CmoCh11G011180 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G011180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein RADIALIS-like 3
Location	Cmo_Chr11: 6295785 .. 6296519 (+)
RNA-Seq Expression	CmoCh11G011180
Synteny	CmoCh11G011180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGATCACCATCTAAACCAGAACCCCATCTCAAAATTGTTCTTCTCGAATTCTTTTTCCAATGGCTTCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTCGAGATGGCATTGGCTTTGTACGACAAAGAAACGCCTGAGAGATGGCAGAATGTTGCCAAGGCCGTCAGCGGGAAGTCGGCCGAGGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTATTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTAGTGATGAAGATGATCAAAGATATGAAATATGGTTTATAATTTTTGTGTTCTATATCAATGAGGGAATAAAAGGTTGTGATTTGCTTTTGCTATTGCTAGGTTGCTCAAGTCGCTTAAGTTTCAATGAAGTTGGCTCAAATGGCTGCGTGGATTCATACCTATTTTACTCTACAACTTTATCTTTTAAAGCCTTTTATGTACAATTAACGATTTGCTTCATTATCATTTGTTAATTATATATTACCCTTTCTTCAATACCGAAAGATTCTATTGACATGATGACTCTGATATCATATTCGGAATTACGGGCATCATCATCGGTATGATATTGTGTACTTAGATTTTGTGAGATAGTGTTACTTACTTGTAAACTCATATTCTTCCTCTTAATTAATTAACCAAAGTGGG

mRNA sequence

TTGATCACCATCTAAACCAGAACCCCATCTCAAAATTGTTCTTCTCGAATTCTTTTTCCAATGGCTTCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTCGAGATGGCATTGGCTTTGTACGACAAAGAAACGCCTGAGAGATGGCAGAATGTTGCCAAGGCCGTCAGCGGGAAGTCGGCCGAGGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTATTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTGCTCAAGTCGCTTAAGTTTCAATGAAGTTGGCTCAAATGGCTGCGTGGATTCATACCTATTTTACTCTACAACTTTATCTTTTAAAGCCTTTTATGTACAATTAACGATTTGCTTCATTATCATTTGTTAATTATATATTACCCTTTCTTCAATACCGAAAGATTCTATTGACATGATGACTCTGATATCATATTCGGAATTACGGGCATCATCATCGGTATGATATTGTGTACTTAGATTTTGTGAGATAGTGTTACTTACTTGTAAACTCATATTCTTCCTCTTAATTAATTAACCAAAGTGGG

Coding sequence (CDS)

ATGGCTTCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTCGAGATGGCATTGGCTTTGTACGACAAAGAAACGCCTGAGAGATGGCAGAATGTTGCCAAGGCCGTCAGCGGGAAGTCGGCCGAGGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTATTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTGCTCAAGTCGCTTAAGTTTCAATGA

Protein sequence

MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ

Homology

[Close]

BLAST of CmoCh11G011180 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.4e-25
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 1   MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
           MASSS+      + WT+KQNK+FE ALA+YDK+TP+RWQNVAKAV  KSAEEV+RHY+IL
Sbjct: 1   MASSSMS---SSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLQRIESGCVPIPNY-------RAAGNGDEELRLLKSLKFQ 97
           +EDL  IE   VP+P Y       ++ G  D +LRL+K+++ Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of CmoCh11G011180 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.7e-23
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 1   MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
           MASSS+   +    WT KQNK FE ALA YD++TP RWQNVAK V GK+ EEV+RHYE+L
Sbjct: 1   MASSSMSS-QSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLQRIESGCVPIPNYRAAG---NG--DEELRLLKSLKFQ 97
           ++D+  IE+G VP PNYR +G   NG   +E + +++++ Q
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of CmoCh11G011180 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-22
Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MAS+S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ EEV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNYR-----AAGNGDEELRLLKSLK 95
          +EDL  IE+G VP+PNY+     +    D + R +K+LK
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLK 96

[Close]

BLAST of CmoCh11G011180 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.3e-22
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MAS+S+      A WT K+NKLFE ALA YD++TP+RW NVA+AV GKSAEEV RHYE+L
Sbjct: 1  MASNSMS---SSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGN 83
          + D+  IESG  P PNYR+ GN
Sbjct: 61 IRDVNDIESGRYPHPNYRSNGN 79

[Close]

BLAST of CmoCh11G011180 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.7e-21
Identity = 46/83 (55.42%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 15 WTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEILLEDLQRIESGCVPI 74
          W+ K+NK FE ALA+YDK+TP+RW NVA+AV G++ EEV++HYEIL+ED++ IESG VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 75 PNYR-AAGNGDEELRLLKSLKFQ 97
          PNYR   GN   + +  ++LK +
Sbjct: 71 PNYRTTGGNMKTDEKRFRNLKIR 93

[Close]

BLAST of CmoCh11G011180 vs. ExPASy TrEMBL
Match: A0A6J1F4Y7 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111440915 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.1e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ 97
          LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ 96

[Close]

BLAST of CmoCh11G011180 vs. ExPASy TrEMBL
Match: A0A6J1I772 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111470234 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.0e-46
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSA+EVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ 97
          LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ 96

[Close]

BLAST of CmoCh11G011180 vs. ExPASy TrEMBL
Match: A0A6J1ICR6 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.2e-35
Identity = 79/96 (82.29%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MASSSLK  RPEA WT KQNKLFE ALALYDKE PERW N+A AV GKSA+EV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ 97
          LEDLQRIESG VPIPNYR A NGDEELRLLK LK Q
Sbjct: 61 LEDLQRIESGRVPIPNYRGAHNGDEELRLLKYLKLQ 96

[Close]

BLAST of CmoCh11G011180 vs. ExPASy TrEMBL
Match: A0A6J1GKW1 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.7e-35
Identity = 78/96 (81.25%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MASSSLK  RPEA WT KQNKLFE ALALYDKETPERW N+A AV GKSA+EV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ 97
          LEDL RIESG VPIPNYR   NGDEELRLLK LK Q
Sbjct: 61 LEDLLRIESGRVPIPNYRGVHNGDEELRLLKYLKLQ 96

[Close]

BLAST of CmoCh11G011180 vs. ExPASy TrEMBL
Match: A0A6J1C2H2 (protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111007854 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.0e-34
Identity = 79/100 (79.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 1   MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
           MASSSLK  RPEA WT KQNKLFE ALALYDKETPERWQN+A AV GKSA+EV+RHY+IL
Sbjct: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60

Query: 61  LEDLQRIESGCVPIPNYR----AAGNGDEELRLLKSLKFQ 97
           LEDL+RIESG VPIPNYR    AAGN DEELRLLK LK +
Sbjct: 61  LEDLRRIESGRVPIPNYRASAXAAGNADEELRLLKYLKLR 100

[Close]

BLAST of CmoCh11G011180 vs. NCBI nr
Match: XP_022933513.1 (protein RADIALIS-like 3 [Cucurbita moschata])

HSP 1 Score: 195.7 bits (496), Expect = 1.9e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ 97
          LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ 96

[Close]

BLAST of CmoCh11G011180 vs. NCBI nr
Match: XP_022971553.1 (protein RADIALIS-like 3 [Cucurbita maxima])

HSP 1 Score: 194.5 bits (493), Expect = 4.2e-46
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSA+EVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ 97
          LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ 96

[Close]

BLAST of CmoCh11G011180 vs. NCBI nr
Match: XP_023531644.1 (protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192.2 bits (487), Expect = 2.1e-45
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MASSSLKHLRPEAMWT KQNKLFEMALALYDKETPERWQNVAKA+SGKSA+EVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTAKQNKLFEMALALYDKETPERWQNVAKAISGKSADEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ 97
          LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSLKFQ 96

[Close]

BLAST of CmoCh11G011180 vs. NCBI nr
Match: KAG7022282.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.6 bits (462), Expect = 1.6e-42
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSA+EVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSL 94
          LEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM 93

[Close]

BLAST of CmoCh11G011180 vs. NCBI nr
Match: KAG6588434.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.6 bits (457), Expect = 6.2e-42
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MA SSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSA+EVERHYEIL
Sbjct: 1  MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSL 94
          LEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM 93

[Close]

BLAST of CmoCh11G011180 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 114.0 bits (284), Expect = 6.7e-26
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 1   MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
           MASSS+      + WT+KQNK+FE ALA+YDK+TP+RWQNVAKAV  KSAEEV+RHY+IL
Sbjct: 1   MASSSMS---SSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLQRIESGCVPIPNY-------RAAGNGDEELRLLKSLKFQ 97
           +EDL  IE   VP+P Y       ++ G  D +LRL+K+++ Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of CmoCh11G011180 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 107.8 bits (268), Expect = 4.8e-24
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 1   MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
           MASSS+   +    WT KQNK FE ALA YD++TP RWQNVAK V GK+ EEV+RHYE+L
Sbjct: 1   MASSSMSS-QSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLQRIESGCVPIPNYRAAG---NG--DEELRLLKSLKFQ 97
           ++D+  IE+G VP PNYR +G   NG   +E + +++++ Q
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of CmoCh11G011180 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 107.1 bits (266), Expect = 8.2e-24
Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MAS+S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ EEV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNYR-----AAGNGDEELRLLKSLK 95
          +EDL  IE+G VP+PNY+     +    D + R +K+LK
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLK 96

[Close]

BLAST of CmoCh11G011180 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 104.4 bits (259), Expect = 5.3e-23
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
          MAS+S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ EEV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNYR 79
          +EDL  IE+G VP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of CmoCh11G011180 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 2.5e-20
Identity = 50/103 (48.54%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 1   MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60
           MAS S+        WT KQNK FE ALA+YD++TP+RW NVA+AV GK+ EE +R Y++L
Sbjct: 1   MASGSMSSY-GSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLL 60

Query: 61  LEDLQRIESGCVPIPNYR-AAGNG------DEELRLLKSLKFQ 97
           + D++ IE+G VP P+Y+   GN       DEE R ++S+K Q
Sbjct: 61  VRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR-MRSMKLQ 101

The following BLAST results are available for this feature:

BLAST of CmoCh11G011180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW75	9.4e-25	55.34	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	6.7e-23	52.48	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q1A173	1.1e-22	54.55	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q6NNN0	3.3e-22	62.20	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q58FS3	3.7e-21	55.42	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of CmoCh11G011180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4Y7	9.1e-47	100.00	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111440915 PE=4 SV=1	[more]
A0A6J1I772	2.0e-46	98.96	protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111470234 PE=4 SV=1	[more]
A0A6J1ICR6	1.2e-35	82.29	protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1	[more]
A0A6J1GKW1	4.7e-35	81.25	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1	[more]
A0A6J1C2H2	1.0e-34	79.00	protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111007854 PE=4 SV=1	[more]

BLAST of CmoCh11G011180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933513.1	1.9e-46	100.00	protein RADIALIS-like 3 [Cucurbita moschata]	[more]
XP_022971553.1	4.2e-46	98.96	protein RADIALIS-like 3 [Cucurbita maxima]	[more]
XP_023531644.1	2.1e-45	96.88	protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]	[more]
KAG7022282.1	1.6e-42	94.62	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6588434.1	6.2e-42	93.55	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh11G011180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19510.1	6.7e-26	55.34	RAD-like 5	[more]
AT4G39250.1	4.8e-24	52.48	RAD-like 1	[more]
AT1G75250.2	8.2e-24	54.55	RAD-like 6	[more]
AT1G75250.1	5.3e-23	62.82	RAD-like 6	[more]
AT2G21650.1	2.5e-20	48.54	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 50..70
None	No IPR available	GENE3D	1.10.10.60		coord: 10..74 e-value: 2.6E-20 score: 74.0
None	No IPR available	PANTHER	PTHR43952:SF29	PROTEIN RADIALIS-LIKE 3	coord: 1..80
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 11..63 e-value: 0.0023 score: 27.2
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 15..61 e-value: 4.25507E-4 score: 33.3178
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..80
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 15..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G011180.1	CmoCh11G011180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003723	RNA binding