CmoCh11G011300 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G011300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	SWI/SNF complex subunit SWI3D-like
Location	Cmo_Chr11: 6371680 .. 6372949 (-)
RNA-Seq Expression	CmoCh11G011300
Synteny	CmoCh11G011300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGGAATTAACGGGTATCTGTCATTGATATGCGAGGAAATAAGATTGCTAGGTATAAAAGATTATTGTGTTTAGTTGTGCACGATAACTTTGGAATTTACAAGTACAAATTATGTTTATGTTTATTTTTTGGAATTTACATGTACGAATTATGTTTATATTTATTTTATGGAACTATTGGAGATAACCTTATATATAATTTAATAGATTAATTAATTAAAAATATATATATATATTCAAAATATCACTAAAAACTAATATTTTTTAGACCCAAAATTAATTTATTAAAAATAATAAATCCTTTTAATTGGATAATTGAATATGATTTTAGCAGATAAGTTCATTAATTGATATATTTTTATCGACAAAATTAATTGAATAAATAGATGATTATTATTAATTTTAATTTTAATTGATTACTTATGATACATTCATAATGAATGAAGTAATAAAAATTAGTCAAAGACAGTTAGTTGATTATAAATAATCGATTAATTAGTTATGGTAAACCAAAATCAATTAATTAATTAACTATATATTCAAAGTAAAATTACAAATAACTATATTCAAAATAAAATTGAATAACACGAGCAGATCATGGATCTTCTTTCATTTGCTAGGATCGGCCAGAAGTTCTCTGAGGTTTTAGTTCTCTGAGGTTTTAAAATGTGTTGTTCTTTTAGGTTTATATACTGACTGCCTGTGTTATTTATGGTACCTGTTTATTTGTTCATAACAGATGATAATCAAAGCAAGAACAATGAAGAAGAAAATTCCAAATGTACAAGTAAGAAAGAGGAAAAAATCGATAAGCTGAAGCGTGCTGCAGTTACGACGCTTGCAGCAGCAGCTGTGAAGGCAAAAGTTCTGGCTAATCAGGAAGAGGATCAAATTCGTCAACTTGCCATGATATTAATCGAGAAACAGGTATCTCGATCAAAGTTGGTTTCGATCGATTTTGATTACATATTAATGAAATTATTACCCCTTCTTTGGGCAGCTGCATAAGTTGGAAAGCAAGTTAGCATACTTCAACGATATGGACAATGTGTCGATGAGAATCAGAGAGCAACTGGACAGGTCAAAGCAAAGGCTTTTCCAGGAACGTGCGCAGATAATTGCTGCTCGACTCGGCGTACCTGCTTCAGCATCACGAGGTGTGGCACCACCAGGAAACAGAATGGCTATGAACTTCCCAAACTCAGTTCCAAGGCCTCCAATGGGCATGGCGCCCCAAAGGCCACCGACTTCTGGACCACGGGTATAG

mRNA sequence

ATGCTTGGAATTAACGGGTATCTGTCATTGATATGCGAGGAAATAAGATTGCTAGATGATAATCAAAGCAAGAACAATGAAGAAGAAAATTCCAAATGTACAAGTAAGAAAGAGGAAAAAATCGATAAGCTGAAGCGTGCTGCAGTTACGACGCTTGCAGCAGCAGCTGTGAAGGCAAAAGTTCTGGCTAATCAGGAAGAGGATCAAATTCGTCAACTTGCCATGATATTAATCGAGAAACAGCTGCATAAGTTGGAAAGCAAGTTAGCATACTTCAACGATATGGACAATGTGTCGATGAGAATCAGAGAGCAACTGGACAGGTCAAAGCAAAGGCTTTTCCAGGAACGTGCGCAGATAATTGCTGCTCGACTCGGCGTACCTGCTTCAGCATCACGAGGTGTGGCACCACCAGGAAACAGAATGGCTATGAACTTCCCAAACTCAGTTCCAAGGCCTCCAATGGGCATGGCGCCCCAAAGGCCACCGACTTCTGGACCACGGGTATAG

Coding sequence (CDS)

ATGCTTGGAATTAACGGGTATCTGTCATTGATATGCGAGGAAATAAGATTGCTAGATGATAATCAAAGCAAGAACAATGAAGAAGAAAATTCCAAATGTACAAGTAAGAAAGAGGAAAAAATCGATAAGCTGAAGCGTGCTGCAGTTACGACGCTTGCAGCAGCAGCTGTGAAGGCAAAAGTTCTGGCTAATCAGGAAGAGGATCAAATTCGTCAACTTGCCATGATATTAATCGAGAAACAGCTGCATAAGTTGGAAAGCAAGTTAGCATACTTCAACGATATGGACAATGTGTCGATGAGAATCAGAGAGCAACTGGACAGGTCAAAGCAAAGGCTTTTCCAGGAACGTGCGCAGATAATTGCTGCTCGACTCGGCGTACCTGCTTCAGCATCACGAGGTGTGGCACCACCAGGAAACAGAATGGCTATGAACTTCCCAAACTCAGTTCCAAGGCCTCCAATGGGCATGGCGCCCCAAAGGCCACCGACTTCTGGACCACGGGTATAG

Protein sequence

MLGINGYLSLICEEIRLLDDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPPGNRMAMNFPNSVPRPPMGMAPQRPPTSGPRV

Homology

[Close]

BLAST of CmoCh11G011300 vs. ExPASy Swiss-Prot
Match: Q8VY05 (SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana OX=3702 GN=SWI3D PE=1 SV=3)

HSP 1 Score: 146.4 bits (368), Expect = 3.0e-34
Identity = 87/148 (58.78%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 21  NQSKNNEEENSKCTSKKEE-KIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIE 80
           N +   ++E   C   K++  I+KLKRAA++ ++AAAVKAK LA QEEDQIRQL+  LIE
Sbjct: 807 NPNIEGKKEKDICEGTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIE 866

Query: 81  KQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPPG 140
           KQLHKLE+KL+ FN+ ++++MR+REQL+RS+QRL+ ERAQIIAARLGVP S S   + P 
Sbjct: 867 KQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQIIAARLGVPPSMSSKASLPT 926

Query: 141 NRMAMNFPNSVPRPPMGMAPQRPPTSGP 168
           NR+A NF N   RPPMGMA  RPP   P
Sbjct: 927 NRIAANFANVAQRPPMGMAFPRPPMPRP 954

[Close]

BLAST of CmoCh11G011300 vs. ExPASy Swiss-Prot
Match: Q53KK6 (SWI/SNF complex subunit SWI3C homolog OS=Oryza sativa subsp. japonica OX=39947 GN=SWI3C PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.2e-10
Identity = 46/127 (36.22%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 42  DKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLHKLESKLAYFNDMDNVSMR 101
           +K+K AA+  L+AAA KAK+ A+QEE +I++L   +I  QL +LE KL  F +++ + ++
Sbjct: 584 EKVKHAAMCGLSAAATKAKLFADQEEREIQRLTATVINHQLKRLELKLKQFAEVETLLLK 643

Query: 102 IREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPPGNRMAMNF-PNSVPRPPMGMAPQ 161
             EQ++R +QR+  +R +I++ RL  P ++     P G+   M+  P S+   PMG+   
Sbjct: 644 ECEQVERIRQRIASDRVRIVSTRLASPGNS----LPGGSTSTMSSNPMSMSPRPMGVPGS 703

Query: 162 RPPTSGP 168
            P +S P
Sbjct: 704 MPQSSMP 706

[Close]

BLAST of CmoCh11G011300 vs. ExPASy Swiss-Prot
Match: Q9XI07 (SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana OX=3702 GN=SWI3C PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07
Identity = 43/134 (32.09%), Postives = 79/134 (58.96%), Query Frame = 0


Query: 13  EEIRLLD-DNQSKNNEEENSKCTSKKEE---KIDKLKRAAVTTLAAAAVKAKVLANQEED 72
           +E  LLD +NQ ++   + S     + +     DK+  A    L+AAA KAK+ A+ EE 
Sbjct: 544 KEASLLDGENQQQDGAHKTSSQNGAEAQTPLPQDKVMAAFRAGLSAAATKAKLFADHEER 603

Query: 73  QIRQLAMILIEKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVP 132
           +I++L+  ++  QL ++E KL  F +++ + M+  EQ+++++QR   ERA++++AR G P
Sbjct: 604 EIQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFSAERARMLSARFGSP 663

Query: 133 ASASRGVAPPGNRM 143
                G++P  N +
Sbjct: 664 G----GISPQTNNL 673

[Close]

BLAST of CmoCh11G011300 vs. ExPASy Swiss-Prot
Match: Q8W475 (SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana OX=3702 GN=SWI3A PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.1e-07
Identity = 42/140 (30.00%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 8   LSLICEEI----RLLDDNQSKN------NEEENSKCTSKKEEKID--------KLKRAAV 67
           L+ +C+E      + D +   N      N E+++    ++EEK          +++ +  
Sbjct: 363 LAALCDEASCPKEIFDTDDYSNFTVDRANGEKDTDMEEQQEEKDGPQGLPVALRIRASVA 422

Query: 68  TTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLHKLESKLAYFNDMDNVSMRIREQLDRS 127
           T L AAA +AK+LA+QEE ++ QLA  +IE+QL KL+SKL + +D++++     + ++  
Sbjct: 423 TALGAAAAQAKILADQEEREMEQLAATVIEQQLKKLQSKLKFLDDLESIMDEEEKVIEGV 482

[Close]

BLAST of CmoCh11G011300 vs. ExPASy Swiss-Prot
Match: Q8TAQ2 (SWI/SNF complex subunit SMARCC2 OS=Homo sapiens OX=9606 GN=SMARCC2 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-06
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 28  EENSKCTSKKEEKIDK--LKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLHKL 87
           E   +  +K E  I +  L  AA   LAAAAVKAK LA  EE +I+ L  +L+E Q+ KL
Sbjct: 840 ESEGERKTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKL 899

Query: 88  ESKLAYFNDMDNVSMRIREQLDRSKQRLFQER 118
           E KL +F +++ +  R RE L+  +Q+L  +R
Sbjct: 900 EIKLRHFEELETIMDREREALEYQRQQLLADR 931

[Close]

BLAST of CmoCh11G011300 vs. ExPASy TrEMBL
Match: A0A6J1ETV7 (SWI/SNF complex subunit SWI3D-like OS=Cucurbita moschata OX=3662 GN=LOC111437510 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.2e-71
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 19  DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 78
           DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI
Sbjct: 838 DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 897

Query: 79  EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP 138
           EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP
Sbjct: 898 EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP 957

Query: 139 GNRMAMNFPNSVPRPPMGMAPQRPPTSGPRV 170
           GNRMAMNFPNSVPRPPMGMAPQRPPTSGPRV
Sbjct: 958 GNRMAMNFPNSVPRPPMGMAPQRPPTSGPRV 988

[Close]

BLAST of CmoCh11G011300 vs. ExPASy TrEMBL
Match: A0A6J1I5J3 (SWI/SNF complex subunit SWI3D-like OS=Cucurbita maxima OX=3661 GN=LOC111469426 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.3e-67
Identity = 145/153 (94.77%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 19   DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 78
            DDNQSKNNEEENSKCTSKKEEK+DKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI
Sbjct: 916  DDNQSKNNEEENSKCTSKKEEKVDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 975

Query: 79   EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAP- 138
            EKQLHKLESKLA+FNDMDNVSMR+REQLDRSKQRLFQERAQIIAARLG+PASASRGVAP 
Sbjct: 976  EKQLHKLESKLAFFNDMDNVSMRVREQLDRSKQRLFQERAQIIAARLGLPASASRGVAPV 1035

Query: 139  -PGNRMAMNFPNSVPRPPMGMAPQRPPTSGPRV 170
             PGNRMA NFPNSVP+PPMGMAPQRPPTSGPRV
Sbjct: 1036 LPGNRMARNFPNSVPKPPMGMAPQRPPTSGPRV 1068

[Close]

BLAST of CmoCh11G011300 vs. ExPASy TrEMBL
Match: A0A1S3BH30 (SWI/SNF complex subunit SWI3D OS=Cucumis melo OX=3656 GN=LOC103489589 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.8e-59
Identity = 131/154 (85.06%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 16  RLLDDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAM 75
           R  DDNQSK+N+EENS  T KKEEKIDKLK AAVT L+AAAVKAK+LANQEEDQIRQLAM
Sbjct: 835 RRADDNQSKDNKEENSNSTGKKEEKIDKLKCAAVTALSAAAVKAKILANQEEDQIRQLAM 894

Query: 76  ILIEKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGV 135
           ILIEKQLHKLESKLA+FN+MDNV+MR+REQLDRSKQRLFQERAQIIAARLG+PAS+SRGV
Sbjct: 895 ILIEKQLHKLESKLAFFNEMDNVTMRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGV 954

Query: 136 AP--PGNRMAMNFPNSVPRPPMGMAPQRPPTSGP 168
           AP  P NRMA NFPNS PRPPMGM PQRPPTSGP
Sbjct: 955 APTLPANRMATNFPNSAPRPPMGMTPQRPPTSGP 988

[Close]

BLAST of CmoCh11G011300 vs. ExPASy TrEMBL
Match: A0A5D3DFZ6 (SWI/SNF complex subunit SWI3D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00480 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.1e-58
Identity = 130/154 (84.42%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 16  RLLDDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAM 75
           R  +DNQSK+N+EENS  T KKEEKIDKLK AAVT L+AAAVKAK+LANQEEDQIRQLAM
Sbjct: 10  RTRNDNQSKDNKEENSNSTGKKEEKIDKLKCAAVTALSAAAVKAKILANQEEDQIRQLAM 69

Query: 76  ILIEKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGV 135
           ILIEKQLHKLESKLA+FN+MDNV+MR+REQLDRSKQRLFQERAQIIAARLG+PAS+SRGV
Sbjct: 70  ILIEKQLHKLESKLAFFNEMDNVTMRVREQLDRSKQRLFQERAQIIAARLGLPASSSRGV 129

Query: 136 AP--PGNRMAMNFPNSVPRPPMGMAPQRPPTSGP 168
           AP  P NRMA NFPNS PRPPMGM PQRPPTSGP
Sbjct: 130 APTLPANRMATNFPNSAPRPPMGMTPQRPPTSGP 163

[Close]

BLAST of CmoCh11G011300 vs. ExPASy TrEMBL
Match: A0A6J1C5U7 (SWI/SNF complex subunit SWI3D OS=Momordica charantia OX=3673 GN=LOC111007653 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 4.0e-58
Identity = 129/150 (86.00%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 20  DNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIE 79
           DNQSK+N+EE S CTSKKE+KIDKLKRAAVTTL+AAAVKAKVLANQEEDQIRQLAMILIE
Sbjct: 842 DNQSKDNKEEKSSCTSKKEDKIDKLKRAAVTTLSAAAVKAKVLANQEEDQIRQLAMILIE 901

Query: 80  KQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAP-- 139
           KQLHKLESKLA+FN+MDNV+MR+REQLDRSKQRLFQERAQIIAARLG+PA++SR +AP  
Sbjct: 902 KQLHKLESKLAFFNEMDNVTMRVREQLDRSKQRLFQERAQIIAARLGLPATSSRVMAPSL 961

Query: 140 PGNRMAMNFPNSVPRPPMGMAPQRPPTSGP 168
           P NRMAMNF NSVPRPPMGM  QRPPTSGP
Sbjct: 962 PANRMAMNFANSVPRPPMGMTSQRPPTSGP 991

[Close]

BLAST of CmoCh11G011300 vs. NCBI nr
Match: XP_022931284.1 (SWI/SNF complex subunit SWI3D-like [Cucurbita moschata])

HSP 1 Score: 277.7 bits (709), Expect = 6.6e-71
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 19  DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 78
           DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI
Sbjct: 838 DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 897

Query: 79  EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP 138
           EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP
Sbjct: 898 EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP 957

Query: 139 GNRMAMNFPNSVPRPPMGMAPQRPPTSGPRV 170
           GNRMAMNFPNSVPRPPMGMAPQRPPTSGPRV
Sbjct: 958 GNRMAMNFPNSVPRPPMGMAPQRPPTSGPRV 988

[Close]

BLAST of CmoCh11G011300 vs. NCBI nr
Match: KAG7022293.1 (SWI/SNF complex subunit SWI3D, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.8 bits (704), Expect = 2.5e-70
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 19  DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 78
           DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI
Sbjct: 838 DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 897

Query: 79  EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP 138
           EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP
Sbjct: 898 EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP 957

Query: 139 GNRMAMNFPNSVPRPPMGMAPQRPPTSGPR 169
           GNRMAMNFPNSVPRPPMGMAPQRPPTSGPR
Sbjct: 958 GNRMAMNFPNSVPRPPMGMAPQRPPTSGPR 987

[Close]

BLAST of CmoCh11G011300 vs. NCBI nr
Match: XP_023522428.1 (SWI/SNF complex subunit SWI3D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.8 bits (704), Expect = 2.5e-70
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 19  DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 78
           DDNQSKNNEEENSKCTSK EEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI
Sbjct: 837 DDNQSKNNEEENSKCTSKNEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 896

Query: 79  EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP 138
           EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP
Sbjct: 897 EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP 956

Query: 139 GNRMAMNFPNSVPRPPMGMAPQRPPTSGPRV 170
           GNRMAMNFPNSVPRPPMGMAPQRPPTSGPRV
Sbjct: 957 GNRMAMNFPNSVPRPPMGMAPQRPPTSGPRV 987

[Close]

BLAST of CmoCh11G011300 vs. NCBI nr
Match: XP_023529451.1 (SWI/SNF complex subunit SWI3D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272.3 bits (695), Expect = 2.8e-69
Identity = 149/151 (98.68%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 19  DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 78
           DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI
Sbjct: 838 DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 897

Query: 79  EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP 138
           EKQLHKLE KLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP
Sbjct: 898 EKQLHKLERKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP 957

Query: 139 GNRMAMNFPNSVPRPPMGMAPQRPPTSGPRV 170
           GNRMAMNFP SVPRPPMGMAPQRPPTSGPRV
Sbjct: 958 GNRMAMNFPISVPRPPMGMAPQRPPTSGPRV 988

[Close]

BLAST of CmoCh11G011300 vs. NCBI nr
Match: KAG6588443.1 (SWI/SNF complex subunit SWI3D, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 269.2 bits (687), Expect = 2.3e-68
Identity = 149/153 (97.39%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 19  DDNQSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 78
           DDNQSKNNEEENSKCT KKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI
Sbjct: 838 DDNQSKNNEEENSKCTRKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILI 897

Query: 79  EKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP 138
           EKQLHKLESKLAYFND+DNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP
Sbjct: 898 EKQLHKLESKLAYFNDIDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP 957

Query: 139 GNRMAMNFPNSVPRPP--MGMAPQRPPTSGPRV 170
           GNRMAMNFPNSVPRPP  MGMAPQRPPTSGPRV
Sbjct: 958 GNRMAMNFPNSVPRPPMGMGMAPQRPPTSGPRV 990

[Close]

BLAST of CmoCh11G011300 vs. TAIR 10
Match: AT4G34430.1 (DNA-binding family protein )

HSP 1 Score: 146.4 bits (368), Expect = 2.1e-35
Identity = 87/148 (58.78%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 21  NQSKNNEEENSKCTSKKEE-KIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIE 80
           N +   ++E   C   K++  I+KLKRAA++ ++AAAVKAK LA QEEDQIRQL+  LIE
Sbjct: 807 NPNIEGKKEKDICEGTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIE 866

Query: 81  KQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPPG 140
           KQLHKLE+KL+ FN+ ++++MR+REQL+RS+QRL+ ERAQIIAARLGVP S S   + P 
Sbjct: 867 KQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQIIAARLGVPPSMSSKASLPT 926

Query: 141 NRMAMNFPNSVPRPPMGMAPQRPPTSGP 168
           NR+A NF N   RPPMGMA  RPP   P
Sbjct: 927 NRIAANFANVAQRPPMGMAFPRPPMPRP 954

[Close]

BLAST of CmoCh11G011300 vs. TAIR 10
Match: AT4G34430.3 (DNA-binding family protein )

HSP 1 Score: 146.4 bits (368), Expect = 2.1e-35
Identity = 87/148 (58.78%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 21  NQSKNNEEENSKCTSKKEE-KIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIE 80
           N +   ++E   C   K++  I+KLKRAA++ ++AAAVKAK LA QEEDQIRQL+  LIE
Sbjct: 805 NPNIEGKKEKDICEGTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIE 864

Query: 81  KQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPPG 140
           KQLHKLE+KL+ FN+ ++++MR+REQL+RS+QRL+ ERAQIIAARLGVP S S   + P 
Sbjct: 865 KQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQIIAARLGVPPSMSSKASLPT 924

Query: 141 NRMAMNFPNSVPRPPMGMAPQRPPTSGP 168
           NR+A NF N   RPPMGMA  RPP   P
Sbjct: 925 NRIAANFANVAQRPPMGMAFPRPPMPRP 952

[Close]

BLAST of CmoCh11G011300 vs. TAIR 10
Match: AT4G34430.2 (DNA-binding family protein )

HSP 1 Score: 146.4 bits (368), Expect = 2.1e-35
Identity = 87/148 (58.78%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 21  NQSKNNEEENSKCTSKKEE-KIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIE 80
           N +   ++E   C   K++  I+KLKRAA++ ++AAAVKAK LA QEEDQIRQL+  LIE
Sbjct: 807 NPNIEGKKEKDICEGTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIE 866

Query: 81  KQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPPG 140
           KQLHKLE+KL+ FN+ ++++MR+REQL+RS+QRL+ ERAQIIAARLGVP S S   + P 
Sbjct: 867 KQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQIIAARLGVPPSMSSKASLPT 926

Query: 141 NRMAMNFPNSVPRPPMGMAPQRPPTSGP 168
           NR+A NF N   RPPMGMA  RPP   P
Sbjct: 927 NRIAANFANVAQRPPMGMAFPRPPMPRP 954

[Close]

BLAST of CmoCh11G011300 vs. TAIR 10
Match: AT4G34430.4 (DNA-binding family protein )

HSP 1 Score: 141.7 bits (356), Expect = 5.3e-34
Identity = 87/149 (58.39%), Postives = 111/149 (74.50%), Query Frame = 0


Query: 21  NQSKNNEEENSKCTSKKEE-KIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIE 80
           N +   ++E   C   K++  I+KLKRAA++ ++AAAVKAK LA QEEDQIRQL+  LIE
Sbjct: 807 NPNIEGKKEKDICEGTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIE 866

Query: 81  K-QLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPP 140
           K QLHKLE+KL+ FN+ ++++MR+REQL+RS+QRL+ ERAQIIAARLGVP S S   + P
Sbjct: 867 KQQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQIIAARLGVPPSMSSKASLP 926

Query: 141 GNRMAMNFPNSVPRPPMGMAPQRPPTSGP 168
            NR+A NF N   RPPMGMA  RPP   P
Sbjct: 927 TNRIAANFANVAQRPPMGMAFPRPPMPRP 955

[Close]

BLAST of CmoCh11G011300 vs. TAIR 10
Match: AT1G21700.1 (SWITCH/sucrose nonfermenting 3C )

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-08
Identity = 43/134 (32.09%), Postives = 79/134 (58.96%), Query Frame = 0


Query: 13  EEIRLLD-DNQSKNNEEENSKCTSKKEE---KIDKLKRAAVTTLAAAAVKAKVLANQEED 72
           +E  LLD +NQ ++   + S     + +     DK+  A    L+AAA KAK+ A+ EE 
Sbjct: 544 KEASLLDGENQQQDGAHKTSSQNGAEAQTPLPQDKVMAAFRAGLSAAATKAKLFADHEER 603

Query: 73  QIRQLAMILIEKQLHKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVP 132
           +I++L+  ++  QL ++E KL  F +++ + M+  EQ+++++QR   ERA++++AR G P
Sbjct: 604 EIQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFSAERARMLSARFGSP 663

Query: 133 ASASRGVAPPGNRM 143
                G++P  N +
Sbjct: 664 G----GISPQTNNL 673

The following BLAST results are available for this feature:

BLAST of CmoCh11G011300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY05	3.0e-34	58.78	SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana OX=3702 GN=SWI3D PE=1 SV=3	[more]
Q53KK6	5.2e-10	36.22	SWI/SNF complex subunit SWI3C homolog OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q9XI07	1.4e-07	32.09	SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana OX=3702 GN=SWI3C PE=1 SV=1	[more]
Q8W475	9.1e-07	30.00	SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana OX=3702 GN=SWI3A PE=1 SV=1	[more]
Q8TAQ2	2.0e-06	41.30	SWI/SNF complex subunit SMARCC2 OS=Homo sapiens OX=9606 GN=SMARCC2 PE=1 SV=1	[more]

BLAST of CmoCh11G011300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETV7	3.2e-71	100.00	SWI/SNF complex subunit SWI3D-like OS=Cucurbita moschata OX=3662 GN=LOC111437510...	[more]
A0A6J1I5J3	1.3e-67	94.77	SWI/SNF complex subunit SWI3D-like OS=Cucurbita maxima OX=3661 GN=LOC111469426 P...	[more]
A0A1S3BH30	2.8e-59	85.06	SWI/SNF complex subunit SWI3D OS=Cucumis melo OX=3656 GN=LOC103489589 PE=4 SV=1	[more]
A0A5D3DFZ6	1.1e-58	84.42	SWI/SNF complex subunit SWI3D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A6J1C5U7	4.0e-58	86.00	SWI/SNF complex subunit SWI3D OS=Momordica charantia OX=3673 GN=LOC111007653 PE=...	[more]

BLAST of CmoCh11G011300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931284.1	6.6e-71	100.00	SWI/SNF complex subunit SWI3D-like [Cucurbita moschata]	[more]
KAG7022293.1	2.5e-70	100.00	SWI/SNF complex subunit SWI3D, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_023522428.1	2.5e-70	99.34	SWI/SNF complex subunit SWI3D-like [Cucurbita pepo subsp. pepo]	[more]
XP_023529451.1	2.8e-69	98.68	SWI/SNF complex subunit SWI3D-like [Cucurbita pepo subsp. pepo]	[more]
KAG6588443.1	2.3e-68	97.39	SWI/SNF complex subunit SWI3D, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh11G011300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34430.1	2.1e-35	58.78	DNA-binding family protein	[more]
AT4G34430.3	2.1e-35	58.78	DNA-binding family protein	[more]
AT4G34430.2	2.1e-35	58.78	DNA-binding family protein	[more]
AT4G34430.4	5.3e-34	58.39	DNA-binding family protein	[more]
AT1G21700.1	1.0e-08	32.09	SWITCH/sucrose nonfermenting 3C	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032451	SMARCC, C-terminal	PFAM	PF16495	SWIRM-assoc_1	coord: 50..130 e-value: 9.1E-25 score: 86.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..169
None	No IPR available	PANTHER	PTHR12802	SWI/SNF COMPLEX-RELATED	coord: 27..164
None	No IPR available	PANTHER	PTHR12802:SF39	SWI/SNF COMPLEX SUBUNIT SWI3D	coord: 27..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G011300.1	CmoCh11G011300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008270	zinc ion binding