CmoCh11G007290 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G007290
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Transposon Ty1-LR2 Gag-Pol polyprotein
Location	Cmo_Chr11: 3532619 .. 3538292 (+)
RNA-Seq Expression	CmoCh11G007290
Synteny	CmoCh11G007290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCACGGGCGCACGCGCGGGAAAGATGGGAATCAAAAGAAGGAGTCGACCAATGGCAGGCCGATCCAATGCTCGAACTGTGGGAAGAGAGGACACCTGAGCAGAAATTGCTGGAGCAAGCTGAGGAATAAGGAGAAGGCCGAAAAGGCCCAGGCCCATGTGGCTCAATCCGAGGAGGACGAGCCAGCTCTCTTCATGGTAACCGCATGCGTCCCCAATTTCGATTCCAAATCCGACGACGATGTTGAACCCAAGAAAGAGCTCCAGTTGGGCGTAGCAAAGCTGGCACCAACTGGGGAGCCAATTCAACTGGAGGAGGAGCGAGTGTTCGCTCAGATCGGCGAAAGGGACGAGCAACACGAGCACCAGCAATGGATCCTTGACACAGGGGCAACAAACCATATGACCGGGGCTAGATCTGCGTTCTCCGAGCTCGACTCGGGGATCCGTGGGACGGTGAAATTCGGCGACGGCTCCGTCGTCGAGATCGAAGGGCGCGGCACCATCCTGTTCGTCAGTAAGGGAGGCGAGCATCGCAAGCTGACCGACGTCTACTTCATCCCGAGGCTCAAGGCTAACCTTGTGAGCCTGGGTCAGCTCGATGAGACAGGCTGCTTCATTTCCATCGAGCGCGGACTACTGAAAATCTGCGATAATCAACGACGGCTGCTCACGCAGGCAAGGCGCACCACAAACCGTCTTTACATCCTGGAGTTAGAGATAGACCAACCCGTTAGCCTCTCGGCCAAGACCGAAGAGGTATCTTGGAGGTGGCACGCAAGGTACGGACACTTAAACTTTCCTGCCCTAGAAAAGCTACAGAAGAAGGAGTTGGTGCACGGCTTGCCAGAAATCAAAGGCGTGAACAAGCTGTGCGACGGGTGCCTCATCGGCAAACAGAGGCGCACACCCTTTCCGTCTCGAACAGCCTACCGAGCCGATGAGCCATTGGAGCTTGTACACGGCGATATTTGCGGGCCCATCAAGCCGGCGACCCCAGGCGGTAAGAGTCTCTTCCTCCTGTTAGTCGATGACAAAAGCCGCTTCATGTGGCTGACTTTGCTGCAAGCGAAAAGTGAGGCGGCAGAGGCGATTAAGCGCATTAAAGCGCGAGCGGAGGCCGAATGTGAGAAGAAGATGCGAGTGCTGCGCACAGACCGAGGCGGAGAATTCACCTCGGCAAGTTTCAATAAGTACTGCGACGAGATCGGCATACAACGGCACCTAACGGCGCCCTACTCCCCCCAACAGAACGGAGTGGTAGAGCGCCGAAATCAGACCATTGTCGGGACAGCGAGGTCATTGTTGGTGACGGCCGGGATGCCTGGGAGATTCTGGGGAGAGGCAGTAATGACGGCTGTTTATCTCCTCAATCGGTCACCAACCCGAAGCCTCGACGGGAAGACGCCATATGAAGCCTGGTACAACAAAAAACCAACAGTACATCATTTTCGCGTGTTCGGCTGCGTCGCATACATGAAGGTAACACGTCCTCATCTCGCCAAGCTCGATCCCGGGGGGCTGAAGGTCGTCTTCATCGGCTACGAACCCGGGAGCAAGGCGTACAGACTCTATGATCCTGTGGGGGGGCGAGCTCACGTGTCTCGCGACGTCGTCTTCGACGAAAGCACCTTCTGGCAGTGGAATGACGTGATCGAGACAGACCGTAATCCAAATCAATTCACGGTGGAGTACCTCGTCACCGAGCCTGAAGAAGGAGGAGCCCAGCATCAGGAGACGTCACCGCCGCCAGCAGGTGCACCACCTGAACCAGTGGAATTCGCAACACCACGGACTGCGGATTCGACGCTGGATGCCGATCACGATACTGATCTGGAGGCTAGGTACCGGAGGATGGATGACCTAGTGGGAGGAGGTGAACCACCTGGACTAGCAGCGCGCGAGCTCGAGGAAGTGGCCGAACTACATGCCGTCAGTGCAGATGAACCAAACACCTTCGCCGAAGCAGAAAAGAACCCGTGCTGGCGGAAGGCAATGCAGGAGGAGATGACATCCATCACTGAGAACCAGACGTGGAGTCTGGAGGATATGCCACCGGGACACCGAGCCATAGGGCTCAAATGGGTCTTCAAACTGAAGCGCAACGAAAAAGGAGAAGTTGTGAAGCACAAGGCTCGTCTGGTGGCGAAGGGCTACGTCCAGAAGCAAGGAGTGGATTTCGAAGAGGTATTTGCGCCAGTAGCAAGGTTAGAATCCGTTCGTTTCCTGCTGGCAATTGCAGCACATCACTCTTGGGAGGTTCACCATATGGACGTAAAGTCTGCTTTCCTTAACGGAGAGTTGAAGGAGACCGTCTATGTTCGACAACCACCTGGCTTCCTGGATAACGACAACCCTAATAAGGTACTGCGCCTGCACAAAGCACTCTACGGGCTTCGACAAGCCCCACGAGCCTGGAACGCGAAGCTCGACAGTACCCTACTGTCACTGAATTTCAAACGTTGTGCCTCTGAGCATGGCATGTACACGTACGGCCACGGCAAAAAGCGACTGATCGTGGGAGTGTACGTCGACGACCTCATAATCACTGGAGGCGACGTGGGAGTCCTCGGAAGGTTCAAGAAGGAGATGTCGAAAAACTTCGAGATGAGCGATCTCGGTGTGCTCAGCTACTACCTCGGCATCGAAGTGCAACAGAACTCTTCCGGCATCTCCATCTGCCAAAGTGCATACGCGAGGAAGCTGCTGGACACAACTGGGCTTGTGGACAGTAATCCTACCAGGACGCCAATGGAGGCCCGACTTCAACTAAGGAAGGCCGGCACTACGACGACAGTCGACTCCACCAATTACCGCAGCATTGTCGGGAGTCTGCGCTATCTGGTAAACTCTCGTCCTGATCTTGCTTATTCTGTTGGATATGTGAGCAGGTTTATGGAAGCACCTAGGGAGGAGCATCTAGTGGCTGTCAAGCGCATCCTGCGCTATGTAGCCGGAACCAGAGGCTGGGGCGTAAGATACTGCGCTGGGAGCGAAAAGGAGAAACTCAAACTGGTCGGCTACAGCGATAGTGACATGGCCGGTGACGTTGATGATCGTAAGAGCACCAGCGGAATGATCTACTTTCTCTCAGGCGGCGCGATCTGCTGGCAATCAACAAAACAGAAGGTAGTTGCTTTGTCTTCCTGCGAAGCAGAATACATCGCCGCTTCGATGGCAGCAACTCAAGGGATCTGGCTTGCACGACTAATGGAAGAACTCATCGGGAGAGAAAGCGATTCACCAATGCTATACATAGACAACAAAGCTACGATCTCCCTGATCAAAAATCCAGTTTTGCACGACCGGAGCAAGCACATAGAAACCAGATTCCACTACATTCGAGAATGTGCAGATCGAGGGCTCATCAAAATTGATTTCATCCGAACAGAGGAACAACTTGGAGACATTTTCACCAAATCCCTGGCGCGGGTGAAATTTGAAGAACTACGCTCAAAGATCGGAGTTCAAATAATAAGGTACAGCTTTTAGGAGGAGATTGTTAAATAAAAGCTCTGCCTTATTTAGTTAGGTTTGTCAAAACATATGAGTTCACGCGAATGGAGGAGCGTGATTCTAGGGGCCATTGTTTTGGCAGAGTGGCGGAGTCTTCGTCCACTTATTCTATTTTTGTATATTTAGTTTTTCTATTTTTGTAATTAGATTTATTATTTAAACCATTCAACGGATGTAAAATAAAGATATCGAGTCTTCAGCATTACCAGCGAATCTCTCTCTCTCTCTCCTTTTACTTCCGCTAATTTTTCCTTCGAAGAAACCTTCGGCCAATTTTTTCGTCGACATCCGATTTGCCAGAGTCAACAAGAGTATCCGATGGGGCTGGTGTGGAGGCTGGGCGACAGGCTAGTGTATCCGATGACAAGAGTATCTCCCTGTACGATTACATTTGAAGCAGACAGATGCAGGGAGGCAAGGACAATGAGTAGTTTTCTAGAAAGCAATCGGTGCCACCGCTTCATCCATAGCTGTTGCCCACACTAATATTCGTTCTACTTCTATGTCAAGTTGCTTGTCTTTTTAGTCATGAATCAGCGACATTATTCTGTTGCCAACTTGTTATCAGCGTTCATTTGCTACCTAGATTTGGAATCAAGGGCAATGGACCCCAAATTTTATTACAGGAGAAAGAAGCGCACCAAAACTTTGAAGCCAGACTGAATAATGAAAAGGGCTATAGACATGTTAATACACTAGACTTTAGAACCTTATTTAGGGGACTTCCTTGGGAGATTATGCAATCGGATCCATCAATACGACGGTCGTGCATGAGGCAACTTCGATTAAAAGGGATGCAAACATAGCAATCCTAACGAAAACTTTTCATTTTGAGACCCGTAATACAACCCACTATGAAACACTCTCATTTATAAGTAAGAACAACATGAAAGGGCCTCCTCCCCCGCTGGTATTTTGCCTATATTGTGTTTATCGGGGGACCCTCGATCCGGAAGGTATGCCACGACTACTATCGAGATATACATGTCCTGCCCTATCGTGATGATAAACGGCTCATCTTGTCGTGACCTTCTCTTGAATTCTCAAAACTTTTGTCGCTTCCTCCATCAAAAATCAAATAAATAGAGAAAAGCCGGCTATCGAAATCGAGTGTTCAAAAATTTAAAATCAAAGTTTAGACGGCTAACATCAGTTCAACTAGAGAAGACCAAGAAAAGTGGTTATGGACGGTTAAAATTCAAACCACTAACGGTTGGGTAGATAATTCATATTAGTTAAATTAAATTCAGTTTATTATAACTTACAAGTAGAAATTATTAACAAAGTAAGTGGTTAAATATATAAAAAAAACAAATTTATTACAAAAATAATTGAATTTTAACGTCAGGTAAAACGGCCAATGGTGGCGGCGGTAAAAACCCAAGAAGCTGCGATGGCAATTGACGTAAATAAAAGGAAAAACAAGGGCAAAAACCATAGCCTCCTTGATTAGCTCTCTAATGTCGGGTTTAGAGCATAATAATGACTAATTGAGACACACGGTATACGGAGGCCACGAATGTTGAACTAACCAGCAGCCCTCTCTTCTATACCAACGCCACCATCTCACAAACCCAACAAACAGAATACTCCCCAAAATCAAATTGAACAAAAAAATTTTAACTTTTAGAGAGAGAAATCTTACAGCACAGCCTAGAGAGAGAAACCCCCTTCACACCCAAAGGAATTGCTTCAACCTTTTCGCCTTAGTTTATAAACAAAACAATCTCACCTCAGAACCAGAAGCTTTGGGAAAAAAAAAAAAAGGGTAACCCACATAGAAAAGAAGGAAGAACAACAAAAAAAACTTCGCGGCAGCTTTGTTTTCTTCCTTTCTCTCTGTTTATCGCCTTCTTTTAAGTTCCCAATTCAACCTTCTGTATTTGTTTTGTCGATATTTGGTATTCCATTTCTTACCCTTCAGCTGCTTCAATCCGATCTAGCTTTCCGTGTCTGGTTCCGTTTGTTTCGGATGAGTTTGCGGCGGAGGAAGTTCTTTTGAGGGGATTTTATTGATACCCTTTTGCGAACTCCAGCTCTTGTGGGTTTGTTTTTGGCTATATCAGCTGGTGAAGCTTTGTGGGTACTTGTGCGTTTTGTCCGATCTGGGTCGTCGAGTATTTGGTTCCTTTTGACTCCTTTCTGTCTTGGATGA

mRNA sequence

ATGTCCCACGGGCGCACGCGCGGGAAAGATGGGAATCAAAAGAAGGAGTCGACCAATGGCAGGCCGATCCAATGCTCGAACTGTGGGAAGAGAGGACACCTGAGCAGAAATTGCTGGAGCAAGCTGAGGAATAAGGAGAAGGCCGAAAAGGCCCAGGCCCATGTGGCTCAATCCGAGGAGGACGAGCCAGCTCTCTTCATGGTAACCGCATGCGTCCCCAATTTCGATTCCAAATCCGACGACGATGTTGAACCCAAGAAAGAGCTCCAGTTGGGCGTAGCAAAGCTGGCACCAACTGGGGAGCCAATTCAACTGGAGGAGGAGCGAGTGTTCGCTCAGATCGGCGAAAGGGACGAGCAACACGAGCACCAGCAATGGATCCTTGACACAGGGGCAACAAACCATATGACCGGGGCTAGATCTGCGTTCTCCGAGCTCGACTCGGGGATCCGTGGGACGGTGAAATTCGGCGACGGCTCCGTCGTCGAGATCGAAGGGCGCGGCACCATCCTGTTCGTCAGTAAGGGAGGCGAGCATCGCAAGCTGACCGACGTCTACTTCATCCCGAGGCTCAAGGCTAACCTTGTGAGCCTGGGTCAGCTCGATGAGACAGGCTGCTTCATTTCCATCGAGCGCGGACTACTGAAAATCTGCGATAATCAACGACGGCTGCTCACGCAGGCAAGGCGCACCACAAACCGTCTTTACATCCTGGAGTTAGAGATAGACCAACCCGTTAGCCTCTCGGCCAAGACCGAAGAGGTATCTTGGAGGTGGCACGCAAGGTACGGACACTTAAACTTTCCTGCCCTAGAAAAGCTACAGAAGAAGGAGTTGGTGCACGGCTTGCCAGAAATCAAAGGCGTGAACAAGCTGTGCGACGGGTGCCTCATCGGCAAACAGAGGCGCACACCCTTTCCGTCTCGAACAGCCTACCGAGCCGATGAGCCATTGGAGCTTGTACACGGCGATATTTGCGGGCCCATCAAGCCGGCGACCCCAGGCGGTAAGAGTCTCTTCCTCCTGTTAGTCGATGACAAAAGCCGCTTCATGTGGCTGACTTTGCTGCAAGCGAAAAGTGAGGCGGCAGAGGCGATTAAGCGCATTAAAGCGCGAGCGGAGGCCGAATGTGAGAAGAAGATGCGAGTGCTGCGCACAGACCGAGGCGGAGAATTCACCTCGGCAAGTTTCAATAAGTACTGCGACGAGATCGGCATACAACGGCACCTAACGGCGCCCTACTCCCCCCAACAGAACGGAGTGGTAGAGCGCCGAAATCAGACCATTGTCGGGACAGCGAGGTCATTGTTGGTGACGGCCGGGATGCCTGGGAGATTCTGGGGAGAGGCAGTAATGACGGCTGTTTATCTCCTCAATCGGTCACCAACCCGAAGCCTCGACGGGAAGACGCCATATGAAGCCTGGTACAACAAAAAACCAACAGTACATCATTTTCGCGTGTTCGGCTGCGTCGCATACATGAAGGTAACACGTCCTCATCTCGCCAAGCTCGATCCCGGGGGGCTGAAGGTCGTCTTCATCGGCTACGAACCCGGGAGCAAGGCGTACAGACTCTATGATCCTGTGGGGGGGCGAGCTCACGTGTCTCGCGACGTCGTCTTCGACGAAAGCACCTTCTGGCAGTGGAATGACGTGATCGAGACAGACCGTAATCCAAATCAATTCACGGTGGAGTACCTCGTCACCGAGCCTGAAGAAGGAGGAGCCCAGCATCAGGAGACGTCACCGCCGCCAGCAGGTGCACCACCTGAACCAGTGGAATTCGCAACACCACGGACTGCGGATTCGACGCTGGATGCCGATCACGATACTGATCTGGAGGCTAGGTACCGGAGGATGGATGACCTAGTGGGAGGAGGTGAACCACCTGGACTAGCAGCGCGCGAGCTCGAGGAAGTGGCCGAACTACATGCCGTCAGTGCAGATGAACCAAACACCTTCGCCGAAGCAGAAAAGAACCCGTGCTGGCGGAAGGCAATGCAGGAGGAGATGACATCCATCACTGAGAACCAGACGTGGAGTCTGGAGGATATGCCACCGGGACACCGAGCCATAGGGCTCAAATGGGTCTTCAAACTGAAGCGCAACGAAAAAGGAGAAGTTGTGAAGCACAAGGCTCGTCTGGTGGCGAAGGGCTACGTCCAGAAGCAAGGAGTGGATTTCGAAGAGGTATTTGCGCCAGTAGCAAGGTTAGAATCCGTTCGTTTCCTGCTGGCAATTGCAGCACATCACTCTTGGGAGGTTCACCATATGGACGTAAAGTCTGCTTTCCTTAACGGAGAGTTGAAGGAGACCGTCTATGTTCGACAACCACCTGGCTTCCTGGATAACGACAACCCTAATAAGGTACTGCGCCTGCACAAAGCACTCTACGGGCTTCGACAAGCCCCACGAGCCTGGAACGCGAAGCTCGACAGTACCCTACTGTCACTGAATTTCAAACGTTGTGCCTCTGAGCATGGCATGTACACGTACGGCCACGGCAAAAAGCGACTGATCGTGGGAGTGTACGTCGACGACCTCATAATCACTGGAGGCGACGTGGGAGTCCTCGGAAGGTTCAAGAAGGAGATGTCGAAAAACTTCGAGATGAGCGATCTCGGTGTGCTCAGCTACTACCTCGGCATCGAAGTGCAACAGAACTCTTCCGGCATCTCCATCTGCCAAAGTGCATACGCGAGGAAGCTGCTGGACACAACTGGGCTTGTGGACAGTAATCCTACCAGGACGCCAATGGAGGCCCGACTTCAACTAAGGAAGGCCGGCACTACGACGACAGTCGACTCCACCAATTACCGCAGCATTGTCGGGAGTCTGCGCTATCTGGTAAACTCTCGTCCTGATCTTGCTTATTCTGTTGGATATGTGAGCAGGTTTATGGAAGCACCTAGGGAGGAGCATCTAGTGGCTGTCAAGCGCATCCTGCGCTATGTAGCCGGAACCAGAGGCTGGGGCGTAAGATACTGCGCTGGGAGCGAAAAGGAGAAACTCAAACTGGTCGGCTACAGCGATAGTGACATGGCCGGTGACGTTGATGATCGTAAGAGCACCAGCGGAATGATCTACTTTCTCTCAGGCGGCGCGATCTGCTGGCAATCAACAAAACAGAAGGTAGTTGCTTTGTCTTCCTGCGAAGCAGAATACATCGCCGCTTCGATGGCAGCAACTCAAGGGATCTGGCTTGCACGACTAATGGAAGAACTCATCGGGAGAGAAAGCGATTCACCAATGCTATACATAGACAACAAAGCTACGATCTCCCTGATCAAAAATCCAGTTTTGCACGACCGGAGCAAGCACATAGAAACCAGATTCCACTACATTCGAGAATGTGCAGATCGAGGGCTCATCAAAATTGATTTCATCCGAACAGAGGAACAACTTGGAGACATTTTCACCAAATCCCTGGCGCGGGTGAAATTTGAAGAACTACGCTCAAAGATCGGAGTTCAAATAATAAGCTTTGTTTTCTTCCTTTCTCTCTGTTTATCGCCTTCTTTTAAGTTCCCAATTCAACCTTCTGTATTTGTTTTGTCGATATTTGGTATTCCATTTCTTACCCTTCAGCTGCTTCAATCCGATCTAGCTTTCCGTGTCTGGTTCCCTCTTGTGGGTTTGTTTTTGGCTATATCAGCTGGTGAAGCTTTGTGGGTACTTGTGCGTTTTGTCCGATCTGGGTCGTCGAGTATTTGGTTCCTTTTGACTCCTTTCTGTCTTGGATGA

Coding sequence (CDS)

ATGTCCCACGGGCGCACGCGCGGGAAAGATGGGAATCAAAAGAAGGAGTCGACCAATGGCAGGCCGATCCAATGCTCGAACTGTGGGAAGAGAGGACACCTGAGCAGAAATTGCTGGAGCAAGCTGAGGAATAAGGAGAAGGCCGAAAAGGCCCAGGCCCATGTGGCTCAATCCGAGGAGGACGAGCCAGCTCTCTTCATGGTAACCGCATGCGTCCCCAATTTCGATTCCAAATCCGACGACGATGTTGAACCCAAGAAAGAGCTCCAGTTGGGCGTAGCAAAGCTGGCACCAACTGGGGAGCCAATTCAACTGGAGGAGGAGCGAGTGTTCGCTCAGATCGGCGAAAGGGACGAGCAACACGAGCACCAGCAATGGATCCTTGACACAGGGGCAACAAACCATATGACCGGGGCTAGATCTGCGTTCTCCGAGCTCGACTCGGGGATCCGTGGGACGGTGAAATTCGGCGACGGCTCCGTCGTCGAGATCGAAGGGCGCGGCACCATCCTGTTCGTCAGTAAGGGAGGCGAGCATCGCAAGCTGACCGACGTCTACTTCATCCCGAGGCTCAAGGCTAACCTTGTGAGCCTGGGTCAGCTCGATGAGACAGGCTGCTTCATTTCCATCGAGCGCGGACTACTGAAAATCTGCGATAATCAACGACGGCTGCTCACGCAGGCAAGGCGCACCACAAACCGTCTTTACATCCTGGAGTTAGAGATAGACCAACCCGTTAGCCTCTCGGCCAAGACCGAAGAGGTATCTTGGAGGTGGCACGCAAGGTACGGACACTTAAACTTTCCTGCCCTAGAAAAGCTACAGAAGAAGGAGTTGGTGCACGGCTTGCCAGAAATCAAAGGCGTGAACAAGCTGTGCGACGGGTGCCTCATCGGCAAACAGAGGCGCACACCCTTTCCGTCTCGAACAGCCTACCGAGCCGATGAGCCATTGGAGCTTGTACACGGCGATATTTGCGGGCCCATCAAGCCGGCGACCCCAGGCGGTAAGAGTCTCTTCCTCCTGTTAGTCGATGACAAAAGCCGCTTCATGTGGCTGACTTTGCTGCAAGCGAAAAGTGAGGCGGCAGAGGCGATTAAGCGCATTAAAGCGCGAGCGGAGGCCGAATGTGAGAAGAAGATGCGAGTGCTGCGCACAGACCGAGGCGGAGAATTCACCTCGGCAAGTTTCAATAAGTACTGCGACGAGATCGGCATACAACGGCACCTAACGGCGCCCTACTCCCCCCAACAGAACGGAGTGGTAGAGCGCCGAAATCAGACCATTGTCGGGACAGCGAGGTCATTGTTGGTGACGGCCGGGATGCCTGGGAGATTCTGGGGAGAGGCAGTAATGACGGCTGTTTATCTCCTCAATCGGTCACCAACCCGAAGCCTCGACGGGAAGACGCCATATGAAGCCTGGTACAACAAAAAACCAACAGTACATCATTTTCGCGTGTTCGGCTGCGTCGCATACATGAAGGTAACACGTCCTCATCTCGCCAAGCTCGATCCCGGGGGGCTGAAGGTCGTCTTCATCGGCTACGAACCCGGGAGCAAGGCGTACAGACTCTATGATCCTGTGGGGGGGCGAGCTCACGTGTCTCGCGACGTCGTCTTCGACGAAAGCACCTTCTGGCAGTGGAATGACGTGATCGAGACAGACCGTAATCCAAATCAATTCACGGTGGAGTACCTCGTCACCGAGCCTGAAGAAGGAGGAGCCCAGCATCAGGAGACGTCACCGCCGCCAGCAGGTGCACCACCTGAACCAGTGGAATTCGCAACACCACGGACTGCGGATTCGACGCTGGATGCCGATCACGATACTGATCTGGAGGCTAGGTACCGGAGGATGGATGACCTAGTGGGAGGAGGTGAACCACCTGGACTAGCAGCGCGCGAGCTCGAGGAAGTGGCCGAACTACATGCCGTCAGTGCAGATGAACCAAACACCTTCGCCGAAGCAGAAAAGAACCCGTGCTGGCGGAAGGCAATGCAGGAGGAGATGACATCCATCACTGAGAACCAGACGTGGAGTCTGGAGGATATGCCACCGGGACACCGAGCCATAGGGCTCAAATGGGTCTTCAAACTGAAGCGCAACGAAAAAGGAGAAGTTGTGAAGCACAAGGCTCGTCTGGTGGCGAAGGGCTACGTCCAGAAGCAAGGAGTGGATTTCGAAGAGGTATTTGCGCCAGTAGCAAGGTTAGAATCCGTTCGTTTCCTGCTGGCAATTGCAGCACATCACTCTTGGGAGGTTCACCATATGGACGTAAAGTCTGCTTTCCTTAACGGAGAGTTGAAGGAGACCGTCTATGTTCGACAACCACCTGGCTTCCTGGATAACGACAACCCTAATAAGGTACTGCGCCTGCACAAAGCACTCTACGGGCTTCGACAAGCCCCACGAGCCTGGAACGCGAAGCTCGACAGTACCCTACTGTCACTGAATTTCAAACGTTGTGCCTCTGAGCATGGCATGTACACGTACGGCCACGGCAAAAAGCGACTGATCGTGGGAGTGTACGTCGACGACCTCATAATCACTGGAGGCGACGTGGGAGTCCTCGGAAGGTTCAAGAAGGAGATGTCGAAAAACTTCGAGATGAGCGATCTCGGTGTGCTCAGCTACTACCTCGGCATCGAAGTGCAACAGAACTCTTCCGGCATCTCCATCTGCCAAAGTGCATACGCGAGGAAGCTGCTGGACACAACTGGGCTTGTGGACAGTAATCCTACCAGGACGCCAATGGAGGCCCGACTTCAACTAAGGAAGGCCGGCACTACGACGACAGTCGACTCCACCAATTACCGCAGCATTGTCGGGAGTCTGCGCTATCTGGTAAACTCTCGTCCTGATCTTGCTTATTCTGTTGGATATGTGAGCAGGTTTATGGAAGCACCTAGGGAGGAGCATCTAGTGGCTGTCAAGCGCATCCTGCGCTATGTAGCCGGAACCAGAGGCTGGGGCGTAAGATACTGCGCTGGGAGCGAAAAGGAGAAACTCAAACTGGTCGGCTACAGCGATAGTGACATGGCCGGTGACGTTGATGATCGTAAGAGCACCAGCGGAATGATCTACTTTCTCTCAGGCGGCGCGATCTGCTGGCAATCAACAAAACAGAAGGTAGTTGCTTTGTCTTCCTGCGAAGCAGAATACATCGCCGCTTCGATGGCAGCAACTCAAGGGATCTGGCTTGCACGACTAATGGAAGAACTCATCGGGAGAGAAAGCGATTCACCAATGCTATACATAGACAACAAAGCTACGATCTCCCTGATCAAAAATCCAGTTTTGCACGACCGGAGCAAGCACATAGAAACCAGATTCCACTACATTCGAGAATGTGCAGATCGAGGGCTCATCAAAATTGATTTCATCCGAACAGAGGAACAACTTGGAGACATTTTCACCAAATCCCTGGCGCGGGTGAAATTTGAAGAACTACGCTCAAAGATCGGAGTTCAAATAATAAGCTTTGTTTTCTTCCTTTCTCTCTGTTTATCGCCTTCTTTTAAGTTCCCAATTCAACCTTCTGTATTTGTTTTGTCGATATTTGGTATTCCATTTCTTACCCTTCAGCTGCTTCAATCCGATCTAGCTTTCCGTGTCTGGTTCCCTCTTGTGGGTTTGTTTTTGGCTATATCAGCTGGTGAAGCTTTGTGGGTACTTGTGCGTTTTGTCCGATCTGGGTCGTCGAGTATTTGGTTCCTTTTGACTCCTTTCTGTCTTGGATGA

Protein sequence

MSHGRTRGKDGNQKKESTNGRPIQCSNCGKRGHLSRNCWSKLRNKEKAEKAQAHVAQSEEDEPALFMVTACVPNFDSKSDDDVEPKKELQLGVAKLAPTGEPIQLEEERVFAQIGERDEQHEHQQWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFVSKGGEHRKLTDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILELEIDQPVSLSAKTEEVSWRWHARYGHLNFPALEKLQKKELVHGLPEIKGVNKLCDGCLIGKQRRTPFPSRTAYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAKSEAAEAIKRIKARAEAECEKKMRVLRTDRGGEFTSASFNKYCDEIGIQRHLTAPYSPQQNGVVERRNQTIVGTARSLLVTAGMPGRFWGEAVMTAVYLLNRSPTRSLDGKTPYEAWYNKKPTVHHFRVFGCVAYMKVTRPHLAKLDPGGLKVVFIGYEPGSKAYRLYDPVGGRAHVSRDVVFDESTFWQWNDVIETDRNPNQFTVEYLVTEPEEGGAQHQETSPPPAGAPPEPVEFATPRTADSTLDADHDTDLEARYRRMDDLVGGGEPPGLAARELEEVAELHAVSADEPNTFAEAEKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEEVFAPVARLESVRFLLAIAAHHSWEVHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALYGLRQAPRAWNAKLDSTLLSLNFKRCASEHGMYTYGHGKKRLIVGVYVDDLIITGGDVGVLGRFKKEMSKNFEMSDLGVLSYYLGIEVQQNSSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRYLVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSEKEKLKLVGYSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQKVVALSSCEAEYIAASMAATQGIWLARLMEELIGRESDSPMLYIDNKATISLIKNPVLHDRSKHIETRFHYIRECADRGLIKIDFIRTEEQLGDIFTKSLARVKFEELRSKIGVQIISFVFFLSLCLSPSFKFPIQPSVFVLSIFGIPFLTLQLLQSDLAFRVWFPLVGLFLAISAGEALWVLVRFVRSGSSSIWFLLTPFCLG

Homology

[Close]

BLAST of CmoCh11G007290 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 667.5 bits (1721), Expect = 2.9e-190
Identity = 432/1177 (36.70%), Postives = 633/1177 (53.78%), Query Frame = 0


Query: 2    SHGRT--RGKDGNQKKESTNGRPIQCSNCGKRGHLSRNCWSKLRNKEKAEKAQAHVAQSE 61
            ++GR+  RGK  N+ K     R   C NC + GH  R+C +  + K +         Q  
Sbjct: 211  NYGRSGARGKSKNRSK----SRVRNCYNCNQPGHFKRDCPNPRKGKGETS------GQKN 270

Query: 62   EDEPALFMVTACVPNFDSKSDDDVEPKKELQLGVAKLAPTGEPIQLEEERVFAQIGERDE 121
            +D  A     A V N D+           + L +            EEE      G   E
Sbjct: 271  DDNTA-----AMVQNNDN-----------VVLFIN-----------EEEECMHLSGPESE 330

Query: 122  QHEHQQWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFVSKGGEH 181
                  W++DT A++H T  R  F    +G  GTVK G+ S  +I G G I   +  G  
Sbjct: 331  ------WVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCT 390

Query: 182  RKLTDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILE 241
              L DV  +P L+ NL+S   LD  G          ++      +     R T  LY   
Sbjct: 391  LVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGT--LYRTN 450

Query: 242  LEIDQPVSLSAKTEEVSW-RWHARYGHLNFPALEKLQKKELVHGLPEIKGVN-KLCDGCL 301
             EI Q   L+A  +E+S   WH R GH++   L+ L KK L+      KG   K CD CL
Sbjct: 451  AEICQG-ELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLI---SYAKGTTVKPCDYCL 510

Query: 302  IGKQRRTPFPSRTAYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQ 361
             GKQ R  F + ++ R    L+LV+ D+CGP++  + GG   F+  +DD SR +W+ +L+
Sbjct: 511  FGKQHRVSFQT-SSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILK 570

Query: 362  AKSEAAEAIKRIKARAEAECEKKMRVLRTDRGGEFTSASFNKYCDEIGIQRHLTAPYSPQ 421
             K +  +  ++  A  E E  +K++ LR+D GGE+TS  F +YC   GI+   T P +PQ
Sbjct: 571  TKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQ 630

Query: 422  QNGVVERRNQTIVGTARSLLVTAGMPGRFWGEAVMTAVYLLNRSPTRSLDGKTPYEAWYN 481
             NGV ER N+TIV   RS+L  A +P  FWGEAV TA YL+NRSP+  L  + P   W N
Sbjct: 631  HNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTN 690

Query: 482  KKPTVHHFRVFGCVAYMKVTRPHLAKLDPGGLKVVFIGYEPGSKAYRLYDPVGGRAHVSR 541
            K+ +  H +VFGC A+  V +    KLD   +  +FIGY      YRL+DPV  +   SR
Sbjct: 691  KEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSR 750

Query: 542  DVVFDESTFWQWNDVIETDRN---PNQFTVEYLVTEPEEGGAQHQETSPPPAGAPPEPVE 601
            DVVF ES      D+ E  +N   PN  T+      P    +   E S    G  P  V 
Sbjct: 751  DVVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVS--EQGEQPGEVI 810

Query: 602  FATPRTADSTLDADHDTDLEARYRRMDDLVGGGEPPGLAARELEEVAELHAVSADEPNTF 661
                +  +   + +H T  E +++ +       E P + +R       +      EP + 
Sbjct: 811  EQGEQLDEGVEEVEHPTQGEEQHQPL----RRSERPRVESRRYPSTEYVLISDDREPESL 870

Query: 662  AEA----EKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVK 721
             E     EKN    KAMQEEM S+ +N T+ L ++P G R +  KWVFKLK++   ++V+
Sbjct: 871  KEVLSHPEKNQL-MKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVR 930

Query: 722  HKARLVAKGYVQKQGVDFEEVFAPVARLESVRFLLAIAAHHSWEVHHMDVKSAFLNGELK 781
            +KARLV KG+ QK+G+DF+E+F+PV ++ S+R +L++AA    EV  +DVK+AFL+G+L+
Sbjct: 931  YKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLE 990

Query: 782  ETVYVRQPPGFLDNDNPNKVLRLHKALYGLRQAPRAWNAKLDSTLLSLNFKRCASEHGMY 841
            E +Y+ QP GF      + V +L+K+LYGL+QAPR W  K DS + S  + +  S+  +Y
Sbjct: 991  EEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVY 1050

Query: 842  TYGHGKKR-LIVGVYVDDLIITGGDVGVLGRFKKEMSKNFEMSDLGVLSYYLGIEV--QQ 901
                 +   +I+ +YVDD++I G D G++ + K ++SK+F+M DLG     LG+++  ++
Sbjct: 1051 FKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRER 1110

Query: 902  NSSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTN------YRS 961
             S  + + Q  Y  ++L+   + ++ P  TP+   L+L K    TTV+         Y S
Sbjct: 1111 TSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSS 1170

Query: 962  IVGSLRY-LVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSE 1021
             VGSL Y +V +RPD+A++VG VSRF+E P +EH  AVK ILRY+ GT G  +  C G  
Sbjct: 1171 AVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCL--CFGGS 1230

Query: 1022 KEKLKLVGYSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQKVVALSSCEAEYIAASM 1081
               LK  GY+D+DMAGD+D+RKS++G ++  SGGAI WQS  QK VALS+ EAEYIAA+ 
Sbjct: 1231 DPILK--GYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATE 1290

Query: 1082 AATQGIWLARLMEELIGRESDSPMLYIDNKATISLIKNPVLHDRSKHIETRFHYIRECAD 1141
               + IWL R ++EL G      ++Y D+++ I L KN + H R+KHI+ R+H+IRE  D
Sbjct: 1291 TGKEMIWLKRFLQEL-GLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVD 1325

Query: 1142 RGLIKIDFIRTEEQLGDIFTKSLARVKFEELRSKIGV 1158
               +K+  I T E   D+ TK + R KFE  +  +G+
Sbjct: 1351 DESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of CmoCh11G007290 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 547.7 bits (1410), Expect = 3.3e-154
Identity = 366/1236 (29.61%), Postives = 592/1236 (47.90%), Query Frame = 0


Query: 23   IQCSNCGKRGHLSRNCWSK---LRNKEKAEKAQAHVAQSEEDEPALFMVTACVPNFDSKS 82
            ++C +CG+ GH+ ++C+     L NK K  + Q   A S                     
Sbjct: 230  VKCHHCGREGHIKKDCFHYKRILNNKNKENEKQVQTATSH-------------------- 289

Query: 83   DDDVEPKKELQLGVAKLAPTGEPIQLEEERVFAQIGERDEQHEHQQWILDTGATNHMTGA 142
                        G+A +       ++    V    G          ++LD+GA++H+   
Sbjct: 290  ------------GIAFMVK-----EVNNTSVMDNCG----------FVLDSGASDHLIND 349

Query: 143  RSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFVSKGG------EHR-KLTDVYFIPRLK 202
             S +++       +V+      + +  +G  ++ +K G      +H   L DV F     
Sbjct: 350  ESLYTD-------SVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDVLFCKEAA 409

Query: 203  ANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILELEIDQPVSLSAKT 262
             NL+S+ +L E G  I  ++  + I  N   ++  +    N    + +   Q  S++AK 
Sbjct: 410  GNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNN----VPVINFQAYSINAKH 469

Query: 263  EEVSWRWHARYGHLNFPALEKLQKKELVHGLPEIKGVN---KLCDGCLIGKQRRTPFPS- 322
            +     WH R+GH++   L ++++K +      +  +    ++C+ CL GKQ R PF   
Sbjct: 470  KNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQL 529

Query: 323  RTAYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAKSEAAEAIKR 382
            +       PL +VH D+CGPI P T   K+ F++ VD  + +    L++ KS+     + 
Sbjct: 530  KDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQD 589

Query: 383  IKARAEAECEKKMRVLRTDRGGEFTSASFNKYCDEIGIQRHLTAPYSPQQNGVVERRNQT 442
              A++EA    K+  L  D G E+ S    ++C + GI  HLT P++PQ NGV ER  +T
Sbjct: 590  FVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRT 649

Query: 443  IVGTARSLLVTAGMPGRFWGEAVMTAVYLLNRSPTRSL--DGKTPYEAWYNKKPTVHHFR 502
            I   AR+++  A +   FWGEAV+TA YL+NR P+R+L    KTPYE W+NKKP + H R
Sbjct: 650  ITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLR 709

Query: 503  VFGCVAYMKVTRPHLAKLDPGGLKVVFIGYEPGSKAYRLYDPVGGRAHVSRDVVFD---- 562
            VFG   Y+ +      K D    K +F+GYEP    ++L+D V  +  V+RDVV D    
Sbjct: 710  VFGATVYVHIKNKQ-GKFDDKSFKSIFVGYEP--NGFKLWDAVNEKFIVARDVVVDETNM 769

Query: 563  --------ESTFWQWNDVIETDRNPNQFTVEYLVTEPEEG----------GAQHQETSPP 622
                    E+ F + +   E    PN          P E            ++  E    
Sbjct: 770  VNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESENKNF 829

Query: 623  PAGA--------PPEPVEFATPRTADSTLDADHDTDLEARYRRMDDLV----GGGEP--- 682
            P  +        P E  E    +    + +++     E++ R+ DD +    G G P   
Sbjct: 830  PNDSRKIIQTEFPNESKECDNIQFLKDSKESNKYFLNESKKRKRDDHLNESKGSGNPNES 889

Query: 683  ------------------------------------PGLAARELEE-----VAELHAVSA 742
                                                P ++  E +      V   H +  
Sbjct: 890  RESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFN 949

Query: 743  DEPNTFAE---AEKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEK 802
            D PN+F E    +    W +A+  E+ +   N TW++   P     +  +WVF +K NE 
Sbjct: 950  DVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNEL 1009

Query: 803  GEVVKHKARLVAKGYVQKQGVDFEEVFAPVARLESVRFLLAIAAHHSWEVHHMDVKSAFL 862
            G  +++KARLVA+G+ QK  +D+EE FAPVAR+ S RF+L++   ++ +VH MDVK+AFL
Sbjct: 1010 GNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFL 1069

Query: 863  NGELKETVYVRQPPGFLDNDNPNKVLRLHKALYGLRQAPRAWNAKLDSTLLSLNFKRCAS 922
            NG LKE +Y+R P G   + N + V +L+KA+YGL+QA R W    +  L    F   + 
Sbjct: 1070 NGTLKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSV 1129

Query: 923  EHGMYTYGHG--KKRLIVGVYVDDLIITGGDVGVLGRFKKEMSKNFEMSDLGVLSYYLGI 982
            +  +Y    G   + + V +YVDD++I  GD+  +  FK+ + + F M+DL  + +++GI
Sbjct: 1130 DRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGI 1189

Query: 983  EVQQNSSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIV 1042
             ++     I + QSAY +K+L    + + N   TP+ +++      +     +T  RS++
Sbjct: 1190 RIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDC-NTPCRSLI 1249

Query: 1043 GSLRY-LVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSEKE 1102
            G L Y ++ +RPDL  +V  +SR+      E    +KR+LRY+ GT    + +      E
Sbjct: 1250 GCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFE 1309

Query: 1103 KLKLVGYSDSDMAGDVDDRKSTSGMIY-FLSGGAICWQSTKQKVVALSSCEAEYIAASMA 1158
              K++GY DSD AG   DRKST+G ++       ICW + +Q  VA SS EAEY+A   A
Sbjct: 1310 N-KIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEA 1369

[Close]

BLAST of CmoCh11G007290 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 544.7 bits (1402), Expect = 2.8e-153
Identity = 362/1147 (31.56%), Postives = 533/1147 (46.47%), Query Frame = 0


Query: 121  HEHQQWILDTGATNHMTGARSAFSELDSGIRG-TVKFGDGSVVEIEGRGTILFVSKGGEH 180
            +    W+LD+GAT+H+T   +  S       G  V   DGS + I   G+    +K    
Sbjct: 326  YSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTK-SRP 385

Query: 181  RKLTDVYFIPRLKANLVSLGQL-DETGCFISIERGLLKICDNQRRLLTQARRTTNRLYIL 240
              L ++ ++P +  NL+S+ +L +  G  +       ++ D    +     +T + LY  
Sbjct: 386  LNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEW 445

Query: 241  ELEIDQPVSL--SAKTEEVSWRWHARYGHLNFPALEKLQKKELVHGLPEIKGVNKL--CD 300
             +   QPVSL  S  ++     WHAR GH   PA   L      + L  +   +K   C 
Sbjct: 446  PIASSQPVSLFASPSSKATHSSWHARLGH---PAPSILNSVISNYSLSVLNPSHKFLSCS 505

Query: 301  GCLIGKQRRTPFPSRTAYRADEPLELVHGDI-CGPIKPATPGGKSLFLLLVDDKSRFMWL 360
             CLI K  + PF S++   +  PLE ++ D+   PI   +      +++ VD  +R+ WL
Sbjct: 506  DCLINKSNKVPF-SQSTINSTRPLEYIYSDVWSSPI--LSHDNYRYYVIFVDHFTRYTWL 565

Query: 361  TLLQAKSEAAEAIKRIKARAEAECEKKMRVLRTDRGGEFTSASFNKYCDEIGIQRHLTAP 420
              L+ KS+  E     K   E   + ++    +D GGEF   +  +Y  + GI    + P
Sbjct: 566  YPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISHLTSPP 625

Query: 421  YSPQQNGVVERRNQTIVGTARSLLVTAGMPGRFWGEAVMTAVYLLNRSPTRSLDGKTPYE 480
            ++P+ NG+ ER+++ IV T  +LL  A +P  +W  A   AVYL+NR PT  L  ++P++
Sbjct: 626  HTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQ 685

Query: 481  AWYNKKPTVHHFRVFGCVAYMKVTRPHLAKLDPGGLKVVFIGYEPGSKAYRLYDPVGGRA 540
              +   P     RVFGC  Y  +   +  KLD    + VF+GY     AY        R 
Sbjct: 686  KLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRL 745

Query: 541  HVSRDVVFDESTFWQWNDVIETDRNPNQFTVEYLVTEPEEGGAQHQETSPPP-------A 600
            ++SR V FDE+ F   N +        Q      V  P           P P       A
Sbjct: 746  YISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHA 805

Query: 601  GAPPE--PVEFATPRTADSTLDADHDTDLEARYRRMDDLVGGGEP--------------- 660
              PP      F   + + S LD+   +   +          G +P               
Sbjct: 806  ATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQ 865

Query: 661  -----------PGLAARELEEVAE------------------------------------ 720
                       P   A+ L   A+                                    
Sbjct: 866  NTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIV 925

Query: 721  -------------------------------LHAVSADEPNTFAEAEKNPCWRKAMQEEM 780
                                           +   +  EP T  +A K+  WR AM  E+
Sbjct: 926  NNNNQAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEI 985

Query: 781  TSITENQTWSLEDMPPGH-RAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEE 840
             +   N TW L   PP H   +G +W+F  K N  G + ++KARLVAKGY Q+ G+D+ E
Sbjct: 986  NAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAE 1045

Query: 841  VFAPVARLESVRFLLAIAAHHSWEVHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPNKV 900
             F+PV +  S+R +L +A   SW +  +DV +AFL G L + VY+ QPPGF+D D PN V
Sbjct: 1046 TFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYV 1105

Query: 901  LRLHKALYGLRQAPRAWNAKLDSTLLSLNFKRCASEHGMYTYGHGKKRLIVGVYVDDLII 960
             +L KALYGL+QAPRAW  +L + LL++ F    S+  ++    GK  + + VYVDD++I
Sbjct: 1106 CKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILI 1165

Query: 961  TGGDVGVLGRFKKEMSKNFEMSDLGVLSYYLGIEVQQNSSGISICQSAYARKLLDTTGLV 1020
            TG D  +L      +S+ F + D   L Y+LGIE ++  +G+ + Q  Y   LL  T ++
Sbjct: 1166 TGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMI 1225

Query: 1021 DSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRYLVNSRPDLAYSVGYVSRFMEAP 1080
             + P  TPM    +L     T   D T YR IVGSL+YL  +RPD++Y+V  +S+FM  P
Sbjct: 1226 TAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMP 1285

Query: 1081 REEHLVAVKRILRYVAGTRGWGVRYCAGSEKEKLKLVGYSDSDMAGDVDDRKSTSGMIYF 1140
             EEHL A+KRILRY+AGT   G+    G+    L L  YSD+D AGD DD  ST+G I +
Sbjct: 1286 TEEHLQALKRILRYLAGTPNHGIFLKKGN---TLSLHAYSDADWAGDKDDYVSTNGYIVY 1345

Query: 1141 LSGGAICWQSTKQKVVALSSCEAEYIAASMAATQGIWLARLMEELIGRESDSPMLYIDNK 1158
            L    I W S KQK V  SS EAEY + +  +++  W+  L+ EL  R +  P++Y DN 
Sbjct: 1346 LGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNV 1405

[Close]

BLAST of CmoCh11G007290 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 3.0e-147
Identity = 355/1147 (30.95%), Postives = 541/1147 (47.17%), Query Frame = 0


Query: 126  WILDTGATNHMTGARSAFSELDSGIRG-TVKFGDGSVVEIEGRGTILFVSKGGEHRKLTD 185
            W+LD+GAT+H+T   +  S       G  V   DGS + I   G+   +        L  
Sbjct: 310  WLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGS-ASLPTSSRSLDLNK 369

Query: 186  VYFIPRLKANLVSLGQLDETGCFISIE--RGLLKICDNQRRLLTQARRTTNRLYILELEI 245
            V ++P +  NL+S+ +L  T   +S+E      ++ D    +     +T + LY   +  
Sbjct: 370  VLYVPNIHKNLISVYRLCNTN-RVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIAS 429

Query: 246  DQPVSLSAK--TEEVSWRWHARYGHLNFPALEKLQKKELVHGLPEIKGVNKL--CDGCLI 305
             Q VS+ A   ++     WH+R GH   P+L  L      H LP +   +KL  C  C I
Sbjct: 430  SQAVSMFASPCSKATHSSWHSRLGH---PSLAILNSVISNHSLPVLNPSHKLLSCSDCFI 489

Query: 306  GKQRRTPFPSRTAYRADEPLELVHGDI-CGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQ 365
             K  + PF S +   + +PLE ++ D+   PI   +      +++ VD  +R+ WL  L+
Sbjct: 490  NKSHKVPF-SNSTITSSKPLEYIYSDVWSSPI--LSIDNYRYYVIFVDHFTRYTWLYPLK 549

Query: 366  AKSEAAEAIKRIKARAEAECEKKMRVLRTDRGGEFTSASFNKYCDEIGIQRHLTAPYSPQ 425
             KS+  +     K+  E   + ++  L +D GGEF       Y  + GI    + P++P+
Sbjct: 550  QKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTPE 609

Query: 426  QNGVVERRNQTIVGTARSLLVTAGMPGRFWGEAVMTAVYLLNRSPTRSLDGKTPYEAWYN 485
             NG+ ER+++ IV    +LL  A +P  +W  A   AVYL+NR PT  L  ++P++  + 
Sbjct: 610  HNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFG 669

Query: 486  KKPTVHHFRVFGCVAYMKVTRPHLAKLDPGGLKVVFIGYEPGSKAYRLYDPVGGRAHVSR 545
            + P     +VFGC  Y  +   +  KL+    +  F+GY     AY       GR + SR
Sbjct: 670  QPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSR 729

Query: 546  DVVFDESTF--------WQWNDVIETDRNPNQFTVEYLVTEPEEGGA-----QHQETSPP 605
             V FDE  F           +    +D  PN  +   L T P    A      H +TSP 
Sbjct: 730  HVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPR 789

Query: 606  PAGAPP------------EPVEFATPRTADSTLDADHDTDLEARYRRMDDLVGGGE---- 665
            P  +P                  ++P +++ T  + +     A+  +  +          
Sbjct: 790  PPSSPSPLCTTQVSSSNLPSSSISSPSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPILNN 849

Query: 666  --------------------------------------------------PPGLAARELE 725
                                                              PP L A  + 
Sbjct: 850  PNPNSPSPNSPNQNSPLPQSPISSPHIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPII 909

Query: 726  EV-----AELHAVSA----------------------DEPNTFAEAEKNPCWRKAMQEEM 785
            +V        H+++                        EP T  +A K+  WR+AM  E+
Sbjct: 910  QVNAQAPVNTHSMATRAKDGIRKPNQKYSYATSLAANSEPRTAIQAMKDDRWRQAMGSEI 969

Query: 786  TSITENQTWSL-EDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEE 845
             +   N TW L    PP    +G +W+F  K N  G + ++KARLVAKGY Q+ G+D+ E
Sbjct: 970  NAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAE 1029

Query: 846  VFAPVARLESVRFLLAIAAHHSWEVHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPNKV 905
             F+PV +  S+R +L +A   SW +  +DV +AFL G L + VY+ QPPGF+D D P+ V
Sbjct: 1030 TFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYV 1089

Query: 906  LRLHKALYGLRQAPRAWNAKLDSTLLSLNFKRCASEHGMYTYGHGKKRLIVGVYVDDLII 965
             RL KA+YGL+QAPRAW  +L + LL++ F    S+  ++    G+  + + VYVDD++I
Sbjct: 1090 CRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILI 1149

Query: 966  TGGDVGVLGRFKKEMSKNFEMSDLGVLSYYLGIEVQQNSSGISICQSAYARKLLDTTGLV 1025
            TG D  +L      +S+ F + +   L Y+LGIE ++   G+ + Q  Y   LL  T ++
Sbjct: 1150 TGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNML 1209

Query: 1026 DSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRYLVNSRPDLAYSVGYVSRFMEAP 1085
             + P  TPM    +L     T   D T YR IVGSL+YL  +RPDL+Y+V  +S++M  P
Sbjct: 1210 TAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMP 1269

Query: 1086 REEHLVAVKRILRYVAGTRGWGVRYCAGSEKEKLKLVGYSDSDMAGDVDDRKSTSGMIYF 1145
             ++H  A+KR+LRY+AGT   G+    G+    L L  YSD+D AGD DD  ST+G I +
Sbjct: 1270 TDDHWNALKRVLRYLAGTPDHGIFLKKGN---TLSLHAYSDADWAGDTDDYVSTNGYIVY 1329

Query: 1146 LSGGAICWQSTKQKVVALSSCEAEYIAASMAATQGIWLARLMEELIGRESDSPMLYIDNK 1158
            L    I W S KQK V  SS EAEY + +  +++  W+  L+ EL  + S  P++Y DN 
Sbjct: 1330 LGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNV 1389

[Close]

BLAST of CmoCh11G007290 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 204.1 bits (518), Expect = 9.0e-51
Identity = 114/305 (37.38%), Postives = 173/305 (56.72%), Query Frame = 0


Query: 758  MDVKSAFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALYGLRQAPRAWNAKLDSTLLS 817
            MDV +AFLN  + E +YV+QPPGF++  NP+ V  L+  +YGL+QAP  WN  +++TL  
Sbjct: 1    MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 818  LNFKRCASEHGMYTYGHGKKRLIVGVYVDDLIITGGDVGVLGRFKKEMSKNFEMSDLGVL 877
            + F R   EHG+Y        + + VYVDDL++      +  R K+E++K + M DLG +
Sbjct: 61   IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 878  SYYLGIEVQQNSSG-ISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDS 937
              +LG+ + Q+S+G I++    Y  K    + +     T+TP+     L +  +    D 
Sbjct: 121  DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180

Query: 938  TNYRSIVGSLRYLVNS-RPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRY 997
            T Y+SIVG L +  N+ RPD++Y V  +SRF+  PR  HL + +R+LRY+  TR   ++Y
Sbjct: 181  TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240

Query: 998  CAGSEKEKLKLVGYSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQK-VVALSSCEAE 1057
             +GS+   L L  Y D+      D   ST G +  L+G  + W S K K V+ + S EAE
Sbjct: 241  RSGSQ---LALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAE 300

Query: 1058 YIAAS 1060
            YI AS
Sbjct: 301  YITAS 302

[Close]

BLAST of CmoCh11G007290 vs. ExPASy TrEMBL
Match: Q7XPB1 (OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0026E15.10 PE=4 SV=2)

HSP 1 Score: 1392.9 bits (3604), Expect = 0.0e+00
Identity = 713/1180 (60.42%), Postives = 877/1180 (74.32%), Query Frame = 0


Query: 4    GRTRG-------KDGNQKKESTNGR-PIQCSNCGKRGHLSRNCWSKLRNKEKAEKAQAHV 63
            GR RG       K+   K  +  GR P  C NCGKRGH +++C    R+K KA+  QA+V
Sbjct: 274  GRGRGKKDDGAPKEAQPKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQ--QAYV 333

Query: 64   AQSEEDEPALFMVTACVPNFDSKSDDDVEPKKELQLGVAKLAPT--GEPIQLEEERVFAQ 123
            AQ E++EPAL +        D        P   +    A  AP+  GE + + E +VFAQ
Sbjct: 334  AQEEDEEPALLLAKV---QLDPPRPRVAAPTNVVSPPSAPRAPSPIGE-LAVVEAKVFAQ 393

Query: 124  IGERDEQHEHQQWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFV 183
            + +  E H+   WILDTGATNHMTG+RSAF+ELD+ + GTV+FGDGSVV IEGR T+LF 
Sbjct: 394  LDDGGE-HDPAMWILDTGATNHMTGSRSAFAELDTAVTGTVRFGDGSVVRIEGRVTVLFS 453

Query: 184  SKGGEHRKLTDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTN 243
             + GEHR +  VY+IPRL AN+VSLGQLD +G  + I  G+L + D +  LL + RR+ +
Sbjct: 454  CRFGEHRGIAGVYYIPRLTANIVSLGQLDRSGSKVLIHHGILHVWDPRGHLLVRVRRSDD 513

Query: 244  RLYILELEIDQPVSLSAKTEEVSWRWHARYGHLNFPALEKLQKKELVHGLPEIKGVNKLC 303
             LY ++L+ID+PV L+A++ E +WRWHARYGHLNFPAL KL ++E+V GLP ++ V ++C
Sbjct: 514  CLYTIKLDIDRPVCLAARSAEPAWRWHARYGHLNFPALRKLAQQEMVRGLPLLQQVTQVC 573

Query: 304  DGCLIGKQRRTPFPSRTAYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWL 363
            DGCL+GKQRR  FP+++ YRADE LELVHGD+CGPI+PATP G   FLLLVDD SR+MWL
Sbjct: 574  DGCLLGKQRRAAFPTQSKYRADEHLELVHGDLCGPIEPATPAGNRYFLLLVDDMSRYMWL 633

Query: 364  TLLQAKSEAAEAIKRIKARAEAECEKKMRVLRTDRGGEFTSASFNKYCDEIGIQRHLTAP 423
            T++++K EAA AIK  +ARAE E  +K+R LR DRG EFTS  F +YC  +G+ R LTAP
Sbjct: 634  TMIRSKDEAANAIKHFQARAEVESGRKLRALRMDRGSEFTSIEFGEYCANLGVGRQLTAP 693

Query: 424  YSPQQNGVVERRNQTIVGTARSLLVTAGMPGRFWGEAVMTAVYLLNRSPTRSLDGKTPYE 483
            YSPQQNGVVERRNQTIV TARS++   G+PGRFWGEA+ TAV+LLNRSPT+SLD +TPYE
Sbjct: 694  YSPQQNGVVERRNQTIVATARSMMKAKGVPGRFWGEAMSTAVFLLNRSPTKSLDNQTPYE 753

Query: 484  AWYNKKPTVHHFRVFGCVAYMKVTRPHLAKLDPGGLKVVFIGYEPGSKAYRLYDPVGGRA 543
            AWY + P VH  R FGCV ++K+T+P L KLD     +V +GYE GSKAYRLYDPV  R 
Sbjct: 754  AWYGQWPAVHFLRTFGCVGHVKITKPGLKKLDDRSAPMVLLGYEQGSKAYRLYDPVSERV 813

Query: 544  HVSRDVVFDESTFWQWNDVIETDRNP--NQFTVEYLVT--------------EPEEGGAQ 603
            HVSRDVVFDE   W W  V   D  P    FTVE +VT               P      
Sbjct: 814  HVSRDVVFDEDIAWDWGPV-TPDGAPQLEPFTVEQVVTTTIGTAPASSPTPPSPPSPAPS 873

Query: 604  HQETSPPPAGAPPEPVEFATPRTADSTLDADHDTDLEARYRRMDDLVGGGEPPGLAAREL 663
               T  PP+   PE VEF TP T DS LDAD D D+  RYR +D+L+G   PPG A R L
Sbjct: 874  APTTPAPPSPPSPEAVEFVTPPTQDSILDADADDDVVPRYRLVDNLLGNASPPGHAPRVL 933

Query: 664  EEVAELHAVSADEPNTFAEAEKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIGLKWV 723
            E++ ELH VSADEP + AEAE +P WR AMQ+E+ +I +N TWSL D+P GHRAIGLKWV
Sbjct: 934  EQL-ELHVVSADEPASLAEAEADPSWRGAMQDELNAIVDNDTWSLTDLPHGHRAIGLKWV 993

Query: 724  FKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEEVFAPVARLESVRFLLAIAAHHSWEVHH 783
            +KLKR+E+G +V++KARLVAKGYVQ+QGVDF+EVFA VARLESVR LLA+AAH  W+VHH
Sbjct: 994  YKLKRDEQGAIVRYKARLVAKGYVQRQGVDFDEVFALVARLESVRLLLAVAAHQGWQVHH 1053

Query: 784  MDVKSAFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALYGLRQAPRAWNAKLDSTLLS 843
            MDVKSAFLNGEL E VYV QPPGF+D+++ NKV RLHKALYGLRQAPRAWNAKLDS+LLS
Sbjct: 1054 MDVKSAFLNGELLEEVYVSQPPGFVDDNHKNKVYRLHKALYGLRQAPRAWNAKLDSSLLS 1113

Query: 844  LNFKRCASEHGMYTYGHGKKRLIVGVYVDDLIITGGDVGVLGRFKKEMSKNFEMSDLGVL 903
            L F R +SEHG+YT   G +RL+VGVYVDDLIITG     +  FK EM K F+MSDLG L
Sbjct: 1114 LGFHRSSSEHGVYTRTRGGRRLMVGVYVDDLIITGDHDDEIRSFKGEMMKLFKMSDLGAL 1173

Query: 904  SYYLGIEVQQNSSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDST 963
             YYLGIEV Q+S GI++ Q+AYA K+L+  GL D NP +TPME RL+LRK      VD+T
Sbjct: 1174 RYYLGIEVTQDSDGITLGQAAYAGKILEKAGLKDCNPCQTPMEVRLKLRKGSDFPLVDAT 1233

Query: 964  NYRSIVGSLRYLVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCA 1023
             YRS+VGSLRYLVN+RPDLA+SVGYVSRFME+PRE+HL AV+RILRYVAGTR WG+R+  
Sbjct: 1234 LYRSLVGSLRYLVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRCWGIRFGP 1293

Query: 1024 GSEKEKLKLVGYSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQKVVALSSCEAEYIA 1083
            G+      LVGYSDSD+AGD D+RKSTSG I+F++GG + WQS+KQKVVALSSCEAEYIA
Sbjct: 1294 GARCALPMLVGYSDSDLAGDPDERKSTSGQIFFINGGPVTWQSSKQKVVALSSCEAEYIA 1353

Query: 1084 ASMAATQGIWLARLMEELIGRESDSPMLYIDNKATISLIKNPVLHDRSKHIETRFHYIRE 1143
            A+ A  QG+WLARL+ E++G E  +P+L +DN++TISLIKNPV HDRSKHI+ ++HYIRE
Sbjct: 1354 AAAATCQGVWLARLLAEVLGDEITAPLLKVDNQSTISLIKNPVHHDRSKHIDVKYHYIRE 1413

Query: 1144 CADRGLIKIDFIRTEEQLGDIFTKSLARVKFEELRSKIGV 1158
            CA++ LI++ F+ T EQLGDIFTKSL R +F+ELRSKIGV
Sbjct: 1414 CAEKKLIEMMFVGTAEQLGDIFTKSLGRTRFQELRSKIGV 1440

[Close]

BLAST of CmoCh11G007290 vs. ExPASy TrEMBL
Match: A0B9X7 (OSIGBa0135C09.3 protein OS=Oryza sativa OX=4530 GN=OSIGBa0135C09.3 PE=4 SV=1)

HSP 1 Score: 1357.0 bits (3511), Expect = 0.0e+00
Identity = 699/1180 (59.24%), Postives = 860/1180 (72.88%), Query Frame = 0


Query: 4    GRTRG-------KDGNQKKESTNGR-PIQCSNCGKRGHLSRNCWSKLRNKEKAEKAQAHV 63
            GR RG       K+   K  +  GR P  C NCGKRGH +++C    R+K KA+  QA+V
Sbjct: 207  GRGRGKKDDGAPKEAQSKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQ--QAYV 266

Query: 64   AQSEEDEPALFMVTACVPNFDSKSDDDVEPKKELQLGVAKLAPT--GEPIQLEEERVFAQ 123
            AQ E++EPAL +        D        P   +    A  AP+  GE + + E +VFAQ
Sbjct: 267  AQEEDEEPALLLAKV---QLDPPRPRVAAPTNVVSPPSAPRAPSPMGE-LAVVEAKVFAQ 326

Query: 124  IGERDEQHEHQQWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFV 183
            + +  E H+   WILDTGATNHMTG+RSAF++LD+ + GTV+FGDGSVV IEGRGT+LF 
Sbjct: 327  LDDGGE-HDPAMWILDTGATNHMTGSRSAFAKLDTAVTGTVRFGDGSVVRIEGRGTVLFS 386

Query: 184  SKGGEHRKLTDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTN 243
             + GEHR +  VY+IPRL AN+VSLGQLD +G  + I  G+L++ D +  LL + RR+ +
Sbjct: 387  CRFGEHRGIAGVYYIPRLTANIVSLGQLDRSGSKVLIHHGVLRVWDPRGHLLVRVRRSDD 446

Query: 244  RLYILELEIDQPVSLSAKTEEVSWRWHARYGHLNFPALEKLQKKELVHGLPEIKGVNKLC 303
             LY ++L ID+PV L+A++ + +WRWHARYGHLNFP+L KL ++E+V GLP ++ V ++C
Sbjct: 447  CLYTIKLNIDRPVYLAARSAKPAWRWHARYGHLNFPSLRKLAQQEMVRGLPLLQQVTQVC 506

Query: 304  DGCLIGKQRRTPFPSRTAYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWL 363
            DGCL+GKQRR  FP+++ YRADE LELVHGD+CGPI+PATP G   FLLLVDD SR+MWL
Sbjct: 507  DGCLLGKQRRAAFPTQSKYRADEHLELVHGDLCGPIEPATPAGNRYFLLLVDDMSRYMWL 566

Query: 364  TLLQAKSEAAEAIKRIKARAEAECEKKMRVLRTDRGGEFTSASFNKYCDEIGIQRHLTAP 423
            TL+++K EAA AIK  +A AE E  +K+R LRTDRGGEFTS  F +YC  + + R LTAP
Sbjct: 567  TLIRSKDEAANAIKHFQAHAEVESGRKLRALRTDRGGEFTSIEFGEYCANLRVGRQLTAP 626

Query: 424  YSPQQNGVVERRNQTIVGTARSLLVTAGMPGRFWGEAVMTAVYLLNRSPTRSLDGKTPYE 483
            YSPQQNGVVERRNQTIV TARS++   G+PGRFWGEA+ TAV+LLNRSPT+SLD +TPYE
Sbjct: 627  YSPQQNGVVERRNQTIVATARSMMKAKGVPGRFWGEAMSTAVFLLNRSPTKSLDNQTPYE 686

Query: 484  AWYNKKPTVHHFRVFGCVAYMKVTRPHLAKLDPGGLKVVFIGYEPGSKAYRLYDPVGGRA 543
            AWY ++P VH  R FGCV ++K+T+P L KLD     +V +GYE GSKAYRLYDPV  R 
Sbjct: 687  AWYGQRPAVHFLRTFGCVGHVKITKPGLKKLDDRSAPMVLLGYEQGSKAYRLYDPVSERV 746

Query: 544  HVSRDVVFDESTFWQWNDVIETDRNP--NQFTVEYLVT--------------EPEEGGAQ 603
            HVSRDVVFDE   W W   +  D  P    FTVE +VT               P      
Sbjct: 747  HVSRDVVFDEDAAWDWGP-LTPDGAPQLEPFTVEQVVTTTIGTAPASSLTPPSPPSPAPS 806

Query: 604  HQETSPPPAGAPPEPVEFATPRTADSTLDADHDTDLEARYRRMDDLVGGGEPPGLAAREL 663
               T  PP+   PE VEF TP T DS LDAD D D+  RY  +D+L+G   PPG A R L
Sbjct: 807  APTTPAPPSPPSPEAVEFVTPPTQDSILDADADDDVVPRYHLVDNLLGNASPPGHAPRVL 866

Query: 664  EEVAELHAVSADEPNTFAEAEKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIGLKWV 723
            E++ ELH VSADEP + AEAE +P WR AMQ+E+ +I +N TWSL D+P GHRAIGLKW 
Sbjct: 867  EQL-ELHVVSADEPASLAEAEADPNWRGAMQDELNAIVDNDTWSLTDLPHGHRAIGLKW- 926

Query: 724  FKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEEVFAPVARLESVRFLLAIAAHHSWEVHH 783
                           ARLVAKGYVQ+QGVDF+EVFAPVARLE VR LLAIAAH  W+VHH
Sbjct: 927  ---------------ARLVAKGYVQRQGVDFDEVFAPVARLELVRLLLAIAAHQGWQVHH 986

Query: 784  MDVKSAFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALYGLRQAPRAWNAKLDSTLLS 843
            MDVKSAFLNGEL E VYV QPPGF+D+++ NKV RLHKALYGLRQAPRAWN KLDS+LLS
Sbjct: 987  MDVKSAFLNGELLEEVYVSQPPGFVDDNHKNKVYRLHKALYGLRQAPRAWNTKLDSSLLS 1046

Query: 844  LNFKRCASEHGMYTYGHGKKRLIVGVYVDDLIITGGDVGVLGRFKKEMSKNFEMSDLGVL 903
            L F R +SEHG+YT   G +RL VGVYVDDLIITG     +  FK EM K F+MSDLG L
Sbjct: 1047 LGFHRSSSEHGVYTRTRGGRRLTVGVYVDDLIITGDHDDEIRSFKGEMMKLFKMSDLGAL 1106

Query: 904  SYYLGIEVQQNSSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDST 963
             YYLGIEV Q+S GI++ Q+AYA K+L+  GL D NP +TPME RL+LRK      VD+T
Sbjct: 1107 RYYLGIEVTQDSDGITLGQAAYAGKILEKAGLKDCNPCQTPMEVRLKLRKGSDFPLVDAT 1166

Query: 964  NYRSIVGSLRYLVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCA 1023
             YRS+VGSLRYLVN+RPDLA+SVGYVSRFME+PRE+HL AV+RILRYVAGTR WG+R+  
Sbjct: 1167 LYRSLVGSLRYLVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRCWGIRFGP 1226

Query: 1024 GSEKEKLKLVGYSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQKVVALSSCEAEYIA 1083
            G+      LVGYSDSD+AGD D+RKSTSG I+F++GG + WQS+K+KVVALSSCEAEYIA
Sbjct: 1227 GARCALPMLVGYSDSDLAGDPDERKSTSGQIFFINGGPVTWQSSKKKVVALSSCEAEYIA 1286

Query: 1084 ASMAATQGIWLARLMEELIGRESDSPMLYIDNKATISLIKNPVLHDRSKHIETRFHYIRE 1143
            A+    QG+WLARL+ E++G E  +P+L +DN++TISLIKNPV HDRSKHI+ ++HYIRE
Sbjct: 1287 AAATTCQGVWLARLLAEVLGDEIAAPLLKVDNQSTISLIKNPVHHDRSKHIDVKYHYIRE 1346

Query: 1144 CADRGLIKIDFIRTEEQLGDIFTKSLARVKFEELRSKIGV 1158
            CA++ LI++ F+ T EQLGDIFTKSL R +F+ELRSKIGV
Sbjct: 1347 CAEKKLIEMMFVGTAEQLGDIFTKSLGRTRFQELRSKIGV 1357

[Close]

BLAST of CmoCh11G007290 vs. ExPASy TrEMBL
Match: Q0J5Y3 (Os08g0389500 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0389500 PE=4 SV=1)

HSP 1 Score: 1315.8 bits (3404), Expect = 0.0e+00
Identity = 674/1183 (56.97%), Postives = 843/1183 (71.26%), Query Frame = 0


Query: 10   DGNQKKESTNGRPIQCSNCGKRGHLSRNCWSKLRNKEKAEKAQAHVAQSEEDEPALFMVT 69
            DG+ + + T+    +C  CGK+GH ++ C S+LR+       +AH+AQ EE+E  + MV 
Sbjct: 295  DGSNQPKKTD----KCRYCGKKGHWAKECRSRLRD-------EAHLAQGEEEEEPMLMVA 354

Query: 70   ACVPNFDSKSDDDVEPKKELQLGVAKLAPTGEPIQLEEERVFAQIGERDEQHEHQQWILD 129
                N  S S     P +   L      P  E I L+E ++F Q+G  +   E  +WILD
Sbjct: 355  TAQVNAISSS----SPPRFTSL------PALEQIHLDESKLFVQLG-GEHGGEATRWILD 414

Query: 130  TGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFVSKGGEHRKLTDVYFIP 189
            TGATNHMTG RSAFSEL++GIRGTVKFGDGSVV IEGRGT+LF  K GEH+ L  VY IP
Sbjct: 415  TGATNHMTGTRSAFSELNTGIRGTVKFGDGSVVGIEGRGTVLFKCKDGEHQALEGVYHIP 474

Query: 190  RLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILELEIDQPVSLS 249
            RL  N+VSLGQLDE     S E G+LKI + QRRLL +  R+ NRLY+++L I +PV L+
Sbjct: 475  RLTTNIVSLGQLDEEKFKWSCEDGVLKIWNKQRRLLAKVVRSPNRLYVVKLNIGRPVCLA 534

Query: 250  AKTEEVSWRWHARYGHLNFPALEKLQKKELVHGLPEIKGVNKLCDGCLIGKQRRTPFPSR 309
            A+  +++WRWHAR+GHLNF ALEKL +  +V GLP I  V+++CD CL+GKQRR PFPS+
Sbjct: 535  AQGGDIAWRWHARFGHLNFRALEKLGRAVMVRGLPLINHVDQVCDSCLVGKQRRLPFPSK 594

Query: 310  TAYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAKSEAAEAIKRI 369
              YRA E LELVHGDICGP+ PATP G  LFLLLVDD SR+MWL LL +K +A+ AIKR 
Sbjct: 595  AKYRAKEKLELVHGDICGPVTPATPSGNKLFLLLVDDLSRYMWLILLSSKDQASVAIKRF 654

Query: 370  KARAEAECEKKMRVLRTDRGGEFTSASFNKYCDEIGIQRHLTAPYSPQQNGVVERRNQTI 429
             A AEAE  +K+R LRTDRGGEFT+ +F +YC E GIQRHLTAPY+PQQNGVVERRNQT+
Sbjct: 655  LACAEAEAGRKLRTLRTDRGGEFTAHAFAEYCAEHGIQRHLTAPYTPQQNGVVERRNQTV 714

Query: 430  VGTARSLLVTAGMPGRFWGEAVMTAVYLLNRSPTRSLDGKTPYEAWYNKKPTVHHFRVFG 489
            +G ARS++    +PG FWGEAV TAV+LLNR+PT+ +DGKTP+E W+  KP VH  R FG
Sbjct: 715  MGMARSMMKAKSLPGWFWGEAVNTAVFLLNRAPTQCVDGKTPFEVWHGVKPPVHFLRTFG 774

Query: 490  CVAYMKVTRPHLAKLDPGGLKVVFIGYEPGSKAYRLYDPVGGRAHVSRDVVFDESTFWQW 549
            CVA++K     LAKLD   + +VF+GYE G+KAYR Y+PV  R HVSRD VF+E   W+W
Sbjct: 775  CVAHVKNGGQRLAKLDDRSMPMVFVGYEAGTKAYRFYNPVSRRVHVSRDAVFEEERSWEW 834

Query: 550  NDVIETDRNPNQ----FTVEYLVTEPE-EGG-------AQHQETSPP------------- 609
                E    P+     F VE+L T P  +GG       A  + TS P             
Sbjct: 835  G--AEKGAGPDDDIEPFVVEHLATGPTGQGGPVAATPTATQRSTSAPAPMAPPATPSQAG 894

Query: 610  ----------PAGAPPEPVEFATPRTADSTLDADHDTDLEARYRRMDDLVGGGEPPGLAA 669
                      PA A    +EFA+P   D  LD DHD D+  R+R +D+L+G   PPGLA 
Sbjct: 895  TPTHGAGPRTPASASSPAIEFASPPQGDLDLDNDHDDDVPLRFRTVDNLLGASSPPGLAE 954

Query: 670  RELEEVAELHAVSADEPNTFAEAEKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIGL 729
            RE+ E   L     DEP T  EA++   WR+AM EEM SI  N+TWSL ++P G RAIGL
Sbjct: 955  REVTE--GLMVAIEDEPATAEEAKQVKEWREAMIEEMASIEHNKTWSLVELPAGQRAIGL 1014

Query: 730  KWVFKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEEVFAPVARLESVRFLLAIAAHHSWE 789
            KWVFK+K++E G + KHKARLVAKGYVQ+QG+D+EEVFAPVAR+ESVR LLA+AAH SW 
Sbjct: 1015 KWVFKIKKDEHGNITKHKARLVAKGYVQRQGIDYEEVFAPVARIESVRVLLAVAAHRSWS 1074

Query: 790  VHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALYGLRQAPRAWNAKLDST 849
            VHHMDVKSAFLNG+L E VYV+QPPGF+   +  KVL+LHKALYGL+QAPRAWN+KLDS+
Sbjct: 1075 VHHMDVKSAFLNGDLAEEVYVQQPPGFVAAGHERKVLKLHKALYGLKQAPRAWNSKLDSS 1134

Query: 850  LLSLNFKRCASEHGMYTYGHGKKRLIVGVYVDDLIITGGDVGVLGRFKKEMSKNFEMSDL 909
            LL L F R   EHG+YT   G+KRL+VG+YVDDLIITGG   V+  FK EM   F MSDL
Sbjct: 1135 LLMLGFARSECEHGLYTRSDGEKRLVVGIYVDDLIITGGSTEVINTFKTEMKTLFRMSDL 1194

Query: 910  GVLSYYLGIEVQQNSSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTV 969
            GVLSYYLGIEV+Q   GI + Q+AYA+K+L+  G+   NP  TPMEARL+L K  T+  V
Sbjct: 1195 GVLSYYLGIEVRQGRRGIELLQAAYAKKILEKAGMGTCNPCATPMEARLKLSKQSTSPAV 1254

Query: 970  DSTNYRSIVGSLRYLVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVR 1029
            D+T YRS++GSLRYL+N+RPD+A++VGY+SRFME PR+EHL A+K +LRYVAGT  +G+ 
Sbjct: 1255 DATEYRSLIGSLRYLMNTRPDMAFAVGYLSRFMENPRQEHLAAMKHLLRYVAGTIDYGLV 1314

Query: 1030 YCAGSEKEKLKLVGYSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQKVVALSSCEAE 1089
            Y +G    +  LVGYSDSDMAGD+DDRKSTSG+IYFL G  + WQS KQ+VVALSSCEAE
Sbjct: 1315 YTSGD--TEFNLVGYSDSDMAGDIDDRKSTSGIIYFLGGNPVAWQSQKQRVVALSSCEAE 1374

Query: 1090 YIAASMAATQGIWLARLMEELIGRESDSPMLYIDNKATISLIKNPVLHDRSKHIETRFHY 1149
            YIA + AA QG+WL RL+++++G     P L +DN++ I+L KNPVLHDRSKHI+T+FH+
Sbjct: 1375 YIAGAAAACQGVWLRRLLQDVVGVSGPPPQLKMDNQSAIALSKNPVLHDRSKHIDTKFHF 1434

Query: 1150 IRECADRGLIKIDFIRTEEQLGDIFTKSLARVKFEELRSKIGV 1158
            +REC D G +++ F+ T+ QL DI TK+L R KF+ELR  IGV
Sbjct: 1435 LRECVDSGAVRLAFVSTQAQLADIMTKALGRSKFQELRELIGV 1449

[Close]

BLAST of CmoCh11G007290 vs. ExPASy TrEMBL
Match: Q0D6W3 (Os07g0434200 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0434200 PE=4 SV=1)

HSP 1 Score: 1275.8 bits (3300), Expect = 0.0e+00
Identity = 661/1174 (56.30%), Postives = 824/1174 (70.19%), Query Frame = 0


Query: 4    GRTRGKDGNQKKESTNGRPIQCSNCGKRGHLSRNCWSKLRNKEKAEKAQAHVAQSEEDEP 63
            G+ R   G         +  +C NCGK GH +++C    R+K K E  QAHV Q EEDEP
Sbjct: 52   GQGRNGSGGGDSAGPARKTDKCHNCGKLGHWAKDC----RSKPKQE--QAHVVQ-EEDEP 111

Query: 64   ALFMVT-ACVPNFDSKSDDDVEPKKELQLGVAKLAPTGEPIQLEEERVFAQIGERDEQHE 123
             L ++T  C+   +      V P            P  + ++L E++VFA + +  + H+
Sbjct: 112  TLMLMTGGCIDVVEETGAPCVTPAPPAP------RPRLDVVELVEQKVFAALDDATD-HD 171

Query: 124  HQQWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFVSKGGEHRKL 183
            +++WILDTGA+NHMTG+R+AFS++D+ + G V+ GDGS+V I GR TILF  K GEH  L
Sbjct: 172  NKRWILDTGASNHMTGSRAAFSDIDTNVTGNVRLGDGSLVRIGGRRTILFACKNGEHHML 231

Query: 184  TDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILELEI 243
               Y++P L AN++S+GQLDETG  + +E G++++ D Q RLL +  RT  RLY+L++ +
Sbjct: 232  HKAYYLPCLAANIISVGQLDETGFKVLVEDGVMRVWDEQHRLLARITRTPGRLYVLDINL 291

Query: 244  DQPVSLSAKTEEVSWRWHARYGHLNFPALEKLQKKELVHGLPEIKGVNKLCDGCLIGKQR 303
             +PV L A+  E +WRWHAR+GH+NF AL K+ ++ LV GLP +  V ++C+ CL GKQR
Sbjct: 292  ARPVYLMARAGEDAWRWHARFGHVNFTALRKMGREALVRGLPVLSQVEQVCEACLAGKQR 351

Query: 304  RTPFPSRTAYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAKSEA 363
            R PFP +  +RA EPL L+HGD+CGP+ PATP G   F LLVDD SR+MWL LL  K  A
Sbjct: 352  RAPFPQQALHRATEPLALLHGDLCGPVMPATPSGNRYFPLLVDDYSRYMWLVLLATKDAA 411

Query: 364  AEAIKRIKARAEAECEKKMRVLRTDRGGEFTSASFNKYCDEIGIQRHLTAPYSPQQNGVV 423
             +A+KR++A AE +  +K+R LRTDRGGEFT   F +YC E+G++R LTAPYSPQQNGVV
Sbjct: 412  PDAMKRVQAAAERKSGRKLRALRTDRGGEFTVGHFTEYCAELGLRRELTAPYSPQQNGVV 471

Query: 424  ERRNQTIVGTARSLLVTAGMPGRFWGEAVMTAVYLLNRSPTRSLDGKTPYEAWYNKKPTV 483
            ERRNQ++V TARS+L   G+PG FWGEAV TAVYLLNR  ++S+DGKTPYE W    P V
Sbjct: 472  ERRNQSVVSTARSMLKAKGLPGMFWGEAVNTAVYLLNRCSSKSIDGKTPYELWNGVTPAV 531

Query: 484  HHFRVFGCVAYMKVTRPHLAKLDPGGLKVVFIGYEPGSKAYRLYDPVGGRAHVSRDVVFD 543
            HH R FGCVA++KVT P   KLD     ++F+GYE GSKAYR+YDP   R HVSRDVVFD
Sbjct: 532  HHLRTFGCVAHVKVTAP-TKKLDDRSRPMIFVGYELGSKAYRVYDPATRRVHVSRDVVFD 591

Query: 544  ESTFWQWNDVIETDRNPNQFTVEYLV-----------TEPEEGGAQHQETSPPPAGAPP- 603
            E   W W+    T+ + + FT+EY             T  E GGA     SP     P  
Sbjct: 592  EEAQWNWDGEAATNVD-SDFTIEYTTVYHPATATPTQTGTEHGGAPASPRSPASGSTPTT 651

Query: 604  ------EPVEFAT-PRTADSTLDADHDTDLEARYRRMDDLVGGGEPPGLAARELEEVAEL 663
                   PVEF + P   +  LDADHD D   R+RR+DD++G   PPG A REL E  EL
Sbjct: 652  PPVAEVSPVEFVSPPPDVEDDLDADHD-DAPLRFRRIDDVLGPATPPGQAVRELSE--EL 711

Query: 664  HAVSADEPNTFAEAEKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRN 723
             AV+A+EP +FAEAE+  CWR+AM EEM SI  N+TW L D     R IGLKWV+K K++
Sbjct: 712  FAVTAEEPASFAEAEQLSCWRQAMIEEMRSIEANKTWRLVDPLARQRPIGLKWVYKAKKD 771

Query: 724  EKGEVVKHKARLVAKGYVQKQGVDFEEVFAPVARLESVRFLLAIAAHHSWEVHHMDVKSA 783
              G + K+KARLVAKGYVQ+QG+DF+EVFAPVARLESVR LLA AA   W VHHMDVKSA
Sbjct: 772  AAGNITKYKARLVAKGYVQRQGIDFDEVFAPVARLESVRLLLAHAACEGWAVHHMDVKSA 831

Query: 784  FLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALYGLRQAPRAWNAKLDSTLLSLNFKRC 843
            FLNGEL E VYV QPPGF+ +   +KVLRL KALYGLRQAPRAW +KLD++LLSL F R 
Sbjct: 832  FLNGELLEEVYVAQPPGFVVDGQEHKVLRLDKALYGLRQAPRAWYSKLDASLLSLGFHRS 891

Query: 844  ASEHGMYTYGHGKKRLIVGVYVDDLIITGGDVGVLGRFKKEMSKNFEMSDLGVLSYYLGI 903
             SEH +Y  G G++RL+VGVYVDDLIITGG+ G L +FK+EM   F+MSDLG+L YYLG+
Sbjct: 892  DSEHAVYMRGTGEQRLVVGVYVDDLIITGGNPGELKQFKEEMKGTFQMSDLGLLQYYLGL 951

Query: 904  EVQQNSSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIV 963
            EV Q   GI++ Q AYA K+L T G+V SNP+ TPME RL+L K     +VD+T+YR IV
Sbjct: 952  EVNQTEDGITVNQRAYAEKILQTAGMVASNPSLTPMETRLKLSKMSNAPSVDATDYRWIV 1011

Query: 964  GSLRYLVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSEKEK 1023
            GSLRYLVNSRPDLAYSVGYVSRFME P  EHL AVKR+LRYVAG+ G+G  Y     K+ 
Sbjct: 1012 GSLRYLVNSRPDLAYSVGYVSRFMEKPTTEHLAAVKRVLRYVAGSIGYGCHY---KRKKD 1071

Query: 1024 LKLVGYSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQKVVALSSCEAEYIAASMAAT 1083
              LVGYSDSD+AGDVD RKSTSG+ +FL    I WQS KQKVVALSSCEAEYIAA+ AA 
Sbjct: 1072 ASLVGYSDSDLAGDVDTRKSTSGVFFFLGDNLITWQSQKQKVVALSSCEAEYIAATTAAC 1131

Query: 1084 QGIWLARLMEELIGRESDSPMLYIDNKATISLIKNPVLHDRSKHIETRFHYIRECADRGL 1143
            QG+WLARL+ EL G E+D+  L IDN++ I L KNPV HDRSKHI+TR+HYIREC + G 
Sbjct: 1132 QGVWLARLLAELQGEEADAVTLRIDNQSAIMLSKNPVFHDRSKHIDTRYHYIRECIEEGR 1191

Query: 1144 IKIDFIRTEEQLGDIFTKSLARVKFEELRSKIGV 1158
            +K++FI T EQL DI TKSL R +F ELRS+IG+
Sbjct: 1192 VKVEFIGTNEQLADILTKSLGRDRFMELRSQIGL 1203

[Close]

BLAST of CmoCh11G007290 vs. ExPASy TrEMBL
Match: A0A1P8YYM3 (Reverse transcriptase OS=Zea mays OX=4577 GN=FGENESH_28 PE=4 SV=1)

HSP 1 Score: 1268.8 bits (3282), Expect = 0.0e+00
Identity = 663/1246 (53.21%), Postives = 821/1246 (65.89%), Query Frame = 0


Query: 25   CSNCGKRGHLSRNCWSKLRNKEKAEKAQAHVAQSEEDEPALFM----------------- 84
            C NCGK GH +++C  K       +K  AHVA+++EDEPAL                   
Sbjct: 401  CHNCGKGGHWAKDCRGK-------KKVVAHVAEAQEDEPALMYLAVETEEIAPGPPPAPP 460

Query: 85   -----------------------------------------------VTACVPNFDSKSD 144
                                                           V A  P    ++ 
Sbjct: 461  GGPHVHRAPGGPHVRADCELGPLPAPPGKAVGSLPARAMAAQRRGTGVYAAGPRLQDRTP 520

Query: 145  DDVEPKK----ELQLGVAKLAPTGEPIQLEEERVFAQIGERDEQHEHQ--QWILDTGATN 204
              + P       L    +  +    PI + E +V   +   +E+      +W+LDTGATN
Sbjct: 521  APLYPSPPRSCSLSTPASSTSSPQAPIHIHERKVLLHLSSEEEKEAVAPCRWVLDTGATN 580

Query: 205  HMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFVSKGGEHRKLTDVYFIPRLKAN 264
            HMTG+R  FSELDSG+ GTVKFGDGSVV IEG+GT+LF  + GEHR+L  VY+IPRL  N
Sbjct: 581  HMTGSRHVFSELDSGVTGTVKFGDGSVVNIEGKGTVLFALRSGEHRRLDGVYYIPRLMTN 640

Query: 265  LVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILELEIDQPVSLSAKTEE 324
            +VSLGQ+DE G  + IE G+L++ D QRRLL                        AK   
Sbjct: 641  IVSLGQMDEEGLKVVIEEGVLRLFDLQRRLL------------------------AKRGS 700

Query: 325  VSWRWHARYGHLNFPALEKLQKKELVHGLPEIKGVNKLCDGCLIGKQRRTPFPSRTAYRA 384
             +WRWH RYGHLNF AL KL+++E+V GLP I  V+++C+ C++ KQ+R PFP    YRA
Sbjct: 701  ATWRWHERYGHLNFQALRKLEREEMVRGLPSIDRVDQVCEDCILAKQKRAPFPQAAKYRA 760

Query: 385  DEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAKSEAAEAIKRIKARAE 444
             E LELVHGD+CGPI P TP G + FLLLVDD SRFMWLTLL++K++A   I   +AR E
Sbjct: 761  QEELELVHGDLCGPISPPTPTGNAYFLLLVDDMSRFMWLTLLRSKADAPSTIMLFQARVE 820

Query: 445  AECEKKMRVLRTDRGGEFTSASFNKYCDEIGIQRHLTAPYSPQQNGVVERRNQTIVGTAR 504
             EC KK++VLRTD GGEFTS  F ++C   GIQRH +APY+PQQNGVVERRNQ +V TAR
Sbjct: 821  RECGKKLKVLRTDNGGEFTSVQFGEHCAGEGIQRHFSAPYTPQQNGVVERRNQMVVSTAR 880

Query: 505  SLLVTAGMPGRFWGEAVMTAVYLLNRSPTRSLDGKTPYEAWYNKKPTVHHFRVFGCVAYM 564
            S+L   GMPG FWGEAV TAV+LLNR+PT +L+G+TPY+AWY KKP VH  +VFGCVAY+
Sbjct: 881  SILRARGMPGHFWGEAVHTAVFLLNRAPTAALNGRTPYQAWYGKKPAVHFLKVFGCVAYI 940

Query: 565  KVTRPHLAKLDPGGLKVVFIGYEPGSKAYRLYDPVGGRAHVSRDVVFDESTFWQWNDVIE 624
            K  RPHL+KL+  G KVVFIGY+ GSKAYR YDPV  R HVSRD VF+E     W   I+
Sbjct: 941  KRPRPHLSKLEDRGQKVVFIGYQDGSKAYRFYDPVTERVHVSRDAVFNEGARLDWGGAID 1000

Query: 625  T-DRNPNQFTVEY------------------------LVTEPEEGGAQHQET-------- 684
            T D +P     EY                        L   P         T        
Sbjct: 1001 TVDMHPFTVAEEYELRHQQVEGSALEPISPEARTPAPLALSPRSASTPSTPTPHTVSPTA 1060

Query: 685  --------SPPPAGAPPEPVEFATPRTADSTLDADHDTDLEARYRRMDDLVGGGEPPGLA 744
                    SP    AP   ++FATP + D + DAD   +L  RYR +D++   G  PGL 
Sbjct: 1061 PSTSATASSPSTPQAPRTHIKFATPLSTDPSFDADDVGEL--RYRTLDNIHSVGAAPGLV 1120

Query: 745  ARELEEVAELHAVSADEPNTFAEAEKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIG 804
              + +E AELH VS +EP T  EA+ +P W  AM+EE+ SI +N+TWSL ++P GHRAIG
Sbjct: 1121 HHD-DEHAELHVVSVEEPRTLKEADGDPNWVAAMEEELASIRDNKTWSLAELPHGHRAIG 1180

Query: 805  LKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEEVFAPVARLESVRFLLAIAAHHSW 864
            LKWV+K+KR+E   +VK+KARLVAKGYVQ+ GVDF+EVFAPVAR ESVR LLAIAAH+ W
Sbjct: 1181 LKWVYKVKRDENDNIVKYKARLVAKGYVQQPGVDFDEVFAPVARQESVRLLLAIAAHYGW 1240

Query: 865  EVHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALYGLRQAPRAWNAKLDS 924
             VHHMDVKSAFLNGEL+E VYV+QPPGF+D  +  KVLRLHKALYGLRQAPRAWN KLD+
Sbjct: 1241 GVHHMDVKSAFLNGELQEEVYVQQPPGFVDERHKYKVLRLHKALYGLRQAPRAWNQKLDA 1300

Query: 925  TLLSLNFKRCASEHGMYTYGHGKKRLIVGVYVDDLIITGGDVGVLGRFKKEMSKNFEMSD 984
             LL+L F RC +EHGMYT G G+ RLIVGVYVDDLIITGGD G + +FK +M K F+MSD
Sbjct: 1301 ELLALGFARCVNEHGMYTRGKGEARLIVGVYVDDLIITGGDAGAVAKFKVQMQKIFKMSD 1360

Query: 985  LGVLSYYLGIEVQQNSSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTT 1044
            LG+LSYYLG+EV Q + GI++ QSAYA K+L+  GL   N + TPME +L+L K GTT +
Sbjct: 1361 LGLLSYYLGLEVTQGAQGITLRQSAYATKVLEKAGLAGCNASATPMEPKLKLLKEGTTPS 1420

Query: 1045 VDSTNYRSIVGSLRYLVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGV 1104
            VD T YRS++GSLRYL NSRPDLAY VGY+SRFMEAPR+EHL AVKR+LRYVAGT  WG+
Sbjct: 1421 VDVTEYRSLIGSLRYLCNSRPDLAYPVGYLSRFMEAPRQEHLAAVKRVLRYVAGTLHWGL 1480

Query: 1105 RY-CAGSEKEKLKLVGYSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQKVVALSSCE 1159
             Y  +G  +   +L+GYSDSD+AGDV+DRKSTSG+I+FL+GG + WQS KQKVVALSSCE
Sbjct: 1481 HYHPSGKNEGAPQLLGYSDSDLAGDVNDRKSTSGLIFFLAGGPVAWQSAKQKVVALSSCE 1540

[Close]

BLAST of CmoCh11G007290 vs. NCBI nr
Match: CAE03692.2 (OSJNBb0026E15.10 [Oryza sativa Japonica Group])

HSP 1 Score: 1392.9 bits (3604), Expect = 0.0e+00
Identity = 713/1180 (60.42%), Postives = 877/1180 (74.32%), Query Frame = 0


Query: 4    GRTRG-------KDGNQKKESTNGR-PIQCSNCGKRGHLSRNCWSKLRNKEKAEKAQAHV 63
            GR RG       K+   K  +  GR P  C NCGKRGH +++C    R+K KA+  QA+V
Sbjct: 274  GRGRGKKDDGAPKEAQPKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQ--QAYV 333

Query: 64   AQSEEDEPALFMVTACVPNFDSKSDDDVEPKKELQLGVAKLAPT--GEPIQLEEERVFAQ 123
            AQ E++EPAL +        D        P   +    A  AP+  GE + + E +VFAQ
Sbjct: 334  AQEEDEEPALLLAKV---QLDPPRPRVAAPTNVVSPPSAPRAPSPIGE-LAVVEAKVFAQ 393

Query: 124  IGERDEQHEHQQWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFV 183
            + +  E H+   WILDTGATNHMTG+RSAF+ELD+ + GTV+FGDGSVV IEGR T+LF 
Sbjct: 394  LDDGGE-HDPAMWILDTGATNHMTGSRSAFAELDTAVTGTVRFGDGSVVRIEGRVTVLFS 453

Query: 184  SKGGEHRKLTDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTN 243
             + GEHR +  VY+IPRL AN+VSLGQLD +G  + I  G+L + D +  LL + RR+ +
Sbjct: 454  CRFGEHRGIAGVYYIPRLTANIVSLGQLDRSGSKVLIHHGILHVWDPRGHLLVRVRRSDD 513

Query: 244  RLYILELEIDQPVSLSAKTEEVSWRWHARYGHLNFPALEKLQKKELVHGLPEIKGVNKLC 303
             LY ++L+ID+PV L+A++ E +WRWHARYGHLNFPAL KL ++E+V GLP ++ V ++C
Sbjct: 514  CLYTIKLDIDRPVCLAARSAEPAWRWHARYGHLNFPALRKLAQQEMVRGLPLLQQVTQVC 573

Query: 304  DGCLIGKQRRTPFPSRTAYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWL 363
            DGCL+GKQRR  FP+++ YRADE LELVHGD+CGPI+PATP G   FLLLVDD SR+MWL
Sbjct: 574  DGCLLGKQRRAAFPTQSKYRADEHLELVHGDLCGPIEPATPAGNRYFLLLVDDMSRYMWL 633

Query: 364  TLLQAKSEAAEAIKRIKARAEAECEKKMRVLRTDRGGEFTSASFNKYCDEIGIQRHLTAP 423
            T++++K EAA AIK  +ARAE E  +K+R LR DRG EFTS  F +YC  +G+ R LTAP
Sbjct: 634  TMIRSKDEAANAIKHFQARAEVESGRKLRALRMDRGSEFTSIEFGEYCANLGVGRQLTAP 693

Query: 424  YSPQQNGVVERRNQTIVGTARSLLVTAGMPGRFWGEAVMTAVYLLNRSPTRSLDGKTPYE 483
            YSPQQNGVVERRNQTIV TARS++   G+PGRFWGEA+ TAV+LLNRSPT+SLD +TPYE
Sbjct: 694  YSPQQNGVVERRNQTIVATARSMMKAKGVPGRFWGEAMSTAVFLLNRSPTKSLDNQTPYE 753

Query: 484  AWYNKKPTVHHFRVFGCVAYMKVTRPHLAKLDPGGLKVVFIGYEPGSKAYRLYDPVGGRA 543
            AWY + P VH  R FGCV ++K+T+P L KLD     +V +GYE GSKAYRLYDPV  R 
Sbjct: 754  AWYGQWPAVHFLRTFGCVGHVKITKPGLKKLDDRSAPMVLLGYEQGSKAYRLYDPVSERV 813

Query: 544  HVSRDVVFDESTFWQWNDVIETDRNP--NQFTVEYLVT--------------EPEEGGAQ 603
            HVSRDVVFDE   W W  V   D  P    FTVE +VT               P      
Sbjct: 814  HVSRDVVFDEDIAWDWGPV-TPDGAPQLEPFTVEQVVTTTIGTAPASSPTPPSPPSPAPS 873

Query: 604  HQETSPPPAGAPPEPVEFATPRTADSTLDADHDTDLEARYRRMDDLVGGGEPPGLAAREL 663
               T  PP+   PE VEF TP T DS LDAD D D+  RYR +D+L+G   PPG A R L
Sbjct: 874  APTTPAPPSPPSPEAVEFVTPPTQDSILDADADDDVVPRYRLVDNLLGNASPPGHAPRVL 933

Query: 664  EEVAELHAVSADEPNTFAEAEKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIGLKWV 723
            E++ ELH VSADEP + AEAE +P WR AMQ+E+ +I +N TWSL D+P GHRAIGLKWV
Sbjct: 934  EQL-ELHVVSADEPASLAEAEADPSWRGAMQDELNAIVDNDTWSLTDLPHGHRAIGLKWV 993

Query: 724  FKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEEVFAPVARLESVRFLLAIAAHHSWEVHH 783
            +KLKR+E+G +V++KARLVAKGYVQ+QGVDF+EVFA VARLESVR LLA+AAH  W+VHH
Sbjct: 994  YKLKRDEQGAIVRYKARLVAKGYVQRQGVDFDEVFALVARLESVRLLLAVAAHQGWQVHH 1053

Query: 784  MDVKSAFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALYGLRQAPRAWNAKLDSTLLS 843
            MDVKSAFLNGEL E VYV QPPGF+D+++ NKV RLHKALYGLRQAPRAWNAKLDS+LLS
Sbjct: 1054 MDVKSAFLNGELLEEVYVSQPPGFVDDNHKNKVYRLHKALYGLRQAPRAWNAKLDSSLLS 1113

Query: 844  LNFKRCASEHGMYTYGHGKKRLIVGVYVDDLIITGGDVGVLGRFKKEMSKNFEMSDLGVL 903
            L F R +SEHG+YT   G +RL+VGVYVDDLIITG     +  FK EM K F+MSDLG L
Sbjct: 1114 LGFHRSSSEHGVYTRTRGGRRLMVGVYVDDLIITGDHDDEIRSFKGEMMKLFKMSDLGAL 1173

Query: 904  SYYLGIEVQQNSSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDST 963
             YYLGIEV Q+S GI++ Q+AYA K+L+  GL D NP +TPME RL+LRK      VD+T
Sbjct: 1174 RYYLGIEVTQDSDGITLGQAAYAGKILEKAGLKDCNPCQTPMEVRLKLRKGSDFPLVDAT 1233

Query: 964  NYRSIVGSLRYLVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCA 1023
             YRS+VGSLRYLVN+RPDLA+SVGYVSRFME+PRE+HL AV+RILRYVAGTR WG+R+  
Sbjct: 1234 LYRSLVGSLRYLVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRCWGIRFGP 1293

Query: 1024 GSEKEKLKLVGYSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQKVVALSSCEAEYIA 1083
            G+      LVGYSDSD+AGD D+RKSTSG I+F++GG + WQS+KQKVVALSSCEAEYIA
Sbjct: 1294 GARCALPMLVGYSDSDLAGDPDERKSTSGQIFFINGGPVTWQSSKQKVVALSSCEAEYIA 1353

Query: 1084 ASMAATQGIWLARLMEELIGRESDSPMLYIDNKATISLIKNPVLHDRSKHIETRFHYIRE 1143
            A+ A  QG+WLARL+ E++G E  +P+L +DN++TISLIKNPV HDRSKHI+ ++HYIRE
Sbjct: 1354 AAAATCQGVWLARLLAEVLGDEITAPLLKVDNQSTISLIKNPVHHDRSKHIDVKYHYIRE 1413

Query: 1144 CADRGLIKIDFIRTEEQLGDIFTKSLARVKFEELRSKIGV 1158
            CA++ LI++ F+ T EQLGDIFTKSL R +F+ELRSKIGV
Sbjct: 1414 CAEKKLIEMMFVGTAEQLGDIFTKSLGRTRFQELRSKIGV 1440

[Close]

BLAST of CmoCh11G007290 vs. NCBI nr
Match: CAH66352.1 (OSIGBa0135C09.3 [Oryza sativa])

HSP 1 Score: 1357.0 bits (3511), Expect = 0.0e+00
Identity = 699/1180 (59.24%), Postives = 860/1180 (72.88%), Query Frame = 0


Query: 4    GRTRG-------KDGNQKKESTNGR-PIQCSNCGKRGHLSRNCWSKLRNKEKAEKAQAHV 63
            GR RG       K+   K  +  GR P  C NCGKRGH +++C    R+K KA+  QA+V
Sbjct: 207  GRGRGKKDDGAPKEAQSKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQ--QAYV 266

Query: 64   AQSEEDEPALFMVTACVPNFDSKSDDDVEPKKELQLGVAKLAPT--GEPIQLEEERVFAQ 123
            AQ E++EPAL +        D        P   +    A  AP+  GE + + E +VFAQ
Sbjct: 267  AQEEDEEPALLLAKV---QLDPPRPRVAAPTNVVSPPSAPRAPSPMGE-LAVVEAKVFAQ 326

Query: 124  IGERDEQHEHQQWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFV 183
            + +  E H+   WILDTGATNHMTG+RSAF++LD+ + GTV+FGDGSVV IEGRGT+LF 
Sbjct: 327  LDDGGE-HDPAMWILDTGATNHMTGSRSAFAKLDTAVTGTVRFGDGSVVRIEGRGTVLFS 386

Query: 184  SKGGEHRKLTDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTN 243
             + GEHR +  VY+IPRL AN+VSLGQLD +G  + I  G+L++ D +  LL + RR+ +
Sbjct: 387  CRFGEHRGIAGVYYIPRLTANIVSLGQLDRSGSKVLIHHGVLRVWDPRGHLLVRVRRSDD 446

Query: 244  RLYILELEIDQPVSLSAKTEEVSWRWHARYGHLNFPALEKLQKKELVHGLPEIKGVNKLC 303
             LY ++L ID+PV L+A++ + +WRWHARYGHLNFP+L KL ++E+V GLP ++ V ++C
Sbjct: 447  CLYTIKLNIDRPVYLAARSAKPAWRWHARYGHLNFPSLRKLAQQEMVRGLPLLQQVTQVC 506

Query: 304  DGCLIGKQRRTPFPSRTAYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWL 363
            DGCL+GKQRR  FP+++ YRADE LELVHGD+CGPI+PATP G   FLLLVDD SR+MWL
Sbjct: 507  DGCLLGKQRRAAFPTQSKYRADEHLELVHGDLCGPIEPATPAGNRYFLLLVDDMSRYMWL 566

Query: 364  TLLQAKSEAAEAIKRIKARAEAECEKKMRVLRTDRGGEFTSASFNKYCDEIGIQRHLTAP 423
            TL+++K EAA AIK  +A AE E  +K+R LRTDRGGEFTS  F +YC  + + R LTAP
Sbjct: 567  TLIRSKDEAANAIKHFQAHAEVESGRKLRALRTDRGGEFTSIEFGEYCANLRVGRQLTAP 626

Query: 424  YSPQQNGVVERRNQTIVGTARSLLVTAGMPGRFWGEAVMTAVYLLNRSPTRSLDGKTPYE 483
            YSPQQNGVVERRNQTIV TARS++   G+PGRFWGEA+ TAV+LLNRSPT+SLD +TPYE
Sbjct: 627  YSPQQNGVVERRNQTIVATARSMMKAKGVPGRFWGEAMSTAVFLLNRSPTKSLDNQTPYE 686

Query: 484  AWYNKKPTVHHFRVFGCVAYMKVTRPHLAKLDPGGLKVVFIGYEPGSKAYRLYDPVGGRA 543
            AWY ++P VH  R FGCV ++K+T+P L KLD     +V +GYE GSKAYRLYDPV  R 
Sbjct: 687  AWYGQRPAVHFLRTFGCVGHVKITKPGLKKLDDRSAPMVLLGYEQGSKAYRLYDPVSERV 746

Query: 544  HVSRDVVFDESTFWQWNDVIETDRNP--NQFTVEYLVT--------------EPEEGGAQ 603
            HVSRDVVFDE   W W   +  D  P    FTVE +VT               P      
Sbjct: 747  HVSRDVVFDEDAAWDWGP-LTPDGAPQLEPFTVEQVVTTTIGTAPASSLTPPSPPSPAPS 806

Query: 604  HQETSPPPAGAPPEPVEFATPRTADSTLDADHDTDLEARYRRMDDLVGGGEPPGLAAREL 663
               T  PP+   PE VEF TP T DS LDAD D D+  RY  +D+L+G   PPG A R L
Sbjct: 807  APTTPAPPSPPSPEAVEFVTPPTQDSILDADADDDVVPRYHLVDNLLGNASPPGHAPRVL 866

Query: 664  EEVAELHAVSADEPNTFAEAEKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIGLKWV 723
            E++ ELH VSADEP + AEAE +P WR AMQ+E+ +I +N TWSL D+P GHRAIGLKW 
Sbjct: 867  EQL-ELHVVSADEPASLAEAEADPNWRGAMQDELNAIVDNDTWSLTDLPHGHRAIGLKW- 926

Query: 724  FKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEEVFAPVARLESVRFLLAIAAHHSWEVHH 783
                           ARLVAKGYVQ+QGVDF+EVFAPVARLE VR LLAIAAH  W+VHH
Sbjct: 927  ---------------ARLVAKGYVQRQGVDFDEVFAPVARLELVRLLLAIAAHQGWQVHH 986

Query: 784  MDVKSAFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALYGLRQAPRAWNAKLDSTLLS 843
            MDVKSAFLNGEL E VYV QPPGF+D+++ NKV RLHKALYGLRQAPRAWN KLDS+LLS
Sbjct: 987  MDVKSAFLNGELLEEVYVSQPPGFVDDNHKNKVYRLHKALYGLRQAPRAWNTKLDSSLLS 1046

Query: 844  LNFKRCASEHGMYTYGHGKKRLIVGVYVDDLIITGGDVGVLGRFKKEMSKNFEMSDLGVL 903
            L F R +SEHG+YT   G +RL VGVYVDDLIITG     +  FK EM K F+MSDLG L
Sbjct: 1047 LGFHRSSSEHGVYTRTRGGRRLTVGVYVDDLIITGDHDDEIRSFKGEMMKLFKMSDLGAL 1106

Query: 904  SYYLGIEVQQNSSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDST 963
             YYLGIEV Q+S GI++ Q+AYA K+L+  GL D NP +TPME RL+LRK      VD+T
Sbjct: 1107 RYYLGIEVTQDSDGITLGQAAYAGKILEKAGLKDCNPCQTPMEVRLKLRKGSDFPLVDAT 1166

Query: 964  NYRSIVGSLRYLVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCA 1023
             YRS+VGSLRYLVN+RPDLA+SVGYVSRFME+PRE+HL AV+RILRYVAGTR WG+R+  
Sbjct: 1167 LYRSLVGSLRYLVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRCWGIRFGP 1226

Query: 1024 GSEKEKLKLVGYSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQKVVALSSCEAEYIA 1083
            G+      LVGYSDSD+AGD D+RKSTSG I+F++GG + WQS+K+KVVALSSCEAEYIA
Sbjct: 1227 GARCALPMLVGYSDSDLAGDPDERKSTSGQIFFINGGPVTWQSSKKKVVALSSCEAEYIA 1286

Query: 1084 ASMAATQGIWLARLMEELIGRESDSPMLYIDNKATISLIKNPVLHDRSKHIETRFHYIRE 1143
            A+    QG+WLARL+ E++G E  +P+L +DN++TISLIKNPV HDRSKHI+ ++HYIRE
Sbjct: 1287 AAATTCQGVWLARLLAEVLGDEIAAPLLKVDNQSTISLIKNPVHHDRSKHIDVKYHYIRE 1346

Query: 1144 CADRGLIKIDFIRTEEQLGDIFTKSLARVKFEELRSKIGV 1158
            CA++ LI++ F+ T EQLGDIFTKSL R +F+ELRSKIGV
Sbjct: 1347 CAEKKLIEMMFVGTAEQLGDIFTKSLGRTRFQELRSKIGV 1357

[Close]

BLAST of CmoCh11G007290 vs. NCBI nr
Match: BAF23632.1 (Os08g0389500 [Oryza sativa Japonica Group])

HSP 1 Score: 1315.8 bits (3404), Expect = 0.0e+00
Identity = 674/1183 (56.97%), Postives = 843/1183 (71.26%), Query Frame = 0


Query: 10   DGNQKKESTNGRPIQCSNCGKRGHLSRNCWSKLRNKEKAEKAQAHVAQSEEDEPALFMVT 69
            DG+ + + T+    +C  CGK+GH ++ C S+LR+       +AH+AQ EE+E  + MV 
Sbjct: 295  DGSNQPKKTD----KCRYCGKKGHWAKECRSRLRD-------EAHLAQGEEEEEPMLMVA 354

Query: 70   ACVPNFDSKSDDDVEPKKELQLGVAKLAPTGEPIQLEEERVFAQIGERDEQHEHQQWILD 129
                N  S S     P +   L      P  E I L+E ++F Q+G  +   E  +WILD
Sbjct: 355  TAQVNAISSS----SPPRFTSL------PALEQIHLDESKLFVQLG-GEHGGEATRWILD 414

Query: 130  TGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFVSKGGEHRKLTDVYFIP 189
            TGATNHMTG RSAFSEL++GIRGTVKFGDGSVV IEGRGT+LF  K GEH+ L  VY IP
Sbjct: 415  TGATNHMTGTRSAFSELNTGIRGTVKFGDGSVVGIEGRGTVLFKCKDGEHQALEGVYHIP 474

Query: 190  RLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILELEIDQPVSLS 249
            RL  N+VSLGQLDE     S E G+LKI + QRRLL +  R+ NRLY+++L I +PV L+
Sbjct: 475  RLTTNIVSLGQLDEEKFKWSCEDGVLKIWNKQRRLLAKVVRSPNRLYVVKLNIGRPVCLA 534

Query: 250  AKTEEVSWRWHARYGHLNFPALEKLQKKELVHGLPEIKGVNKLCDGCLIGKQRRTPFPSR 309
            A+  +++WRWHAR+GHLNF ALEKL +  +V GLP I  V+++CD CL+GKQRR PFPS+
Sbjct: 535  AQGGDIAWRWHARFGHLNFRALEKLGRAVMVRGLPLINHVDQVCDSCLVGKQRRLPFPSK 594

Query: 310  TAYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAKSEAAEAIKRI 369
              YRA E LELVHGDICGP+ PATP G  LFLLLVDD SR+MWL LL +K +A+ AIKR 
Sbjct: 595  AKYRAKEKLELVHGDICGPVTPATPSGNKLFLLLVDDLSRYMWLILLSSKDQASVAIKRF 654

Query: 370  KARAEAECEKKMRVLRTDRGGEFTSASFNKYCDEIGIQRHLTAPYSPQQNGVVERRNQTI 429
             A AEAE  +K+R LRTDRGGEFT+ +F +YC E GIQRHLTAPY+PQQNGVVERRNQT+
Sbjct: 655  LACAEAEAGRKLRTLRTDRGGEFTAHAFAEYCAEHGIQRHLTAPYTPQQNGVVERRNQTV 714

Query: 430  VGTARSLLVTAGMPGRFWGEAVMTAVYLLNRSPTRSLDGKTPYEAWYNKKPTVHHFRVFG 489
            +G ARS++    +PG FWGEAV TAV+LLNR+PT+ +DGKTP+E W+  KP VH  R FG
Sbjct: 715  MGMARSMMKAKSLPGWFWGEAVNTAVFLLNRAPTQCVDGKTPFEVWHGVKPPVHFLRTFG 774

Query: 490  CVAYMKVTRPHLAKLDPGGLKVVFIGYEPGSKAYRLYDPVGGRAHVSRDVVFDESTFWQW 549
            CVA++K     LAKLD   + +VF+GYE G+KAYR Y+PV  R HVSRD VF+E   W+W
Sbjct: 775  CVAHVKNGGQRLAKLDDRSMPMVFVGYEAGTKAYRFYNPVSRRVHVSRDAVFEEERSWEW 834

Query: 550  NDVIETDRNPNQ----FTVEYLVTEPE-EGG-------AQHQETSPP------------- 609
                E    P+     F VE+L T P  +GG       A  + TS P             
Sbjct: 835  G--AEKGAGPDDDIEPFVVEHLATGPTGQGGPVAATPTATQRSTSAPAPMAPPATPSQAG 894

Query: 610  ----------PAGAPPEPVEFATPRTADSTLDADHDTDLEARYRRMDDLVGGGEPPGLAA 669
                      PA A    +EFA+P   D  LD DHD D+  R+R +D+L+G   PPGLA 
Sbjct: 895  TPTHGAGPRTPASASSPAIEFASPPQGDLDLDNDHDDDVPLRFRTVDNLLGASSPPGLAE 954

Query: 670  RELEEVAELHAVSADEPNTFAEAEKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIGL 729
            RE+ E   L     DEP T  EA++   WR+AM EEM SI  N+TWSL ++P G RAIGL
Sbjct: 955  REVTE--GLMVAIEDEPATAEEAKQVKEWREAMIEEMASIEHNKTWSLVELPAGQRAIGL 1014

Query: 730  KWVFKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEEVFAPVARLESVRFLLAIAAHHSWE 789
            KWVFK+K++E G + KHKARLVAKGYVQ+QG+D+EEVFAPVAR+ESVR LLA+AAH SW 
Sbjct: 1015 KWVFKIKKDEHGNITKHKARLVAKGYVQRQGIDYEEVFAPVARIESVRVLLAVAAHRSWS 1074

Query: 790  VHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALYGLRQAPRAWNAKLDST 849
            VHHMDVKSAFLNG+L E VYV+QPPGF+   +  KVL+LHKALYGL+QAPRAWN+KLDS+
Sbjct: 1075 VHHMDVKSAFLNGDLAEEVYVQQPPGFVAAGHERKVLKLHKALYGLKQAPRAWNSKLDSS 1134

Query: 850  LLSLNFKRCASEHGMYTYGHGKKRLIVGVYVDDLIITGGDVGVLGRFKKEMSKNFEMSDL 909
            LL L F R   EHG+YT   G+KRL+VG+YVDDLIITGG   V+  FK EM   F MSDL
Sbjct: 1135 LLMLGFARSECEHGLYTRSDGEKRLVVGIYVDDLIITGGSTEVINTFKTEMKTLFRMSDL 1194

Query: 910  GVLSYYLGIEVQQNSSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTV 969
            GVLSYYLGIEV+Q   GI + Q+AYA+K+L+  G+   NP  TPMEARL+L K  T+  V
Sbjct: 1195 GVLSYYLGIEVRQGRRGIELLQAAYAKKILEKAGMGTCNPCATPMEARLKLSKQSTSPAV 1254

Query: 970  DSTNYRSIVGSLRYLVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVR 1029
            D+T YRS++GSLRYL+N+RPD+A++VGY+SRFME PR+EHL A+K +LRYVAGT  +G+ 
Sbjct: 1255 DATEYRSLIGSLRYLMNTRPDMAFAVGYLSRFMENPRQEHLAAMKHLLRYVAGTIDYGLV 1314

Query: 1030 YCAGSEKEKLKLVGYSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQKVVALSSCEAE 1089
            Y +G    +  LVGYSDSDMAGD+DDRKSTSG+IYFL G  + WQS KQ+VVALSSCEAE
Sbjct: 1315 YTSGD--TEFNLVGYSDSDMAGDIDDRKSTSGIIYFLGGNPVAWQSQKQRVVALSSCEAE 1374

Query: 1090 YIAASMAATQGIWLARLMEELIGRESDSPMLYIDNKATISLIKNPVLHDRSKHIETRFHY 1149
            YIA + AA QG+WL RL+++++G     P L +DN++ I+L KNPVLHDRSKHI+T+FH+
Sbjct: 1375 YIAGAAAACQGVWLRRLLQDVVGVSGPPPQLKMDNQSAIALSKNPVLHDRSKHIDTKFHF 1434

Query: 1150 IRECADRGLIKIDFIRTEEQLGDIFTKSLARVKFEELRSKIGV 1158
            +REC D G +++ F+ T+ QL DI TK+L R KF+ELR  IGV
Sbjct: 1435 LRECVDSGAVRLAFVSTQAQLADIMTKALGRSKFQELRELIGV 1449

[Close]

BLAST of CmoCh11G007290 vs. NCBI nr
Match: BAF21410.1 (Os07g0434200, partial [Oryza sativa Japonica Group])

HSP 1 Score: 1275.8 bits (3300), Expect = 0.0e+00
Identity = 661/1174 (56.30%), Postives = 824/1174 (70.19%), Query Frame = 0


Query: 4    GRTRGKDGNQKKESTNGRPIQCSNCGKRGHLSRNCWSKLRNKEKAEKAQAHVAQSEEDEP 63
            G+ R   G         +  +C NCGK GH +++C    R+K K E  QAHV Q EEDEP
Sbjct: 52   GQGRNGSGGGDSAGPARKTDKCHNCGKLGHWAKDC----RSKPKQE--QAHVVQ-EEDEP 111

Query: 64   ALFMVT-ACVPNFDSKSDDDVEPKKELQLGVAKLAPTGEPIQLEEERVFAQIGERDEQHE 123
             L ++T  C+   +      V P            P  + ++L E++VFA + +  + H+
Sbjct: 112  TLMLMTGGCIDVVEETGAPCVTPAPPAP------RPRLDVVELVEQKVFAALDDATD-HD 171

Query: 124  HQQWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFVSKGGEHRKL 183
            +++WILDTGA+NHMTG+R+AFS++D+ + G V+ GDGS+V I GR TILF  K GEH  L
Sbjct: 172  NKRWILDTGASNHMTGSRAAFSDIDTNVTGNVRLGDGSLVRIGGRRTILFACKNGEHHML 231

Query: 184  TDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILELEI 243
               Y++P L AN++S+GQLDETG  + +E G++++ D Q RLL +  RT  RLY+L++ +
Sbjct: 232  HKAYYLPCLAANIISVGQLDETGFKVLVEDGVMRVWDEQHRLLARITRTPGRLYVLDINL 291

Query: 244  DQPVSLSAKTEEVSWRWHARYGHLNFPALEKLQKKELVHGLPEIKGVNKLCDGCLIGKQR 303
             +PV L A+  E +WRWHAR+GH+NF AL K+ ++ LV GLP +  V ++C+ CL GKQR
Sbjct: 292  ARPVYLMARAGEDAWRWHARFGHVNFTALRKMGREALVRGLPVLSQVEQVCEACLAGKQR 351

Query: 304  RTPFPSRTAYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAKSEA 363
            R PFP +  +RA EPL L+HGD+CGP+ PATP G   F LLVDD SR+MWL LL  K  A
Sbjct: 352  RAPFPQQALHRATEPLALLHGDLCGPVMPATPSGNRYFPLLVDDYSRYMWLVLLATKDAA 411

Query: 364  AEAIKRIKARAEAECEKKMRVLRTDRGGEFTSASFNKYCDEIGIQRHLTAPYSPQQNGVV 423
             +A+KR++A AE +  +K+R LRTDRGGEFT   F +YC E+G++R LTAPYSPQQNGVV
Sbjct: 412  PDAMKRVQAAAERKSGRKLRALRTDRGGEFTVGHFTEYCAELGLRRELTAPYSPQQNGVV 471

Query: 424  ERRNQTIVGTARSLLVTAGMPGRFWGEAVMTAVYLLNRSPTRSLDGKTPYEAWYNKKPTV 483
            ERRNQ++V TARS+L   G+PG FWGEAV TAVYLLNR  ++S+DGKTPYE W    P V
Sbjct: 472  ERRNQSVVSTARSMLKAKGLPGMFWGEAVNTAVYLLNRCSSKSIDGKTPYELWNGVTPAV 531

Query: 484  HHFRVFGCVAYMKVTRPHLAKLDPGGLKVVFIGYEPGSKAYRLYDPVGGRAHVSRDVVFD 543
            HH R FGCVA++KVT P   KLD     ++F+GYE GSKAYR+YDP   R HVSRDVVFD
Sbjct: 532  HHLRTFGCVAHVKVTAP-TKKLDDRSRPMIFVGYELGSKAYRVYDPATRRVHVSRDVVFD 591

Query: 544  ESTFWQWNDVIETDRNPNQFTVEYLV-----------TEPEEGGAQHQETSPPPAGAPP- 603
            E   W W+    T+ + + FT+EY             T  E GGA     SP     P  
Sbjct: 592  EEAQWNWDGEAATNVD-SDFTIEYTTVYHPATATPTQTGTEHGGAPASPRSPASGSTPTT 651

Query: 604  ------EPVEFAT-PRTADSTLDADHDTDLEARYRRMDDLVGGGEPPGLAARELEEVAEL 663
                   PVEF + P   +  LDADHD D   R+RR+DD++G   PPG A REL E  EL
Sbjct: 652  PPVAEVSPVEFVSPPPDVEDDLDADHD-DAPLRFRRIDDVLGPATPPGQAVRELSE--EL 711

Query: 664  HAVSADEPNTFAEAEKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRN 723
             AV+A+EP +FAEAE+  CWR+AM EEM SI  N+TW L D     R IGLKWV+K K++
Sbjct: 712  FAVTAEEPASFAEAEQLSCWRQAMIEEMRSIEANKTWRLVDPLARQRPIGLKWVYKAKKD 771

Query: 724  EKGEVVKHKARLVAKGYVQKQGVDFEEVFAPVARLESVRFLLAIAAHHSWEVHHMDVKSA 783
              G + K+KARLVAKGYVQ+QG+DF+EVFAPVARLESVR LLA AA   W VHHMDVKSA
Sbjct: 772  AAGNITKYKARLVAKGYVQRQGIDFDEVFAPVARLESVRLLLAHAACEGWAVHHMDVKSA 831

Query: 784  FLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALYGLRQAPRAWNAKLDSTLLSLNFKRC 843
            FLNGEL E VYV QPPGF+ +   +KVLRL KALYGLRQAPRAW +KLD++LLSL F R 
Sbjct: 832  FLNGELLEEVYVAQPPGFVVDGQEHKVLRLDKALYGLRQAPRAWYSKLDASLLSLGFHRS 891

Query: 844  ASEHGMYTYGHGKKRLIVGVYVDDLIITGGDVGVLGRFKKEMSKNFEMSDLGVLSYYLGI 903
             SEH +Y  G G++RL+VGVYVDDLIITGG+ G L +FK+EM   F+MSDLG+L YYLG+
Sbjct: 892  DSEHAVYMRGTGEQRLVVGVYVDDLIITGGNPGELKQFKEEMKGTFQMSDLGLLQYYLGL 951

Query: 904  EVQQNSSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIV 963
            EV Q   GI++ Q AYA K+L T G+V SNP+ TPME RL+L K     +VD+T+YR IV
Sbjct: 952  EVNQTEDGITVNQRAYAEKILQTAGMVASNPSLTPMETRLKLSKMSNAPSVDATDYRWIV 1011

Query: 964  GSLRYLVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSEKEK 1023
            GSLRYLVNSRPDLAYSVGYVSRFME P  EHL AVKR+LRYVAG+ G+G  Y     K+ 
Sbjct: 1012 GSLRYLVNSRPDLAYSVGYVSRFMEKPTTEHLAAVKRVLRYVAGSIGYGCHY---KRKKD 1071

Query: 1024 LKLVGYSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQKVVALSSCEAEYIAASMAAT 1083
              LVGYSDSD+AGDVD RKSTSG+ +FL    I WQS KQKVVALSSCEAEYIAA+ AA 
Sbjct: 1072 ASLVGYSDSDLAGDVDTRKSTSGVFFFLGDNLITWQSQKQKVVALSSCEAEYIAATTAAC 1131

Query: 1084 QGIWLARLMEELIGRESDSPMLYIDNKATISLIKNPVLHDRSKHIETRFHYIRECADRGL 1143
            QG+WLARL+ EL G E+D+  L IDN++ I L KNPV HDRSKHI+TR+HYIREC + G 
Sbjct: 1132 QGVWLARLLAELQGEEADAVTLRIDNQSAIMLSKNPVFHDRSKHIDTRYHYIRECIEEGR 1191

Query: 1144 IKIDFIRTEEQLGDIFTKSLARVKFEELRSKIGV 1158
            +K++FI T EQL DI TKSL R +F ELRS+IG+
Sbjct: 1192 VKVEFIGTNEQLADILTKSLGRDRFMELRSQIGL 1203

[Close]

BLAST of CmoCh11G007290 vs. NCBI nr
Match: AQA29583.1 (reverse transcriptase [Zea mays])

HSP 1 Score: 1268.8 bits (3282), Expect = 0.0e+00
Identity = 663/1246 (53.21%), Postives = 821/1246 (65.89%), Query Frame = 0


Query: 25   CSNCGKRGHLSRNCWSKLRNKEKAEKAQAHVAQSEEDEPALFM----------------- 84
            C NCGK GH +++C  K       +K  AHVA+++EDEPAL                   
Sbjct: 401  CHNCGKGGHWAKDCRGK-------KKVVAHVAEAQEDEPALMYLAVETEEIAPGPPPAPP 460

Query: 85   -----------------------------------------------VTACVPNFDSKSD 144
                                                           V A  P    ++ 
Sbjct: 461  GGPHVHRAPGGPHVRADCELGPLPAPPGKAVGSLPARAMAAQRRGTGVYAAGPRLQDRTP 520

Query: 145  DDVEPKK----ELQLGVAKLAPTGEPIQLEEERVFAQIGERDEQHEHQ--QWILDTGATN 204
              + P       L    +  +    PI + E +V   +   +E+      +W+LDTGATN
Sbjct: 521  APLYPSPPRSCSLSTPASSTSSPQAPIHIHERKVLLHLSSEEEKEAVAPCRWVLDTGATN 580

Query: 205  HMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFVSKGGEHRKLTDVYFIPRLKAN 264
            HMTG+R  FSELDSG+ GTVKFGDGSVV IEG+GT+LF  + GEHR+L  VY+IPRL  N
Sbjct: 581  HMTGSRHVFSELDSGVTGTVKFGDGSVVNIEGKGTVLFALRSGEHRRLDGVYYIPRLMTN 640

Query: 265  LVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILELEIDQPVSLSAKTEE 324
            +VSLGQ+DE G  + IE G+L++ D QRRLL                        AK   
Sbjct: 641  IVSLGQMDEEGLKVVIEEGVLRLFDLQRRLL------------------------AKRGS 700

Query: 325  VSWRWHARYGHLNFPALEKLQKKELVHGLPEIKGVNKLCDGCLIGKQRRTPFPSRTAYRA 384
             +WRWH RYGHLNF AL KL+++E+V GLP I  V+++C+ C++ KQ+R PFP    YRA
Sbjct: 701  ATWRWHERYGHLNFQALRKLEREEMVRGLPSIDRVDQVCEDCILAKQKRAPFPQAAKYRA 760

Query: 385  DEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAKSEAAEAIKRIKARAE 444
             E LELVHGD+CGPI P TP G + FLLLVDD SRFMWLTLL++K++A   I   +AR E
Sbjct: 761  QEELELVHGDLCGPISPPTPTGNAYFLLLVDDMSRFMWLTLLRSKADAPSTIMLFQARVE 820

Query: 445  AECEKKMRVLRTDRGGEFTSASFNKYCDEIGIQRHLTAPYSPQQNGVVERRNQTIVGTAR 504
             EC KK++VLRTD GGEFTS  F ++C   GIQRH +APY+PQQNGVVERRNQ +V TAR
Sbjct: 821  RECGKKLKVLRTDNGGEFTSVQFGEHCAGEGIQRHFSAPYTPQQNGVVERRNQMVVSTAR 880

Query: 505  SLLVTAGMPGRFWGEAVMTAVYLLNRSPTRSLDGKTPYEAWYNKKPTVHHFRVFGCVAYM 564
            S+L   GMPG FWGEAV TAV+LLNR+PT +L+G+TPY+AWY KKP VH  +VFGCVAY+
Sbjct: 881  SILRARGMPGHFWGEAVHTAVFLLNRAPTAALNGRTPYQAWYGKKPAVHFLKVFGCVAYI 940

Query: 565  KVTRPHLAKLDPGGLKVVFIGYEPGSKAYRLYDPVGGRAHVSRDVVFDESTFWQWNDVIE 624
            K  RPHL+KL+  G KVVFIGY+ GSKAYR YDPV  R HVSRD VF+E     W   I+
Sbjct: 941  KRPRPHLSKLEDRGQKVVFIGYQDGSKAYRFYDPVTERVHVSRDAVFNEGARLDWGGAID 1000

Query: 625  T-DRNPNQFTVEY------------------------LVTEPEEGGAQHQET-------- 684
            T D +P     EY                        L   P         T        
Sbjct: 1001 TVDMHPFTVAEEYELRHQQVEGSALEPISPEARTPAPLALSPRSASTPSTPTPHTVSPTA 1060

Query: 685  --------SPPPAGAPPEPVEFATPRTADSTLDADHDTDLEARYRRMDDLVGGGEPPGLA 744
                    SP    AP   ++FATP + D + DAD   +L  RYR +D++   G  PGL 
Sbjct: 1061 PSTSATASSPSTPQAPRTHIKFATPLSTDPSFDADDVGEL--RYRTLDNIHSVGAAPGLV 1120

Query: 745  ARELEEVAELHAVSADEPNTFAEAEKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIG 804
              + +E AELH VS +EP T  EA+ +P W  AM+EE+ SI +N+TWSL ++P GHRAIG
Sbjct: 1121 HHD-DEHAELHVVSVEEPRTLKEADGDPNWVAAMEEELASIRDNKTWSLAELPHGHRAIG 1180

Query: 805  LKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEEVFAPVARLESVRFLLAIAAHHSW 864
            LKWV+K+KR+E   +VK+KARLVAKGYVQ+ GVDF+EVFAPVAR ESVR LLAIAAH+ W
Sbjct: 1181 LKWVYKVKRDENDNIVKYKARLVAKGYVQQPGVDFDEVFAPVARQESVRLLLAIAAHYGW 1240

Query: 865  EVHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALYGLRQAPRAWNAKLDS 924
             VHHMDVKSAFLNGEL+E VYV+QPPGF+D  +  KVLRLHKALYGLRQAPRAWN KLD+
Sbjct: 1241 GVHHMDVKSAFLNGELQEEVYVQQPPGFVDERHKYKVLRLHKALYGLRQAPRAWNQKLDA 1300

Query: 925  TLLSLNFKRCASEHGMYTYGHGKKRLIVGVYVDDLIITGGDVGVLGRFKKEMSKNFEMSD 984
             LL+L F RC +EHGMYT G G+ RLIVGVYVDDLIITGGD G + +FK +M K F+MSD
Sbjct: 1301 ELLALGFARCVNEHGMYTRGKGEARLIVGVYVDDLIITGGDAGAVAKFKVQMQKIFKMSD 1360

Query: 985  LGVLSYYLGIEVQQNSSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTT 1044
            LG+LSYYLG+EV Q + GI++ QSAYA K+L+  GL   N + TPME +L+L K GTT +
Sbjct: 1361 LGLLSYYLGLEVTQGAQGITLRQSAYATKVLEKAGLAGCNASATPMEPKLKLLKEGTTPS 1420

Query: 1045 VDSTNYRSIVGSLRYLVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGV 1104
            VD T YRS++GSLRYL NSRPDLAY VGY+SRFMEAPR+EHL AVKR+LRYVAGT  WG+
Sbjct: 1421 VDVTEYRSLIGSLRYLCNSRPDLAYPVGYLSRFMEAPRQEHLAAVKRVLRYVAGTLHWGL 1480

Query: 1105 RY-CAGSEKEKLKLVGYSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQKVVALSSCE 1159
             Y  +G  +   +L+GYSDSD+AGDV+DRKSTSG+I+FL+GG + WQS KQKVVALSSCE
Sbjct: 1481 HYHPSGKNEGAPQLLGYSDSDLAGDVNDRKSTSGLIFFLAGGPVAWQSAKQKVVALSSCE 1540

[Close]

BLAST of CmoCh11G007290 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 365.9 bits (938), Expect = 1.3e-100
Identity = 208/544 (38.24%), Postives = 314/544 (57.72%), Query Frame = 0


Query: 648  ADEPNTFAEAEKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGE 707
            A EP+T+ EA++   W  AM +E+ ++    TW +  +PP  + IG KWV+K+K N  G 
Sbjct: 83   AKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGT 142

Query: 708  VVKHKARLVAKGYVQKQGVDFEEVFAPVARLESVRFLLAIAAHHSWEVHHMDVKSAFLNG 767
            + ++KARLVAKGY Q++G+DF E F+PV +L SV+ +LAI+A +++ +H +D+ +AFLNG
Sbjct: 143  IERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNG 202

Query: 768  ELKETVYVRQPPGFL----DNDNPNKVLRLHKALYGLRQAPRAWNAKLDSTLLSLNFKRC 827
            +L E +Y++ PPG+     D+  PN V  L K++YGL+QA R W  K   TL+   F + 
Sbjct: 203  DLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQS 262

Query: 828  ASEHGMYTYGHGKKRLIVGVYVDDLIITGGDVGVLGRFKKEMSKNFEMSDLGVLSYYLGI 887
             S+H  +        L V VYVDD+II   +   +   K ++   F++ DLG L Y+LG+
Sbjct: 263  HSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGL 322

Query: 888  EVQQNSSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIV 947
            E+ ++++GI+ICQ  YA  LLD TGL+   P+  PM+  +          VD+  YR ++
Sbjct: 323  EIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLI 382

Query: 948  GSLRYLVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSEKEK 1007
            G L YL  +R D++++V  +S+F EAPR  H  AV +IL Y+ GT G G+ Y   S + +
Sbjct: 383  GRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFY---SSQAE 442

Query: 1008 LKLVGYSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQKVVALSSCEAEYIAASMAAT 1067
            ++L  +SD+      D R+ST+G   FL    I W+S KQ+VV+ SS EAEY A S A  
Sbjct: 443  MQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATD 502

Query: 1068 QGIWLARLMEELIGRESDSPMLYIDNKATISLIKNPVLHDRSKHIETRFHYIRE-CADRG 1127
            + +WLA+   EL    S   +L+ DN A I +  N V H+R+KHIE+  H +RE    + 
Sbjct: 503  EMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQA 562

Query: 1128 LIKIDFIRTEEQLGDIFTKSLA---RVKFEELRSKIGV----QIISFVFFLSLCLSPSFK 1180
             +   F   +EQ  D FT+ L+   R     + S  G+     +I F+F        SFK
Sbjct: 563  TLSYSFQAYDEQ--DGFTEYLSPILRGTIMYIVSMFGLAGLEALICFIFLFLFSFLTSFK 621

[Close]

BLAST of CmoCh11G007290 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 150.6 bits (379), Expect = 8.4e-36
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 0


Query: 843  VYVDDLIITGGDVGVLGRFKKEMSKNFEMSDLGVLSYYLGIEVQQNSSGISICQSAYARK 902
            +YVDD+++TG    +L     ++S  F M DLG + Y+LGI+++ + SG+ + Q+ YA +
Sbjct: 5    LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 903  LLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRYLVNSRPDLAYSVGY 962
            +L+  G++D  P  TP+  +L      T    D +++RSIVG+L+YL  +RPD++Y+V  
Sbjct: 65   ILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 124

Query: 963  VSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSEKEKLKLVGYSDSDMAGDVDDRK 1022
            V + M  P       +KR+LRYV GT   G+      +  KL +  + DSD AG    R+
Sbjct: 125  VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYI---HKNSKLNVQAFCDSDWAGCTSTRR 184

Query: 1023 STSGMIYFLSGGAICWQSTKQKVVALSSCEAEYIAASMAATQGIW 1068
            ST+G   FL    I W + +Q  V+ SS E EY A ++ A +  W
Sbjct: 185  STTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CmoCh11G007290 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 87.4 bits (215), Expect = 8.7e-17
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 650 EPNTFAEAEKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVV 709
           EP +   A K+P W +AMQEE+ +++ N+TW L   P     +G KWVFK K +  G + 
Sbjct: 27  EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86

Query: 710 KHKARLVAKGYVQKQGVDFEEVFAPVARLESVRFLLAIA 749
           + KARLVAKG+ Q++G+ F E ++PV R  ++R +L +A
Sbjct: 87  RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of CmoCh11G007290 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-10
Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 426 NQTIVGTARSLLVTAGMPGRFWGEAVMTAVYLLNRSPTRSLDGKTPYEAWYNKKPTVHHF 485
           N+TI+   RS+L   G+P  F  +A  TAV+++N+ P+ +++   P E W+   PT  + 
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 486 RVFGCVAYMKVTRPHLAKLDPGGLKVVFIGYEPGS 521
           R FGCVAY+        KL P   K    G E GS
Sbjct: 62  RRFGCVAYIHCDE---GKLKPRAKK----GEEKGS 89

[Close]

BLAST of CmoCh11G007290 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 948  YLVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSEKEKLKLV 1007
            YL  +RPDL ++V  +S+F  A R   + AV ++L YV GT G G+ Y A S+   L+L 
Sbjct: 2    YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSD---LQLK 61

Query: 1008 GYSDSDMAGDVDDRKSTSG 1027
             ++DSD A   D R+S +G
Sbjct: 62   AFADSDWASCPDTRRSVTG 77

The following BLAST results are available for this feature:

BLAST of CmoCh11G007290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.9e-190	36.70	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.3e-154	29.61	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.8e-153	31.56	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.0e-147	30.95	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	9.0e-51	37.38	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of CmoCh11G007290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q7XPB1	0.0e+00	60.42	OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0026E...	[more]
A0B9X7	0.0e+00	59.24	OSIGBa0135C09.3 protein OS=Oryza sativa OX=4530 GN=OSIGBa0135C09.3 PE=4 SV=1	[more]
Q0J5Y3	0.0e+00	56.97	Os08g0389500 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0389500 PE...	[more]
Q0D6W3	0.0e+00	56.30	Os07g0434200 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os07...	[more]
A0A1P8YYM3	0.0e+00	53.21	Reverse transcriptase OS=Zea mays OX=4577 GN=FGENESH_28 PE=4 SV=1	[more]

BLAST of CmoCh11G007290 vs. NCBI nr


Match Name	E-value	Identity	Description
CAE03692.2	0.0e+00	60.42	OSJNBb0026E15.10 [Oryza sativa Japonica Group]	[more]
CAH66352.1	0.0e+00	59.24	OSIGBa0135C09.3 [Oryza sativa]	[more]
BAF23632.1	0.0e+00	56.97	Os08g0389500 [Oryza sativa Japonica Group]	[more]
BAF21410.1	0.0e+00	56.30	Os07g0434200, partial [Oryza sativa Japonica Group]	[more]
AQA29583.1	0.0e+00	53.21	reverse transcriptase [Zea mays]	[more]

BLAST of CmoCh11G007290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.3e-100	38.24	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	8.4e-36	36.00	DNA/RNA polymerases superfamily protein	[more]
ATMG00820.1	8.7e-17	42.42	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00710.1	2.1e-10	36.84	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
ATMG00240.1	1.1e-08	41.77	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 356..376
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 572..606
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 124..999
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 1007..1145 e-value: 3.22403E-68 score: 223.499
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 24..40 e-value: 6.6E-4 score: 29.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 25..38 score: 9.883478
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 677..920 e-value: 6.0E-98 score: 327.3
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 316..416 e-value: 7.6E-12 score: 45.4
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 313..479 score: 27.10285
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 234..301 e-value: 1.9E-15 score: 56.5
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 309..487 e-value: 5.1E-44 score: 151.9
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 316..488
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 677..1113
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 8..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G007290.1	CmoCh11G007290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding