CmoCh11G011310 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G011310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	SWI/SNF complex subunit SWI3D-like
Location	Cmo_Chr11: 6379084 .. 6380778 (-)
RNA-Seq Expression	CmoCh11G011310
Synteny	CmoCh11G011310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTTACTACTTTGCTTGGAGGTGCACGTCAACTTTGTTGATTCTAGATTCTTGCTATCTTTTTCCTTTTCTTCTTTTATATTCAGTTCAAATAATTTTCTATCCTAGCTAGAAAACGTTGGTTTATCTTGAACCTGCTTTAGCCTTCTAGAAGTTTTCTGTGAGATATGTGTTTACATGAACCAAGTTTTGGCAGTTATCTTTATTACAAGTTCTCATTCATTGACTTCTGTTGTTGCCCAGAATTACCTTCAGTTAGGTACTATCATGTTTATCATATTTATAGATGGAGCAGAAATGCTTAAGCCTACTCTTTGTTCTTATCTGGAATTAGCACTCCCTATAATCATAAATTTTATTCCTGGTTGTTTAAATTATTAAATACCTCCTTTTCAGGCTGCATTCCTTGCACGCTTAGTTGGATCTGATGTTGTCAGTGCATCAGCTCATTTTTCCTTGAAAAGCATGTCTCAGAAATCTCCCAGTTTAGATCTGGCTACAAGACACTGCTTTATTTTAGAAGATCCACTAGATGACAAGGCACAAGCTAATTCAGAGAGGTACTTGACGTTGAGACTTGACATGTTTGTTTCAGTTTAGTTCTATTCTTTGATCACAACTGATACTATTGCAGGGTTGTCAATGTGGAAGCTCAGCAAAATGTCAATGAACAGTGTGAAAAACAGAGGAAAGACAATTCTACTTCAGTTTTAGATGATAGTGCCTTATCGACTACTAACAGTATTTACAAAAATGGAGAATCTGTGACAGAGGAAACTACAATGGAGAATAGAAATTCTGCAGATGCTACTAAAGAACACGATCCAATGGTTAATCATGGTTCAGATGTAACTAATAAATTGAAAGAACTGACAGAACCAGAAGTGCCCAAGGATGATAGAACAAGCATTGTTAAGGAAACTGAAAATATGGAATCAAAATTGACAACAAATACAGTTCAAAAATTGGGAGAAGAAACTTCTGTTGAAAAGCCATCACAATCTACGTTGTTATCAAAGGATATACATATGTCAGATCTACGGAATGCTGAAAAAACTGAGATTCAGAAACAAGTTCCATCTCCTTCTGTCAATACTTCAAAAATAGATGATGTGCCAAATCCTTTACCTTCCGTGAATGAACTTCAGCCACTGGTTGCTGCCAATTCAGTGAAAGTAGCCTCAAGTGATGTAGCTATGGTATCTGATCCTCGAGATAAGAATGAACCTGCACAAACTGAAACATCTAAATCTGTGGTTGACCAGGGAGCAAGCAAGGTCTCTGATTCTTTGCCCACAGAAGAGAATGCACCTCCACAGCCAGTTAAACCAAATCCAGTTATTGATAAAGGAACAGGTGCGTGTTTCTTTTGTAGTTTTCCTCTAGTTTTAATTTTGTAGTCTATGGACCTCCCACCAGGCAGGTTACATTTTTTAGTTTTTTAAGAAACTGTTCAAGGCTTTCCAAAGTTTGCACGTTCCAAGGGGATGGGGAAATACAAGCTATTTCCTATTAAACAATATTGACTTCGATTTGTTTTTAGGAACTTTATCATGCACTGTGATGTATGTTTCTGCGAAAAAGGATCATCAGGAACCGCCAAAGGAGTTTAGGACTTCTGTTAAGTTTGCTAGGAACTCTGAACTTGGGATGTCCAATGTCTTAACGCCAATTTATTTGGTCGAATCTTAG

mRNA sequence

ATGAACTTACTACTTTGCTTGGAGGCTGCATTCCTTGCACGCTTAGTTGGATCTGATGTTGTCAGTGCATCAGCTCATTTTTCCTTGAAAAGCATGTCTCAGAAATCTCCCAGTTTAGATCTGGCTACAAGACACTGCTTTATTTTAGAAGATCCACTAGATGACAAGGCACAAGCTAATTCAGAGAGGGTTGTCAATGTGGAAGCTCAGCAAAATGTCAATGAACAGTGTGAAAAACAGAGGAAAGACAATTCTACTTCAGTTTTAGATGATAGTGCCTTATCGACTACTAACAGTATTTACAAAAATGGAGAATCTGTGACAGAGGAAACTACAATGGAGAATAGAAATTCTGCAGATGCTACTAAAGAACACGATCCAATGGTTAATCATGGTTCAGATGTAACTAATAAATTGAAAGAACTGACAGAACCAGAAGTGCCCAAGGATGATAGAACAAGCATTGTTAAGGAAACTGAAAATATGGAATCAAAATTGACAACAAATACAGTTCAAAAATTGGGAGAAGAAACTTCTGTTGAAAAGCCATCACAATCTACGTTGTTATCAAAGGATATACATATGTCAGATCTACGGAATGCTGAAAAAACTGAGATTCAGAAACAAGTTCCATCTCCTTCTGTCAATACTTCAAAAATAGATGATGTGCCAAATCCTTTACCTTCCGTGAATGAACTTCAGCCACTGGTTGCTGCCAATTCAGTGAAAGTAGCCTCAAGTGATGTAGCTATGGTATCTGATCCTCGAGATAAGAATGAACCTGCACAAACTGAAACATCTAAATCTGTGGTTGACCAGGGAGCAAGCAAGGTCTCTGATTCTTTGCCCACAGAAGAGAATGCACCTCCACAGCCAGTTAAACCAAATCCAGTTATTGATAAAGGAACAGGAACTTTATCATGCACTGTGATGTATGTTTCTGCGAAAAAGGATCATCAGGAACCGCCAAAGGAGTTTAGGACTTCTGTTAAGTTTGCTAGGAACTCTGAACTTGGGATGTCCAATGTCTTAACGCCAATTTATTTGGTCGAATCTTAG

Coding sequence (CDS)

ATGAACTTACTACTTTGCTTGGAGGCTGCATTCCTTGCACGCTTAGTTGGATCTGATGTTGTCAGTGCATCAGCTCATTTTTCCTTGAAAAGCATGTCTCAGAAATCTCCCAGTTTAGATCTGGCTACAAGACACTGCTTTATTTTAGAAGATCCACTAGATGACAAGGCACAAGCTAATTCAGAGAGGGTTGTCAATGTGGAAGCTCAGCAAAATGTCAATGAACAGTGTGAAAAACAGAGGAAAGACAATTCTACTTCAGTTTTAGATGATAGTGCCTTATCGACTACTAACAGTATTTACAAAAATGGAGAATCTGTGACAGAGGAAACTACAATGGAGAATAGAAATTCTGCAGATGCTACTAAAGAACACGATCCAATGGTTAATCATGGTTCAGATGTAACTAATAAATTGAAAGAACTGACAGAACCAGAAGTGCCCAAGGATGATAGAACAAGCATTGTTAAGGAAACTGAAAATATGGAATCAAAATTGACAACAAATACAGTTCAAAAATTGGGAGAAGAAACTTCTGTTGAAAAGCCATCACAATCTACGTTGTTATCAAAGGATATACATATGTCAGATCTACGGAATGCTGAAAAAACTGAGATTCAGAAACAAGTTCCATCTCCTTCTGTCAATACTTCAAAAATAGATGATGTGCCAAATCCTTTACCTTCCGTGAATGAACTTCAGCCACTGGTTGCTGCCAATTCAGTGAAAGTAGCCTCAAGTGATGTAGCTATGGTATCTGATCCTCGAGATAAGAATGAACCTGCACAAACTGAAACATCTAAATCTGTGGTTGACCAGGGAGCAAGCAAGGTCTCTGATTCTTTGCCCACAGAAGAGAATGCACCTCCACAGCCAGTTAAACCAAATCCAGTTATTGATAAAGGAACAGGAACTTTATCATGCACTGTGATGTATGTTTCTGCGAAAAAGGATCATCAGGAACCGCCAAAGGAGTTTAGGACTTCTGTTAAGTTTGCTAGGAACTCTGAACTTGGGATGTCCAATGTCTTAACGCCAATTTATTTGGTCGAATCTTAG

Protein sequence

MNLLLCLEAAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVEAQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDPMVNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQSTLLSKDIHMSDLRNAEKTEIQKQVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSDVAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKGTGTLSCTVMYVSAKKDHQEPPKEFRTSVKFARNSELGMSNVLTPIYLVES

Homology

[Close]

BLAST of CmoCh11G011310 vs. ExPASy Swiss-Prot
Match: Q8VY05 (SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana OX=3702 GN=SWI3D PE=1 SV=3)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-06
Identity = 61/207 (29.47%), Postives = 99/207 (47.83%), Query Frame = 0


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 68
           AAFL RL GSDV +ASA  S+KS+   S  L LATRHC+ILEDP D+K      +  + +
Sbjct: 551 AAFLVRLAGSDVATASARASIKSLHSNSGML-LATRHCYILEDPPDNKKDPTKSKSCSAD 610

Query: 69  AQQN------VNEQCEKQRKDNSTSV-LDDSALSTTNSIYKNGESVTEETTMENRNSADA 128
           A+ N       ++  EK +K    S+  DD  +  T++  +  +SV+EE    +R     
Sbjct: 611 AEGNDDNSHKDDQPEEKSKKAEEVSLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENST 670

Query: 129 TKEHDPMVNHGSD--VTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETS 188
           TK         S    T+  ++  +   P  D+ S  +  E ++     ++  K   +++
Sbjct: 671 TKLDAVQEKRSSKPVTTDNSEKPVDIICPSQDKCSGKELQEPLKDGNKLSSENKDASQST 730

Query: 189 VEKPSQSTL---LSKDIHMSDLRNAEK 204
           V + +        S+D+ M D   +EK
Sbjct: 731 VSQSAADASQPEASRDVEMKDTLQSEK 756

[Close]

BLAST of CmoCh11G011310 vs. ExPASy TrEMBL
Match: A0A6J1ETV7 (SWI/SNF complex subunit SWI3D-like OS=Cucurbita moschata OX=3662 GN=LOC111437510 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 5.0e-151
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 68
           AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE
Sbjct: 543 AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 602

Query: 69  AQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDPM 128
           AQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDPM
Sbjct: 603 AQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDPM 662

Query: 129 VNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQSTL 188
           VNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQSTL
Sbjct: 663 VNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQSTL 722

Query: 189 LSKDIHMSDLRNAEKTEIQKQVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD 248
           LSKDIHMSDLRNAEKTEIQKQVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD
Sbjct: 723 LSKDIHMSDLRNAEKTEIQKQVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD 782

Query: 249 VAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKGT 304
           VAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKGT
Sbjct: 783 VAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKGT 837

[Close]

BLAST of CmoCh11G011310 vs. ExPASy TrEMBL
Match: A0A6J1I5J3 (SWI/SNF complex subunit SWI3D-like OS=Cucurbita maxima OX=3661 GN=LOC111469426 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 6.5e-127
Identity = 272/373 (72.92%), Postives = 282/373 (75.60%), Query Frame = 0


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 68
           AAFLARLVGSDV  ASAHFSLKS+SQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE
Sbjct: 543 AAFLARLVGSDVAGASAHFSLKSISQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 602

Query: 69  AQQNVNEQCEKQRKDNSTSVLDDSALSTTN------------------------------ 128
           AQQNVNEQCEKQRKDNSTSVLDD ALSTTN                              
Sbjct: 603 AQQNVNEQCEKQRKDNSTSVLDDRALSTTNIDYKNGESETEETTMENRNSSDATKEHDPM 662

Query: 129 ------------------------------------SI------------YKNGESVTEE 188
                                               S+            YKNGESVTEE
Sbjct: 663 VNHGSDGTNKLKELTEPEAQQNVNEQCEKQRKDNSTSVLDDRALSTTNIDYKNGESVTEE 722

Query: 189 TTMENRNSADATKEHDPMVNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNT 248
           TTMENRNS+DATKEHDPMVNHGSD TNKLKELTEPEVPKDDRT IVKETENMESKLTTNT
Sbjct: 723 TTMENRNSSDATKEHDPMVNHGSDGTNKLKELTEPEVPKDDRTGIVKETENMESKLTTNT 782

Query: 249 VQKLGEETSVEKPSQSTLLSKDIHMSDLRNAEKTEIQKQVPSPSVNTSKIDDVPNPLPSV 304
            +KLGEETS EKPSQSTLLSKDIH+SDL+ AEKTEIQ+Q PSPSVNTSKIDDVPNPLPSV
Sbjct: 783 FEKLGEETSFEKPSQSTLLSKDIHISDLQYAEKTEIQRQDPSPSVNTSKIDDVPNPLPSV 842

[Close]

BLAST of CmoCh11G011310 vs. ExPASy TrEMBL
Match: A0A6J1C5U7 (SWI/SNF complex subunit SWI3D OS=Momordica charantia OX=3673 GN=LOC111007653 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 8.9e-100
Identity = 216/298 (72.48%), Postives = 248/298 (83.22%), Query Frame = 0


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDK-AQANSERVVNV 68
           AAFLARLVGSDV SASAHFSLKS+SQKSPSL+LATRHCFILEDP DDK AQ+NSE VVNV
Sbjct: 545 AAFLARLVGSDVASASAHFSLKSISQKSPSLELATRHCFILEDPPDDKNAQSNSESVVNV 604

Query: 69  EAQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDP 128
           EAQ+N NEQCEKQR+D+STSVLDD ALST  S  KNGESVT+ETT++N NS+DA +EHDP
Sbjct: 605 EAQKNDNEQCEKQRQDDSTSVLDDRALSTNKSNNKNGESVTKETTVDNGNSSDAIREHDP 664

Query: 129 MVNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQST 188
           ++ HGSD T+ L EL EPE+ KD+RT IVKE+EN+ES LTTN V+KLGE T VEKPSQ  
Sbjct: 665 VIIHGSDGTSNLNELREPELLKDERTGIVKESENLESNLTTNPVEKLGEGTHVEKPSQPI 724

Query: 189 LLSKDIHMSDLRNAEKTEIQKQVPSPSVNTSK-IDDVPNPLPSVNELQPLVAANSVKVAS 248
           L S+D+HMSDL +AE+T+ QKQVPS S  TSK +DDVPNPLPSVNE QPL+AANSVK AS
Sbjct: 725 LSSEDVHMSDLEHAERTD-QKQVPSHSAKTSKDLDDVPNPLPSVNEPQPLIAANSVKEAS 784

Query: 249 SDVAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKGTG 305
           +D A+V D   K E +QTETS SVVDQGAS VSDSL + +NA PQPV PN VI+ G G
Sbjct: 785 NDGAVVLDSHKKYETSQTETSNSVVDQGASTVSDSLLSADNAMPQPVNPNSVIESGAG 841

[Close]

BLAST of CmoCh11G011310 vs. ExPASy TrEMBL
Match: A0A6J1GJX9 (SWI/SNF complex subunit SWI3D-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455037 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 8.6e-95
Identity = 206/296 (69.59%), Postives = 240/296 (81.08%), Query Frame = 0


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDD-KAQANSERVVNV 68
           AAFLARLVGSDV SASA FSLKS+SQKSPSL+LATRHCFILEDP DD KA+ANSE +VNV
Sbjct: 541 AAFLARLVGSDVASASARFSLKSVSQKSPSLELATRHCFILEDPPDDQKAKANSESIVNV 600

Query: 69  EAQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDP 128
           EAQ+N  EQC KQR DNSTSVLDD ALS  +   KNGESVT+E T++N NS+DA  EH+P
Sbjct: 601 EAQKNDKEQCAKQRPDNSTSVLDDGALSANDGNNKNGESVTKE-TIDNENSSDAIIEHNP 660

Query: 129 MVNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQST 188
           + NH SD T+ LKEL EPE+P+ +RT IVKE+EN+ESK T+N V+KLGE TS EKPSQ  
Sbjct: 661 ITNHDSDRTSNLKELREPEIPEVERTGIVKESENVESKSTSNPVEKLGEGTSAEKPSQPK 720

Query: 189 LLSKDIHMSDLRNAEKTEIQKQVPSPSVNTSK-IDDVPNPLPSVNELQPLVAANSVKVAS 248
           L  KD+HMSDL++AEKTEIQKQVPS S  T K +DD PN LPS NE QP ++ANSVK AS
Sbjct: 721 LSPKDVHMSDLQHAEKTEIQKQVPSHSAKTKKELDDEPNHLPSANEPQPTISANSVKEAS 780

Query: 249 SDVAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKG 303
            DVA++ D  + NEPA+TETSKSVVDQ ASKV+DSLP+ ENA P PVKP  VI++G
Sbjct: 781 KDVAIIPDSHNGNEPAKTETSKSVVDQEASKVADSLPSTENATPLPVKPTSVIERG 835

[Close]

BLAST of CmoCh11G011310 vs. ExPASy TrEMBL
Match: A0A6J1GK40 (SWI/SNF complex subunit SWI3D-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455037 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 8.6e-95
Identity = 206/296 (69.59%), Postives = 240/296 (81.08%), Query Frame = 0


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDD-KAQANSERVVNV 68
           AAFLARLVGSDV SASA FSLKS+SQKSPSL+LATRHCFILEDP DD KA+ANSE +VNV
Sbjct: 541 AAFLARLVGSDVASASARFSLKSVSQKSPSLELATRHCFILEDPPDDQKAKANSESIVNV 600

Query: 69  EAQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDP 128
           EAQ+N  EQC KQR DNSTSVLDD ALS  +   KNGESVT+E T++N NS+DA  EH+P
Sbjct: 601 EAQKNDKEQCAKQRPDNSTSVLDDGALSANDGNNKNGESVTKE-TIDNENSSDAIIEHNP 660

Query: 129 MVNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQST 188
           + NH SD T+ LKEL EPE+P+ +RT IVKE+EN+ESK T+N V+KLGE TS EKPSQ  
Sbjct: 661 ITNHDSDRTSNLKELREPEIPEVERTGIVKESENVESKSTSNPVEKLGEGTSAEKPSQPK 720

Query: 189 LLSKDIHMSDLRNAEKTEIQKQVPSPSVNTSK-IDDVPNPLPSVNELQPLVAANSVKVAS 248
           L  KD+HMSDL++AEKTEIQKQVPS S  T K +DD PN LPS NE QP ++ANSVK AS
Sbjct: 721 LSPKDVHMSDLQHAEKTEIQKQVPSHSAKTKKELDDEPNHLPSANEPQPTISANSVKEAS 780

Query: 249 SDVAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKG 303
            DVA++ D  + NEPA+TETSKSVVDQ ASKV+DSLP+ ENA P PVKP  VI++G
Sbjct: 781 KDVAIIPDSHNGNEPAKTETSKSVVDQEASKVADSLPSTENATPLPVKPTSVIERG 835

[Close]

BLAST of CmoCh11G011310 vs. NCBI nr
Match: XP_022931284.1 (SWI/SNF complex subunit SWI3D-like [Cucurbita moschata])

HSP 1 Score: 543.9 bits (1400), Expect = 1.0e-150
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 68
           AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE
Sbjct: 543 AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 602

Query: 69  AQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDPM 128
           AQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDPM
Sbjct: 603 AQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDPM 662

Query: 129 VNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQSTL 188
           VNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQSTL
Sbjct: 663 VNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQSTL 722

Query: 189 LSKDIHMSDLRNAEKTEIQKQVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD 248
           LSKDIHMSDLRNAEKTEIQKQVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD
Sbjct: 723 LSKDIHMSDLRNAEKTEIQKQVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD 782

Query: 249 VAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKGT 304
           VAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKGT
Sbjct: 783 VAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKGT 837

[Close]

BLAST of CmoCh11G011310 vs. NCBI nr
Match: KAG7022293.1 (SWI/SNF complex subunit SWI3D, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 536.6 bits (1381), Expect = 1.6e-148
Identity = 290/295 (98.31%), Postives = 293/295 (99.32%), Query Frame = 0


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 68
           AAFLARLVGSD+ SASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE
Sbjct: 543 AAFLARLVGSDIASASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 602

Query: 69  AQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDPM 128
           AQQNVNEQCEKQRKDNSTSVLDDSALSTTNS YKNGESVTEETTMENRNSADATKEHDPM
Sbjct: 603 AQQNVNEQCEKQRKDNSTSVLDDSALSTTNSNYKNGESVTEETTMENRNSADATKEHDPM 662

Query: 129 VNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQSTL 188
           VNHGSDVTNKLKELTEPEVP+DDRTSIVKETENMESKLTTNTV+KLGEETSVEKPSQSTL
Sbjct: 663 VNHGSDVTNKLKELTEPEVPEDDRTSIVKETENMESKLTTNTVEKLGEETSVEKPSQSTL 722

Query: 189 LSKDIHMSDLRNAEKTEIQKQVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD 248
           LSKDIHMSDLRNAEKTEIQKQVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD
Sbjct: 723 LSKDIHMSDLRNAEKTEIQKQVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD 782

Query: 249 VAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKGT 304
           VAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKGT
Sbjct: 783 VAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKGT 837

[Close]

BLAST of CmoCh11G011310 vs. NCBI nr
Match: KAG6588443.1 (SWI/SNF complex subunit SWI3D, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 515.0 bits (1325), Expect = 5.1e-142
Identity = 280/295 (94.92%), Postives = 286/295 (96.95%), Query Frame = 0


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 68
           A+FLARLVGSDV SASAHFSLKS+S+KSPSLDLATRHCFILEDPLDDKAQANSERVVNVE
Sbjct: 543 ASFLARLVGSDVASASAHFSLKSISRKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 602

Query: 69  AQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDPM 128
           AQQNVNEQCEKQRKDNSTSVLDD ALSTTNS YKNGESVTEETTMENRNSADATKE DPM
Sbjct: 603 AQQNVNEQCEKQRKDNSTSVLDDRALSTTNSSYKNGESVTEETTMENRNSADATKERDPM 662

Query: 129 VNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQSTL 188
           VNHGSD TNKLKELTEPEVPKDDRT +VKETENMESKLTTNTV+KLGEETSVEKPSQSTL
Sbjct: 663 VNHGSDGTNKLKELTEPEVPKDDRTGVVKETENMESKLTTNTVEKLGEETSVEKPSQSTL 722

Query: 189 LSKDIHMSDLRNAEKTEIQKQVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD 248
           LSKDIHMSDL+ AEKTEIQK VPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD
Sbjct: 723 LSKDIHMSDLQYAEKTEIQKPVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD 782

Query: 249 VAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKGT 304
           VAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENA PQPVKPNPVIDKGT
Sbjct: 783 VAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENATPQPVKPNPVIDKGT 837

[Close]

BLAST of CmoCh11G011310 vs. NCBI nr
Match: XP_023522428.1 (SWI/SNF complex subunit SWI3D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 514.6 bits (1324), Expect = 6.7e-142
Identity = 280/295 (94.92%), Postives = 283/295 (95.93%), Query Frame = 0


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 68
           AAFLARLVG DV SASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQAN ERVVNVE
Sbjct: 542 AAFLARLVGPDVASASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANPERVVNVE 601

Query: 69  AQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDPM 128
           AQQNVNEQCEKQRKD STSVLDD ALSTTNS YKNGESVTEETTMENRNSADATKEHDPM
Sbjct: 602 AQQNVNEQCEKQRKDTSTSVLDDRALSTTNSSYKNGESVTEETTMENRNSADATKEHDPM 661

Query: 129 VNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQSTL 188
           VNHGSD TNKLKELTEPEVPKDDRT +VKETENMESKLTTNTV+KLGEETSVEKPSQSTL
Sbjct: 662 VNHGSDGTNKLKELTEPEVPKDDRTGVVKETENMESKLTTNTVEKLGEETSVEKPSQSTL 721

Query: 189 LSKDIHMSDLRNAEKTEIQKQVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD 248
           LSKDIHMSDL+ AEKTEIQK VPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD
Sbjct: 722 LSKDIHMSDLQYAEKTEIQKPVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD 781

Query: 249 VAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKGT 304
            AMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENA PQPVKPNPVIDKGT
Sbjct: 782 AAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENATPQPVKPNPVIDKGT 836

[Close]

BLAST of CmoCh11G011310 vs. NCBI nr
Match: XP_023529451.1 (SWI/SNF complex subunit SWI3D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 514.6 bits (1324), Expect = 6.7e-142
Identity = 280/295 (94.92%), Postives = 283/295 (95.93%), Query Frame = 0


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 68
           AAFLARLVG DV SASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQAN ERVVNVE
Sbjct: 543 AAFLARLVGPDVASASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANPERVVNVE 602

Query: 69  AQQNVNEQCEKQRKDNSTSVLDDSALSTTNSIYKNGESVTEETTMENRNSADATKEHDPM 128
           AQQNVNEQCEKQRKD STSVLDD ALSTTNS YKNGESVTEETTMENRNSADATKEHDPM
Sbjct: 603 AQQNVNEQCEKQRKDTSTSVLDDRALSTTNSSYKNGESVTEETTMENRNSADATKEHDPM 662

Query: 129 VNHGSDVTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVEKPSQSTL 188
           VNHGSD TNKLKELTEPEVPKDDRT +VKETENMESKLTTNTV+KLGEETSVEKPSQSTL
Sbjct: 663 VNHGSDGTNKLKELTEPEVPKDDRTGVVKETENMESKLTTNTVEKLGEETSVEKPSQSTL 722

Query: 189 LSKDIHMSDLRNAEKTEIQKQVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD 248
           LSKDIHMSDL+ AEKTEIQK VPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD
Sbjct: 723 LSKDIHMSDLQYAEKTEIQKPVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASSD 782

Query: 249 VAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENAPPQPVKPNPVIDKGT 304
            AMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENA PQPVKPNPVIDKGT
Sbjct: 783 AAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENATPQPVKPNPVIDKGT 837

[Close]

BLAST of CmoCh11G011310 vs. TAIR 10
Match: AT4G34430.1 (DNA-binding family protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-07
Identity = 61/207 (29.47%), Postives = 99/207 (47.83%), Query Frame = 0


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 68
           AAFL RL GSDV +ASA  S+KS+   S  L LATRHC+ILEDP D+K      +  + +
Sbjct: 551 AAFLVRLAGSDVATASARASIKSLHSNSGML-LATRHCYILEDPPDNKKDPTKSKSCSAD 610

Query: 69  AQQN------VNEQCEKQRKDNSTSV-LDDSALSTTNSIYKNGESVTEETTMENRNSADA 128
           A+ N       ++  EK +K    S+  DD  +  T++  +  +SV+EE    +R     
Sbjct: 611 AEGNDDNSHKDDQPEEKSKKAEEVSLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENST 670

Query: 129 TKEHDPMVNHGSD--VTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETS 188
           TK         S    T+  ++  +   P  D+ S  +  E ++     ++  K   +++
Sbjct: 671 TKLDAVQEKRSSKPVTTDNSEKPVDIICPSQDKCSGKELQEPLKDGNKLSSENKDASQST 730

Query: 189 VEKPSQSTL---LSKDIHMSDLRNAEK 204
           V + +        S+D+ M D   +EK
Sbjct: 731 VSQSAADASQPEASRDVEMKDTLQSEK 756

[Close]

BLAST of CmoCh11G011310 vs. TAIR 10
Match: AT4G34430.4 (DNA-binding family protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-07
Identity = 61/207 (29.47%), Postives = 99/207 (47.83%), Query Frame = 0


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 68
           AAFL RL GSDV +ASA  S+KS+   S  L LATRHC+ILEDP D+K      +  + +
Sbjct: 551 AAFLVRLAGSDVATASARASIKSLHSNSGML-LATRHCYILEDPPDNKKDPTKSKSCSAD 610

Query: 69  AQQN------VNEQCEKQRKDNSTSV-LDDSALSTTNSIYKNGESVTEETTMENRNSADA 128
           A+ N       ++  EK +K    S+  DD  +  T++  +  +SV+EE    +R     
Sbjct: 611 AEGNDDNSHKDDQPEEKSKKAEEVSLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENST 670

Query: 129 TKEHDPMVNHGSD--VTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETS 188
           TK         S    T+  ++  +   P  D+ S  +  E ++     ++  K   +++
Sbjct: 671 TKLDAVQEKRSSKPVTTDNSEKPVDIICPSQDKCSGKELQEPLKDGNKLSSENKDASQST 730

Query: 189 VEKPSQSTL---LSKDIHMSDLRNAEK 204
           V + +        S+D+ M D   +EK
Sbjct: 731 VSQSAADASQPEASRDVEMKDTLQSEK 756

[Close]

BLAST of CmoCh11G011310 vs. TAIR 10
Match: AT4G34430.2 (DNA-binding family protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-07
Identity = 61/207 (29.47%), Postives = 99/207 (47.83%), Query Frame = 0


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 68
           AAFL RL GSDV +ASA  S+KS+   S  L LATRHC+ILEDP D+K      +  + +
Sbjct: 551 AAFLVRLAGSDVATASARASIKSLHSNSGML-LATRHCYILEDPPDNKKDPTKSKSCSAD 610

Query: 69  AQQN------VNEQCEKQRKDNSTSV-LDDSALSTTNSIYKNGESVTEETTMENRNSADA 128
           A+ N       ++  EK +K    S+  DD  +  T++  +  +SV+EE    +R     
Sbjct: 611 AEGNDDNSHKDDQPEEKSKKAEEVSLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENST 670

Query: 129 TKEHDPMVNHGSD--VTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETS 188
           TK         S    T+  ++  +   P  D+ S  +  E ++     ++  K   +++
Sbjct: 671 TKLDAVQEKRSSKPVTTDNSEKPVDIICPSQDKCSGKELQEPLKDGNKLSSENKDASQST 730

Query: 189 VEKPSQSTL---LSKDIHMSDLRNAEK 204
           V + +        S+D+ M D   +EK
Sbjct: 731 VSQSAADASQPEASRDVEMKDTLQSEK 756

[Close]

BLAST of CmoCh11G011310 vs. TAIR 10
Match: AT4G34430.3 (DNA-binding family protein )

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-07
Identity = 60/205 (29.27%), Postives = 97/205 (47.32%), Query Frame = 0


Query: 9   AAFLARLVGSDVVSASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVE 68
           AAFL RL GSDV +ASA  S+KS+   S  L LATRHC+ILEDP D+K      +  + E
Sbjct: 551 AAFLVRLAGSDVATASARASIKSLHSNSGML-LATRHCYILEDPPDNKKDPTKSKSADAE 610

Query: 69  AQQNVNEQC----EKQRKDNSTSV-LDDSALSTTNSIYKNGESVTEETTMENRNSADATK 128
              + + +     EK +K    S+  DD  +  T++  +  +SV+EE    +R     TK
Sbjct: 611 GNDDNSHKDDQPEEKSKKAEEVSLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENSTTK 670

Query: 129 EHDPMVNHGSD--VTNKLKELTEPEVPKDDRTSIVKETENMESKLTTNTVQKLGEETSVE 188
                    S    T+  ++  +   P  D+ S  +  E ++     ++  K   +++V 
Sbjct: 671 LDAVQEKRSSKPVTTDNSEKPVDIICPSQDKCSGKELQEPLKDGNKLSSENKDASQSTVS 730

Query: 189 KPSQSTL---LSKDIHMSDLRNAEK 204
           + +        S+D+ M D   +EK
Sbjct: 731 QSAADASQPEASRDVEMKDTLQSEK 754

The following BLAST results are available for this feature:

BLAST of CmoCh11G011310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY05	1.9e-06	29.47	SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana OX=3702 GN=SWI3D PE=1 SV=3	[more]

BLAST of CmoCh11G011310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETV7	5.0e-151	100.00	SWI/SNF complex subunit SWI3D-like OS=Cucurbita moschata OX=3662 GN=LOC111437510...	[more]
A0A6J1I5J3	6.5e-127	72.92	SWI/SNF complex subunit SWI3D-like OS=Cucurbita maxima OX=3661 GN=LOC111469426 P...	[more]
A0A6J1C5U7	8.9e-100	72.48	SWI/SNF complex subunit SWI3D OS=Momordica charantia OX=3673 GN=LOC111007653 PE=...	[more]
A0A6J1GJX9	8.6e-95	69.59	SWI/SNF complex subunit SWI3D-like isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1GK40	8.6e-95	69.59	SWI/SNF complex subunit SWI3D-like isoform X2 OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CmoCh11G011310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931284.1	1.0e-150	100.00	SWI/SNF complex subunit SWI3D-like [Cucurbita moschata]	[more]
KAG7022293.1	1.6e-148	98.31	SWI/SNF complex subunit SWI3D, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]
KAG6588443.1	5.1e-142	94.92	SWI/SNF complex subunit SWI3D, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023522428.1	6.7e-142	94.92	SWI/SNF complex subunit SWI3D-like [Cucurbita pepo subsp. pepo]	[more]
XP_023529451.1	6.7e-142	94.92	SWI/SNF complex subunit SWI3D-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh11G011310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34430.1	1.3e-07	29.47	DNA-binding family protein	[more]
AT4G34430.4	1.3e-07	29.47	DNA-binding family protein	[more]
AT4G34430.2	1.3e-07	29.47	DNA-binding family protein	[more]
AT4G34430.3	2.3e-07	29.27	DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 264..286
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..223
None	No IPR available	PANTHER	PTHR12802	SWI/SNF COMPLEX-RELATED	coord: 9..170
None	No IPR available	PANTHER	PTHR12802:SF39	SWI/SNF COMPLEX SUBUNIT SWI3D	coord: 9..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G011310.1	CmoCh11G011310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008270	zinc ion binding