CmoCh11G006270 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G006270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionTATA-binding protein-associated factor 2N
LocationCmo_Chr11: 3000920 .. 3005477 (-)
RNA-Seq ExpressionCmoCh11G006270
SyntenyCmoCh11G006270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCGAGGGATAAAGACTCTACGACTAACCACCAGCCGTTATTGAGCAGCCTGGTAGTACGGCCATCGAATAGTGACGGAGGTGGTGGCGGAGTCGGTGCAACCAGTGGCGGCCGAGTTGGTCGTGGAAGCGATTACGAGGCCGGTGAGGTTCCTCGTGACCCTCCACAATATTCTCGATTGGATCGATATTCAGCTGATTTGGGTTCGTTACTTCTGCACACCTTCGTTTTCGAACACTTTTCGAGCTATAGTTTGGATGTGAATAGGCGCATTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCGTGTGTGTGTTCTGTAAGTTTATCCCTGCGTTGAATTTCATCGCTTGCGACCTTAGGTTGAATTTATATGTATATTTTGGTAGGAAACATATTTTCAATGAAAGAATGAGAATTACGAATATAGGGAGGAAAGCCAGCCCGAGTCGATGGAGATTACAGAAAGTTCATCCATGAGGTCGAAATACGACTTAAACCATAATTGTCAAAAGAAGAGCAATTTTTACGTCAAGATAATGTAATCAGTTTCTGAAACTGATTCAACAAAACTGTCCAAATCCTCACCTTCGCGATTAAAGGTCCTTGTGTTCTTTTCTGGCCGAAGTTCATCAACAGACGATCCTTGATTTATAGCCATAAAATCTCCCTTGCTTTTTTGAAAGGATGGCCTCTGCATTTTGTTACCATAGATTGAATTTATTTGATTTACCAATATGATTTCTTACAAGATGATATTGAGATACATATATGGGTATATATTTTGTAAATTCATGCCACGACATGTTTACAATTTCCCATCCTTCAGGTTCTTTGTCGTAGCTAAATTCCAATTTGTGAGTTTTGCTTAAATTAGAGAGTATTAAACTAGTTAGCCAAAGTATGCTCTCGTTTCATGATTGATGAAATGCTTAGACATGCTTCTAAAACAAATGAAGAAAACCATCCTCACTCTCTTTCCCAGGACATATTATTGAAGATATCTTAATAATAGAACTCCGCAGGTTCCTTGTACTTTATACGCTTATTGGTCTTTTGTCCTGGATGGTCATATGCTCATGTTTTAGTTGGACTCCATTGAAGAATTTTGCCAAGATCATTGCAGTATGACTCTCGTCTTTATTATACTCCCTGGTCCTTCTTGCTGCCTTATATCACTTGAAAGTTTCTGCAGGAAACTTGTGGGGCACCCTTGATCCGTATTCATTGATAGACGAATATCTATCTACCATTCACAAGAGAGGATGAGTTTTTAAAGTCTTTCCGTCTAGATTGAGAGGTACTGCCCAAGGAAAAGAAAAGGTGACTTCCGGATCAAGGATAATAAATAAAATGGAAATAAGATAAAATCGTATATCGAAACGACTTCTGGCATCACCGGAAGGATCGAAACCACATTCATAGGCCGACAATTTTTCTGGATAGGTTGAACTATTGGAAGCAAATGGAAAAGGAAGACCGAGTGGGATCAAAGAAACTAGCAGACTGATCACTAAATAGATACAAATAGGTGCAAATTCTGACATCACCACAGCCCACTTGTTGGTTCTTTCGCTCCTTGATCGCGGAGCGGCATACCGAAAAAGAAAAGAAGAAGAAGAAGAAAAAGCCCATTACGAAACCTTCACTATCAAGTCCAAGATAATGACAGAAATTACAATGAGAAATTTAGCCGGATGAAGATCAGAAAAAAGCAGCACTCAAACGAGGCGGGAGATCCATGTGAAGCAGACCTACAATCCGATAAGGAGAGATTCAATCAACCTAATTTTGTCTAAGAGTTTTGCTCAAAATGGTCAATTATTGGAATTAATGGGTTTCACTCTTGATTCAAACCAATTTCTGATCACATTTGGTGAGTCAATTATCATGTATTATGCCTACCTTGCTGTGAAAGACACTGTCAAATGCCAATTCATTGGGATGCAAAATATGTCACTTTTTTTTTTTCTTTTTTTTTTTCTTTTTTTTTTTTGCGGGATGCTAGATAGTAGATACGTCACTTCTTTTTTTACTTCATTTTTGTTCAATCTTGTTGGAGAGGATTTGTTGGCTTTTTTGATATTTGAATGAGATTCAAGTATTTTTCTTAAATTCTAGCAATCTGCTTTGTAATCTTATACTACCTACTTTGTGTAAACTTAGTTCAATTTATTAAAAGTATCAATTTGTGCATGTAATTTGACATTTTCTTTTTGATCTATCAAGTTCTAAGTCAGGATGCATTGATAGCTTAGGGTAAGCACAGCCATTCTTGGTTGTCATTTTGATCTTATAGAAAATGTTGTGATATTCTGGACGAAATGGAGTTCATAACCTCTTTATTTCTTTTCTTTTATCCTCATTTTCTTTTGTATGTCGAGAATGTGGATCTACTTCCCCTTGTCAAAATTTTGTTCTGGGAATAAAACTTTCTATTCTCTTACAGCTTTGTGTTGCCGACTGCAAGAACTTAGATCTTGAGATGGGCATTGAGTAAGTGCAGTCTCAGATCATGATCTCGGGAATTGCTCTTTTTTCCATGTTAAGACCATTTAATTTTGGGGGTAAAATTTGTGCAAGAAATTCTGGGTTGCTGAGTGGGGGGCTATCATATCATCCGTCGTCATTTTGGGATAGCATGGTGTTGGGCATGGTTGGAGTAAGATGTGTTCAAATACCAATCATAATTGAATCATGGTGAGCGAGGGTTCTCTTAAGAAATTTGGAGGTGATCAAATAACAAGCTAGAGAAGTGTTATGGTCTGCCTGGTTGAGACTATTGGTATGAGCTCTAAATGAACTTACAGGTGCATTGACCAACGGTTGAGGGCTACCAGCTTTACTCTGGTATTTGACTCATATGAAGTGGAGATGCCAATTTATGTCATATGGTGGATTTTTTTCACTGCCTAGATTTCCATCCGAGGGATGAAATTATTCTCGTGGAGAGACATTGATTGAGCTGTATTGGTGTAAGGGCCATCTGAATTATGTGTAGCAACTTCTTGATCTATTTGTCAGGTTCATAAAGGGTTGATTTGCAGGTGAAGTTTGGGATCTTCACATTTCATTTCCTACGTCATCCTGCAAATTAGGGATTTGTTTCAACTAAATATATGGTAGTGTGAATGGGCATATCAATGGCACCCGGTGGTTAATAGTTGGATTAACTGGATTCCTTTCATCGTATGAACTCTTACATACTTTTTTTGTGGTCAATGACTGAAGGTATCATTGGTCATTTCAAGAGGATATGGTTAAGCCCGCTAGATTCTGCAGAAAATTATTCTAGCAGCATGCATGGAAATCCATTGGTCTATTTCTGAAAGCCGTGGAGGAACGAACTATTGTGACCATGCAAGTAAGATTTGGAGTTTGATTTCTGAATTAACCGAAGAGTAGGATGGGTGCCATTGTTTAATCTGGTTTTTGGATGCTTCAATTTGTGTGGATTTTTTAATGACGGTTTTTTTCCTGTGAGCTTTTCACTGTGGTCTTACTGAGCCTCCCAGGTGCAATTCAACTGAAGAATTCTGTATTTAAGCATGGGTTGATTATGCTGTGTGATTATTTCTGTACGTGTTGTTCATTTAAGATTGGGCTATCGGTGGATGTCCTTCCTCATTGCCAGGACATCACCACACTGATTTTTTTTTTCTTCAAGACTTGTGCTTTTGGTCTCATTGCTGGGTTTGTGAAAAATTGGAAATAGATTACCTGTAGGCTATGATAATTCAAAATGTGGGTTTTACATGTACTAACACTGGACATGTGGAAAGAAGGACGTGTACATTGCAAGTTGCTATGGTTTTGTTATCTTATTTGCTTCTGTTCAAGTTTCTGATGATATGGGTGGTAACGTATTGAACGTATACAGGCAGTTATCATCAGAACTTTCTCTCTTGTCTGCATCTTTGCACCTTCTATTGCTCTGTCCACAGAGAGGAGATGCCAACAATGAATGGCAATGGTTGTCAATTTGTTTGGATGGTCCTTTTGCAGTTGTATCAGGGAAAATCTTTGGAGATATATGGATGTTGTACATCAAATAATCTTCCTATACAATATGTTACTTTTCTTAATATCTTATAAATCCACTACCATCTTTCTTTCAGGATATAGAATACATGCAGGTTCAGCTTCTCCAACACGTCATCGGGATGATCACCGGTATGTTTCTGATTTTGATCGTTCTGGTGATCTCATGCGGGGCCGTGAATTTGGAGGCAGGAGCGATCATGGTAGATATCGAGAGACTTCACCCCATTACAGTCGAAGAATAAGTGGTGGCAGGCCATATGGGAGAGGTTTTGCTCCTGAGCCATTTAGAGGGGAACGTAGTAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTGTAAGTACTCACCTAACAC

mRNA sequence

ATGGGTTCGAGGGATAAAGACTCTACGACTAACCACCAGCCGTTATTGAGCAGCCTGGTAGTACGGCCATCGAATAGTGACGGAGGTGGTGGCGGAGTCGGTGCAACCAGTGGCGGCCGAGTTGGTCGTGGAAGCGATTACGAGGCCGGTGAGGATATAGAATACATGCAGGTTCAGCTTCTCCAACACGTCATCGGGATGATCACCGGTATGTTTCTGATTTTGATCGTTCTGGTGATCTCATGCGGGGCCGTGAATTTGGAGGCAGGAGCGATCATGGTAGATATCGAGAGACTTCACCCCATTACAGTCGAAGAATAAGTGGTGGCAGGCCATATGGGAGAGGTTTTGCTCCTGAGCCATTTAGAGGGGAACGTAGTAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTGTAAGTACTCACCTAACAC

Coding sequence (CDS)

ATGGGTTCGAGGGATAAAGACTCTACGACTAACCACCAGCCGTTATTGAGCAGCCTGGTAGTACGGCCATCGAATAGTGACGGAGGTGGTGGCGGAGTCGGTGCAACCAGTGGCGGCCGAGTTGGTCGTGGAAGCGATTACGAGGCCGGTGAGGATATAGAATACATGCAGGTTCAGCTTCTCCAACACGTCATCGGGATGATCACCGGTATGTTTCTGATTTTGATCGTTCTGGTGATCTCATGCGGGGCCGTGAATTTGGAGGCAGGAGCGATCATGGTAGATATCGAGAGACTTCACCCCATTACAGTCGAAGAATAA

Protein sequence

MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGEDIEYMQVQLLQHVIGMITGMFLILIVLVISCGAVNLEAGAIMVDIERLHPITVEE
Homology
[Close]
BLAST of CmoCh11G006270 vs. ExPASy TrEMBL
Match: A0A5D3E321 (TATA-binding protein-associated factor 2N OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3607G00140 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.7e-17
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE 52
          MGSRDKDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSGGRVGRGSDYEAGE
Sbjct: 1  MGSRDKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGE 51

[Close]
BLAST of CmoCh11G006270 vs. ExPASy TrEMBL
Match: A0A1S3CHL9 (uncharacterized protein LOC103501026 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501026 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.7e-17
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE 52
          MGSRDKDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSGGRVGRGSDYEAGE
Sbjct: 1  MGSRDKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGE 51

[Close]
BLAST of CmoCh11G006270 vs. ExPASy TrEMBL
Match: A0A1S3CHP1 (uncharacterized protein LOC103501026 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501026 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 1  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAG 51
          MGSRDKDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSGGRVGRGSDYEAG
Sbjct: 1  MGSRDKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAG 50

[Close]
BLAST of CmoCh11G006270 vs. ExPASy TrEMBL
Match: A0A6J1HA20 (uncharacterized protein LOC111461847 isoform X6 OS=Cucurbita moschata OX=3662 GN=LOC111461847 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.4e-16
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 1  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE 52
          MGSR KDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSGGRVGRGSDYEAGE
Sbjct: 1  MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGE 51

[Close]
BLAST of CmoCh11G006270 vs. ExPASy TrEMBL
Match: A0A6J1HBT6 (uncharacterized protein LOC111461847 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461847 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.4e-16
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 1  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE 52
          MGSR KDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSGGRVGRGSDYEAGE
Sbjct: 1  MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGE 51

[Close]
BLAST of CmoCh11G006270 vs. NCBI nr
Match: KAG6587972.1 (hypothetical protein SDJN03_16537, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.6 bits (244), Expect = 3.4e-17
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1   MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE 52
           MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSG RVGRGSDYEAGE
Sbjct: 69  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGE 119

[Close]
BLAST of CmoCh11G006270 vs. NCBI nr
Match: XP_008462733.1 (PREDICTED: uncharacterized protein LOC103501026 isoform X1 [Cucumis melo] >KAA0062605.1 TATA-binding protein-associated factor 2N [Cucumis melo var. makuwa] >TYK29705.1 TATA-binding protein-associated factor 2N [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 7.7e-17
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE 52
          MGSRDKDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSGGRVGRGSDYEAGE
Sbjct: 1  MGSRDKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGE 51

[Close]
BLAST of CmoCh11G006270 vs. NCBI nr
Match: KAG7021862.1 (hypothetical protein SDJN02_15590, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-16
Identity = 62/120 (51.67%), Postives = 74/120 (61.67%), Query Frame = 0 

Query: 1   MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE--------- 60
           MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSG RVGRGSDYEAGE         
Sbjct: 69  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYS 128

Query: 61  -------DIEYMQVQLLQHVIGMITGMFL--------------ILIVLVISCGAVNLEAG 91
                  D+E  +  +L  +IG+++ M +              I+ + V  C  ++LE G
Sbjct: 129 RLDRYSADLELRRFLVLYTLIGLLSWMVICSCFSWTPLKNFAKIVALCVADCKNLDLEKG 188

[Close]
BLAST of CmoCh11G006270 vs. NCBI nr
Match: XP_004142516.1 (uncharacterized protein LOC101209122 isoform X1 [Cucumis sativus] >KAE8653632.1 hypothetical protein Csa_007003 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-16
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE 52
          MGSRDKDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSGGRVGRG+DYEAGE
Sbjct: 1  MGSRDKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGTDYEAGE 51

[Close]
BLAST of CmoCh11G006270 vs. NCBI nr
Match: XP_008462734.1 (PREDICTED: uncharacterized protein LOC103501026 isoform X2 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 2.9e-16
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 1  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAG 51
          MGSRDKDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSGGRVGRGSDYEAG
Sbjct: 1  MGSRDKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAG 50

The following BLAST results are available for this feature:
BLAST of CmoCh11G006270 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G006270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E3213.7e-1796.08TATA-binding protein-associated factor 2N OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A1S3CHL93.7e-1796.08uncharacterized protein LOC103501026 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3CHP11.4e-1696.00uncharacterized protein LOC103501026 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1HA202.4e-1694.12uncharacterized protein LOC111461847 isoform X6 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1HBT62.4e-1694.12uncharacterized protein LOC111461847 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of CmoCh11G006270 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6587972.13.4e-1798.04hypothetical protein SDJN03_16537, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008462733.17.7e-1796.08PREDICTED: uncharacterized protein LOC103501026 isoform X1 [Cucumis melo] >KAA00... [more]
KAG7021862.11.3e-1651.67hypothetical protein SDJN02_15590, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_004142516.11.7e-1694.12uncharacterized protein LOC101209122 isoform X1 [Cucumis sativus] >KAE8653632.1 ... [more]
XP_008462734.12.9e-1696.00PREDICTED: uncharacterized protein LOC103501026 isoform X2 [Cucumis melo][more]
BLAST of CmoCh11G006270 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G006270.1CmoCh11G006270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003723 RNA binding