CmoCh11G011440 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G011440
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Histone H2A
Location	Cmo_Chr11: 6454619 .. 6455704 (-)
RNA-Seq Expression	CmoCh11G011440
Synteny	CmoCh11G011440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAGAAGAAGCCGATACTCTTAGAAGCCAGAGTTTAGGGTTTTTCGATTTTTCATCTTTGTCAAATTTCATCAGTTTCTTCCGATTCAACAATGAGTTCCACCAAGGGAGGTAGAGGAAAGCCCAAAGCCACCAAATCGGTCACACGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGTAGAATCGCGAGGTTTTTAAAGGCCGGGAAGTACGCCGAGCGAGTCGGTGCTGGAGCCCCGGTGTATTTGTCTGCCGTTCTTGAGTATCTTGCCGCTGAGGTGACCGGATCCTCTGTTCTTTTGCTTTTTTAATTTGTAGTGGTTTTGATATAATGCTGTCTTTGATATAGAGTGTGTTCGTTTGGACTAGTTTTTCAAGTGCTTTAGTAAGGCAGAAATTGGTTTTCTTCTTTAAAATTAGTGTAACCAAGTAATAATCATTTTAGGAACAATCATTTTGGCTTAGAATCTAAAACGATTGATTAAAACAGCACTTCAAGAATCATCTTGTGGTAATTTAACACTTGTAGTTGTAGTATAATCAAGAAAATGTATCTGAGCACAGATTTTAATGGATCGAACTTGGAATTTTGTTTTTGATCTTGTATTTGTCGATTGGAATTAGGTATTGGAGCTTGCTGGGAATGCAGCAAGAGATAACAAGAAGAATCGTATTGTGCCAAGGCATATTCAGCTTGCCGTAAGGAACGATGAGGAGTTGAGCAAGCTTTTGGGGTGCGTAACCATTGCAAATGGAGGAGTTTTGCCCAACATTCACCAAACCCTTTTGCCTAAAAAGGTTGGTAAAGACAAGGGTGATATTGGGTCTGCATCGCAAGAGTTCTAGGGATTTAGGTTGTATTTTGGGGATGATTTTGGTTCTTTTTCCAGAATGACAGAAGTATGATGTTGAAATGAATGGGGTTTGGATCTGTTCCATTTGCTGGGTCATCTTGCTTAGTTTTGCTTAGATGCATATGGTTGGTCTGGATCCATGTAATGTAGTTATCAAGAATGATGATGATGATACTCCCTTCTAGATTTAGAAGTATGAAATGTGTATTTTCTTGTTCAAAGCACTCAA

mRNA sequence

TCAAGAAGAAGCCGATACTCTTAGAAGCCAGAGTTTAGGGTTTTTCGATTTTTCATCTTTGTCAAATTTCATCAGTTTCTTCCGATTCAACAATGAGTTCCACCAAGGGAGGTAGAGGAAAGCCCAAAGCCACCAAATCGGTCACACGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGTAGAATCGCGAGGTTTTTAAAGGCCGGGAAGTACGCCGAGCGAGTCGGTGCTGGAGCCCCGGTGTATTTGTCTGCCGTTCTTGAGTATCTTGCCGCTGAGGTATTGGAGCTTGCTGGGAATGCAGCAAGAGATAACAAGAAGAATCGTATTGTGCCAAGGCATATTCAGCTTGCCGTAAGGAACGATGAGGAGTTGAGCAAGCTTTTGGGGTGCGTAACCATTGCAAATGGAGGAGTTTTGCCCAACATTCACCAAACCCTTTTGCCTAAAAAGGTTGGTAAAGACAAGGGTGATATTGGGTCTGCATCGCAAGAGTTCTAGGGATTTAGGTTGTATTTTGGGGATGATTTTGGTTCTTTTTCCAGAATGACAGAAGTATGATGTTGAAATGAATGGGGTTTGGATCTGTTCCATTTGCTGGGTCATCTTGCTTAGTTTTGCTTAGATGCATATGGTTGGTCTGGATCCATGTAATGTAGTTATCAAGAATGATGATGATGATACTCCCTTCTAGATTTAGAAGTATGAAATGTGTATTTTCTTGTTCAAAGCACTCAA

Coding sequence (CDS)

ATGAGTTCCACCAAGGGAGGTAGAGGAAAGCCCAAAGCCACCAAATCGGTCACACGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGTAGAATCGCGAGGTTTTTAAAGGCCGGGAAGTACGCCGAGCGAGTCGGTGCTGGAGCCCCGGTGTATTTGTCTGCCGTTCTTGAGTATCTTGCCGCTGAGGTATTGGAGCTTGCTGGGAATGCAGCAAGAGATAACAAGAAGAATCGTATTGTGCCAAGGCATATTCAGCTTGCCGTAAGGAACGATGAGGAGTTGAGCAAGCTTTTGGGGTGCGTAACCATTGCAAATGGAGGAGTTTTGCCCAACATTCACCAAACCCTTTTGCCTAAAAAGGTTGGTAAAGACAAGGGTGATATTGGGTCTGCATCGCAAGAGTTCTAG

Protein sequence

MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

Homology

[Close]

BLAST of CmoCh11G011440 vs. ExPASy Swiss-Prot
Match: Q9S9K7 (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.2e-64
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKPKATKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLP KV
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 123 GKDKGDIGSASQEF 137
           GK+KGDIGSASQEF
Sbjct: 129 GKNKGDIGSASQEF 142

[Close]

BLAST of CmoCh11G011440 vs. ExPASy Swiss-Prot
Match: O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 5.0e-64
Identity = 126/134 (94.03%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKPKATKSV+RS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLP KV
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 123 GKDKGDIGSASQEF 137
           GK+KGDIGSASQEF
Sbjct: 129 GKNKGDIGSASQEF 142

[Close]

BLAST of CmoCh11G011440 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.5e-64
Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 2   SSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           ++TKGGRGKPKA+KSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA
Sbjct: 5   ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 64

Query: 62  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKK 121
           AEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKK
Sbjct: 65  AEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 124

Query: 122 VGKDKGDIGSASQEF 137
           VGK KG+IGSASQEF
Sbjct: 125 VGKGKGEIGSASQEF 139

[Close]

BLAST of CmoCh11G011440 vs. ExPASy Swiss-Prot
Match: P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 9.4e-63
Identity = 124/135 (91.85%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 2   SSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           S  KGGRGK K+TKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLA
Sbjct: 4   SGAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLA 63

Query: 62  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKK 121
           AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLPKK
Sbjct: 64  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKK 123

Query: 122 VGKDKGDIGSASQEF 137
            GKDKG+IGSASQEF
Sbjct: 124 SGKDKGEIGSASQEF 138

[Close]

BLAST of CmoCh11G011440 vs. ExPASy Swiss-Prot
Match: A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.6e-60
Identity = 120/131 (91.60%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 6   GGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 65
           GGRGK K +KSV+RS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 66  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKVGKD 125
           ELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQTLLPKK GKD
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKD 127

Query: 126 KGDIGSASQEF 137
           K DIGSASQEF
Sbjct: 128 KADIGSASQEF 138

[Close]

BLAST of CmoCh11G011440 vs. ExPASy TrEMBL
Match: A0A6J1I3J2 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111470214 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.0e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60
           MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 1   MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK 120
           AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK
Sbjct: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK 120

Query: 121 KVGKDKGDIGSASQEF 137
           KVGKDKGDIGSASQEF
Sbjct: 121 KVGKDKGDIGSASQEF 136

[Close]

BLAST of CmoCh11G011440 vs. ExPASy TrEMBL
Match: A0A6J1F184 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111441201 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.0e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60
           MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 1   MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK 120
           AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK
Sbjct: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK 120

Query: 121 KVGKDKGDIGSASQEF 137
           KVGKDKGDIGSASQEF
Sbjct: 121 KVGKDKGDIGSASQEF 136

[Close]

BLAST of CmoCh11G011440 vs. ExPASy TrEMBL
Match: A0A6J1HAT5 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111462131 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.2e-66
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60
           MSSTKGGRGKP+ATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 1   MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK 120
           AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPK
Sbjct: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 120

Query: 121 KVGKDKGDIGSASQEF 137
           KVGKDKGDIGSASQEF
Sbjct: 121 KVGKDKGDIGSASQEF 136

[Close]

BLAST of CmoCh11G011440 vs. ExPASy TrEMBL
Match: A0A6J1I0R4 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111467937 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.7e-65
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60
           MSSTKGGRGKP+ATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 1   MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK 120
           AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPK
Sbjct: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 120

Query: 121 KVGKDKGDIGSASQEF 137
           KVGKDK DIGSASQEF
Sbjct: 121 KVGKDKVDIGSASQEF 136

[Close]

BLAST of CmoCh11G011440 vs. ExPASy TrEMBL
Match: A0A5D3CFR7 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003450 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.7e-65
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKPKATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKKV
Sbjct: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 126

Query: 123 GKDKGDIGSASQEF 137
           GKDKGDIGSASQEF
Sbjct: 127 GKDKGDIGSASQEF 140

[Close]

BLAST of CmoCh11G011440 vs. NCBI nr
Match: XP_022933937.1 (probable histone H2AXb [Cucurbita moschata] >XP_022971521.1 probable histone H2AXb [Cucurbita maxima] >XP_023530290.1 probable histone H2AXb [Cucurbita pepo subsp. pepo] >KAG7037529.1 putative histone H2AXb [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.8 bits (678), Expect = 2.1e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60
           MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 1   MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK 120
           AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK
Sbjct: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK 120

Query: 121 KVGKDKGDIGSASQEF 137
           KVGKDKGDIGSASQEF
Sbjct: 121 KVGKDKGDIGSASQEF 136

[Close]

BLAST of CmoCh11G011440 vs. NCBI nr
Match: XP_022961601.1 (probable histone H2AXb [Cucurbita moschata] >XP_023515960.1 probable histone H2AXb [Cucurbita pepo subsp. pepo] >KAG6590420.1 putative histone H2AXb, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590422.1 putative histone H2AXb, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023969.1 putative histone H2AXb, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.4 bits (664), Expect = 8.8e-66
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MSSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60
           MSSTKGGRGKP+ATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL
Sbjct: 1   MSSTKGGRGKPQATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPK 120
           AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPK
Sbjct: 61  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 120

Query: 121 KVGKDKGDIGSASQEF 137
           KVGKDKGDIGSASQEF
Sbjct: 121 KVGKDKGDIGSASQEF 136

[Close]

BLAST of CmoCh11G011440 vs. NCBI nr
Match: XP_038878621.1 (histone H2AX [Benincasa hispida])

HSP 1 Score: 258.1 bits (658), Expect = 4.4e-65
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 2   SSTKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 61
           SSTKGGRGKPKATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA
Sbjct: 6   SSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 65

Query: 62  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKK 121
           AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKK
Sbjct: 66  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 125

Query: 122 VGKDKGDIGSASQEF 137
           VGKDKGDIGSASQEF
Sbjct: 126 VGKDKGDIGSASQEF 140

[Close]

BLAST of CmoCh11G011440 vs. NCBI nr
Match: KAE8653389.1 (hypothetical protein Csa_007458 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 9.7e-65
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKPKATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 76  STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 135

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKKV
Sbjct: 136 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 195

Query: 123 GKDKGDIGSASQEF 137
           GKDKGDIGSASQEF
Sbjct: 196 GKDKGDIGSASQEF 209

[Close]

BLAST of CmoCh11G011440 vs. NCBI nr
Match: XP_022154594.1 (probable histone H2AXb [Momordica charantia])

HSP 1 Score: 256.9 bits (655), Expect = 9.7e-65
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           STKGGRGKPKATKSV+RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 7   STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLPKKV
Sbjct: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 126

Query: 123 GKDKGDIGSASQEF 137
           GKDKGDIGSASQEF
Sbjct: 127 GKDKGDIGSASQEF 140

[Close]

BLAST of CmoCh11G011440 vs. TAIR 10
Match: AT1G54690.1 (gamma histone variant H2AX )

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-65
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKPKATKSV+RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLP KV
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 123 GKDKGDIGSASQEF 137
           GK+KGDIGSASQEF
Sbjct: 129 GKNKGDIGSASQEF 142

[Close]

BLAST of CmoCh11G011440 vs. TAIR 10
Match: AT1G08880.1 (Histone superfamily protein )

HSP 1 Score: 245.0 bits (624), Expect = 3.6e-65
Identity = 126/134 (94.03%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 3   STKGGRGKPKATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 62
           +TKGGRGKPKATKSV+RS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 63  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 122
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLLP KV
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 123 GKDKGDIGSASQEF 137
           GK+KGDIGSASQEF
Sbjct: 129 GKNKGDIGSASQEF 142

[Close]

BLAST of CmoCh11G011440 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-50
Identity = 105/124 (84.68%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 7   GRGKP----KATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66
           GRGK      A KS +RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 126
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of CmoCh11G011440 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-50
Identity = 105/124 (84.68%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 7   GRGKP----KATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66
           GRGK      A KS +RS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 126
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of CmoCh11G011440 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 195.3 bits (495), Expect = 3.2e-50
Identity = 104/124 (83.87%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 7   GRGKP----KATKSVTRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 66
           GRGK      A K+ TRS KAGLQFPVGRIARFLK GKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 67  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGCVTIANGGVLPNIHQTLLPKKV 126
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

The following BLAST results are available for this feature:

BLAST of CmoCh11G011440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S9K7	2.2e-64	94.78	Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1	[more]
O04848	5.0e-64	94.03	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
O65759	6.5e-64	93.33	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
P35063	9.4e-63	91.85	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
A2ZL69	2.6e-60	91.60	Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3...	[more]

BLAST of CmoCh11G011440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I3J2	1.0e-67	100.00	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111470214 PE=3 SV=1	[more]
A0A6J1F184	1.0e-67	100.00	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111441201 PE=3 SV=1	[more]
A0A6J1HAT5	4.2e-66	98.53	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111462131 PE=3 SV=1	[more]
A0A6J1I0R4	4.7e-65	97.79	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111467937 PE=3 SV=1	[more]
A0A5D3CFR7	4.7e-65	98.51	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003450 PE...	[more]

BLAST of CmoCh11G011440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933937.1	2.1e-67	100.00	probable histone H2AXb [Cucurbita moschata] >XP_022971521.1 probable histone H2A...	[more]
XP_022961601.1	8.8e-66	98.53	probable histone H2AXb [Cucurbita moschata] >XP_023515960.1 probable histone H2A...	[more]
XP_038878621.1	4.4e-65	98.52	histone H2AX [Benincasa hispida]	[more]
KAE8653389.1	9.7e-65	98.51	hypothetical protein Csa_007458 [Cucumis sativus]	[more]
XP_022154594.1	9.7e-65	98.51	probable histone H2AXb [Momordica charantia]	[more]

BLAST of CmoCh11G011440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54690.1	1.6e-65	94.78	gamma histone variant H2AX	[more]
AT1G08880.1	3.6e-65	94.03	Histone superfamily protein	[more]
AT4G27230.1	1.1e-50	84.68	histone H2A 2	[more]
AT4G27230.2	1.1e-50	84.68	histone H2A 2	[more]
AT1G51060.1	3.2e-50	83.87	histone H2A 10	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 44..59 score: 84.58 coord: 15..37 score: 68.12 coord: 73..87 score: 75.49 coord: 59..72 score: 89.46 coord: 101..119 score: 70.13
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 4..124 e-value: 1.1E-75 score: 267.4
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 9..121 e-value: 4.16864E-67 score: 196.787
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 12..90 e-value: 3.4E-14 score: 53.3
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..129 e-value: 1.7E-62 score: 210.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 18..121
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 93..126 e-value: 3.5E-18 score: 65.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR23430:SF322	HISTONE H2A	coord: 2..134
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 2..134
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 23..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G011440.1	CmoCh11G011440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity