESKDLATLTINELTGSLEAHEQRKKKRKEETLEQALQTKAL 218

Query: 148 SKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSR 207
            K ++    + F+ +             +         +  +++      +   R R  R
Sbjct: 219 IKDEKVFYSQNFRGKGRGRGGRGYGRGGQGDSHEGYYKENGQSSQPNWRGRGRGRGRGGR 278

Query: 208 AKQIGVEEDAVKEDGHYANDCNSDKCYNCGRVRHFASD 234
           +    +E     + GHYA DCNSDKCYNCG+V HFA D
Sbjct: 279 SNYSNIECYKCYKYGHYAKDCNSDKCYNCGKVGHFAKD 316

[Close]

BLAST of CmoCh11G011470 vs. ExPASy TrEMBL
Match: A0A6A3ASE2 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110418pilonHSYRG00346 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 9.3e-45
Identity = 124/218 (56.88%), Postives = 146/218 (66.97%), Query Frame = 0


Query: 28  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIV 87
           GKVFKG DRVKQVRLQTL  ELES+KMKELESVSDYITRVQTVVNQLNRN E L E R++
Sbjct: 99  GKVFKGADRVKQVRLQTLRDELESIKMKELESVSDYITRVQTVVNQLNRNGEALTEARVM 158

Query: 88  EKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHEQR--KKKEETLDQAVQTKHQ 147
           EKILRSLT+NFENVVC IEESKDLAT TV+EL GS EAHEQR  KKKEETL+QA+QTK  
Sbjct: 159 EKILRSLTDNFENVVCAIEESKDLATLTVNELTGSLEAHEQRKKKKKEETLEQALQTKAL 218

Query: 148 SKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAA----VMKDTIRRRDSR 207
            K ++    + F+ +             +         +  +++      +   R R  R
Sbjct: 219 IKDEKVFYSQNFRGKGRGRGGRRYGRGGQGDSHEGYYKENGQSSQPNWCGRGRGRGRGGR 278

Query: 208 AKQIGVEEDAVKEDGHYANDCNSDKCYNCGRVRHFASD 234
           +    +E     + GHYA DCNSDKCYNCG+V HFA D
Sbjct: 279 SNYSNIECYKCYKYGHYAKDCNSDKCYNCGKVGHFAKD 316

[Close]

BLAST of CmoCh11G011470 vs. NCBI nr
Match: KAE8676583.1 (rhodanese-like domain-containing protein 4A [Hibiscus syriacus])

HSP 1 Score: 203.4 bits (516), Expect = 2.2e-48
Identity = 124/182 (68.13%), Postives = 139/182 (76.37%), Query Frame = 0


Query: 28  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIV 87
           GKVFKG DRVKQ+RLQTL GELESMKM E ESVSDYI RVQ VVNQL RN+E L + R++
Sbjct: 100 GKVFKGADRVKQLRLQTLRGELESMKM-ESESVSDYIMRVQAVVNQLIRNDEALTDMRVM 159

Query: 88  EKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHEQRKKKEETLDQAVQTKHQSK 147
           EKILRSLT+NFENVVC IEESKDL   TVDELAGS EAHEQ KKK    ++  + + QSK
Sbjct: 160 EKILRSLTDNFENVVCAIEESKDLTMLTVDELAGSIEAHEQHKKKNN--EENFKPRRQSK 219

Query: 148 MKRYSTLKIFKVEVVVVEAAEMVVEAAEMVKVVKAAVMKDTIRRRDSRAKQIGVEEDAVK 207
            KRYS  KIF+VE        MVVE  EMV VVKA VMK TIRR+D++A QIGV EDAV 
Sbjct: 220 TKRYSIFKIFEVEC-------MVVEVVEMVAVVKAVVMKSTIRRKDNQANQIGVIEDAVD 271

Query: 208 ED 210
           E+
Sbjct: 280 EE 271

[Close]

BLAST of CmoCh11G011470 vs. NCBI nr
Match: KAE8721174.1 (hypothetical protein F3Y22_tig00016637pilonHSYRG00095 [Hibiscus syriacus])

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-45
Identity = 126/218 (57.80%), Postives = 147/218 (67.43%), Query Frame = 0


Query: 28  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIV 87
           GKVFKG DRVKQVRLQTL GELES+KMKELESVSDYITRVQTVVNQLNRN E L E R+V
Sbjct: 99  GKVFKGADRVKQVRLQTLRGELESIKMKELESVSDYITRVQTVVNQLNRNGEALTEARVV 158

Query: 88  EKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHEQR--KKKEETLDQAVQTKHQ 147
           EKILRSLT+NFENVVC IEESKDLAT TV+EL GS EAHEQR  KKKEETL+QA+QTK  
Sbjct: 159 EKILRSLTDNFENVVCAIEESKDLATLTVNELTGSLEAHEQRKKKKKEETLEQALQTKAL 218

Query: 148 SKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSR 207
            K ++    + F+ +             +         +  +++      +   R R  R
Sbjct: 219 IKDEKVFYSQNFRGKGRGRGGRGYGRGGQGDSHEGYYKENGQSSQPNWRGRGRGRGRGGR 278

Query: 208 AKQIGVEEDAVKEDGHYANDCNSDKCYNCGRVRHFASD 234
           +    +E     + GHYA DCNSDKCYNCG+V HFA D
Sbjct: 279 SNYSNIECYKCYKYGHYAKDCNSDKCYNCGKVGHFAKD 316

[Close]

BLAST of CmoCh11G011470 vs. NCBI nr
Match: KAE8702390.1 (hypothetical protein F3Y22_tig00110483pilonHSYRG00411 [Hibiscus syriacus])

HSP 1 Score: 191.4 bits (485), Expect = 8.6e-45
Identity = 124/218 (56.88%), Postives = 147/218 (67.43%), Query Frame = 0


Query: 28  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIV 87
           GKVFKG +RVKQVRLQTL GELES+K+KELESVSDYITRVQTVVNQLNRN E L E R+V
Sbjct: 99  GKVFKGANRVKQVRLQTLRGELESIKLKELESVSDYITRVQTVVNQLNRNGEALTEARVV 158

Query: 88  EKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHEQR--KKKEETLDQAVQTKHQ 147
           EKILRSLT+NFENVVC IEESKDLAT TV+EL GS EAHEQR  KKKEETL+QA+QTK  
Sbjct: 159 EKILRSLTDNFENVVCAIEESKDLATLTVNELTGSLEAHEQRKKKKKEETLEQALQTKAL 218

Query: 148 SKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSR 207
            K ++    + F+ +             +         +  +++      +   R R  R
Sbjct: 219 IKDEKVFYSQNFRGKGRGRGGRGYGRGGQGDSHEGYYKENGQSSQPNWRGRGRERGRGGR 278

Query: 208 AKQIGVEEDAVKEDGHYANDCNSDKCYNCGRVRHFASD 234
           +    +E     + GHYA DCNSDKCYNCG+V HFA D
Sbjct: 279 SNYSNIECYKCYKYGHYAKDCNSDKCYNCGKVGHFAKD 316

[Close]

BLAST of CmoCh11G011470 vs. NCBI nr
Match: KAE8732752.1 (hypothetical protein F3Y22_tig00001732pilonHSYRG00018 [Hibiscus syriacus])

HSP 1 Score: 190.7 bits (483), Expect = 1.5e-44
Identity = 124/218 (56.88%), Postives = 146/218 (66.97%), Query Frame = 0


Query: 28  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIV 87
           GKVFKG DRVKQVRLQTL GELES+KMKELESVSDYITRVQTVVNQLN N E L E R+V
Sbjct: 99  GKVFKGADRVKQVRLQTLRGELESIKMKELESVSDYITRVQTVVNQLNCNGEALTEARVV 158

Query: 88  EKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHEQRKK--KEETLDQAVQTKHQ 147
           EKILRSLT+NFENVVC IEESKDLAT T++EL GS EAHEQRKK  KEETL+QA+QTK  
Sbjct: 159 EKILRSLTDNFENVVCAIEESKDLATLTINELTGSLEAHEQRKKKRKEETLEQALQTKAL 218

Query: 148 SKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAAVM----KDTIRRRDSR 207
            K ++    + F+ +             +         +  +++      +   R R  R
Sbjct: 219 IKDEKVFYSQNFRGKGRGRGGRGYGRGGQGDSHEGYYKENGQSSQPNWRGRGRGRGRGGR 278

Query: 208 AKQIGVEEDAVKEDGHYANDCNSDKCYNCGRVRHFASD 234
           +    +E     + GHYA DCNSDKCYNCG+V HFA D
Sbjct: 279 SNYSNIECYKCYKYGHYAKDCNSDKCYNCGKVGHFAKD 316

[Close]

BLAST of CmoCh11G011470 vs. NCBI nr
Match: KAE8705809.1 (hypothetical protein F3Y22_tig00110418pilonHSYRG00346 [Hibiscus syriacus])

HSP 1 Score: 190.3 bits (482), Expect = 1.9e-44
Identity = 124/218 (56.88%), Postives = 146/218 (66.97%), Query Frame = 0


Query: 28  GKVFKGTDRVKQVRLQTLHGELESMKMKELESVSDYITRVQTVVNQLNRNEEMLPETRIV 87
           GKVFKG DRVKQVRLQTL  ELES+KMKELESVSDYITRVQTVVNQLNRN E L E R++
Sbjct: 99  GKVFKGADRVKQVRLQTLRDELESIKMKELESVSDYITRVQTVVNQLNRNGEALTEARVM 158

Query: 88  EKILRSLTNNFENVVCTIEESKDLATFTVDELAGSHEAHEQR--KKKEETLDQAVQTKHQ 147
           EKILRSLT+NFENVVC IEESKDLAT TV+EL GS EAHEQR  KKKEETL+QA+QTK  
Sbjct: 159 EKILRSLTDNFENVVCAIEESKDLATLTVNELTGSLEAHEQRKKKKKEETLEQALQTKAL 218

Query: 148 SKMKRYSTLKIFKVE------VVVVEAAEMVVEAAEMVKVVKAA----VMKDTIRRRDSR 207
            K ++    + F+ +             +         +  +++      +   R R  R
Sbjct: 219 IKDEKVFYSQNFRGKGRGRGGRRYGRGGQGDSHEGYYKENGQSSQPNWCGRGRGRGRGGR 278

Query: 208 AKQIGVEEDAVKEDGHYANDCNSDKCYNCGRVRHFASD 234
           +    +E     + GHYA DCNSDKCYNCG+V HFA D
Sbjct: 279 SNYSNIECYKCYKYGHYAKDCNSDKCYNCGKVGHFAKD 316

The following BLAST results are available for this feature:

BLAST of CmoCh11G011470 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G011470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A2XLA3	1.1e-48	68.13	Rhodanese-like domain-containing protein 4A OS=Hibiscus syriacus OX=106335 GN=F3...	[more]
A0A6A3BX58	6.4e-46	57.80	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00016637pilon...	[more]
A0A6A3AD07	4.2e-45	56.88	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110483pilon...	[more]
A0A6A3CZT6	7.1e-45	56.88	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00001732pilon...	[more]
A0A6A3ASE2	9.3e-45	56.88	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110418pilon...	[more]

BLAST of CmoCh11G011470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8676583.1	2.2e-48	68.13	rhodanese-like domain-containing protein 4A [Hibiscus syriacus]	[more]
KAE8721174.1	1.3e-45	57.80	hypothetical protein F3Y22_tig00016637pilonHSYRG00095 [Hibiscus syriacus]	[more]
KAE8702390.1	8.6e-45	56.88	hypothetical protein F3Y22_tig00110483pilonHSYRG00411 [Hibiscus syriacus]	[more]
KAE8732752.1	1.5e-44	56.88	hypothetical protein F3Y22_tig00001732pilonHSYRG00018 [Hibiscus syriacus]	[more]
KAE8705809.1	1.9e-44	56.88	hypothetical protein F3Y22_tig00110418pilonHSYRG00346 [Hibiscus syriacus]	[more]

BLAST of CmoCh11G011470 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	4.10.60.10		coord: 206..234 e-value: 6.6E-6 score: 28.0
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 40..132 e-value: 4.3E-16 score: 58.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..141
None	No IPR available	PANTHER	PTHR34222:SF30	SUBFAMILY NOT NAMED	coord: 29..147
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 29..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G011470.1	CmoCh11G011470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding