CmoCh11G005680 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G005680
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Amino-acid racemase isoform 2
Location	Cmo_Chr11: 2744842 .. 2746218 (-)
RNA-Seq Expression	CmoCh11G005680
Synteny	CmoCh11G005680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACTTCCTGGAGCTTCTCTTCCTGTCTTACCTAGTTTTGCGCCATACACTATTTGCTTTGAATGTGAAGAAACCCAGAGCCCCGCTTCTTCTTAACAACCTTTGTACTTCCATGGATTCTCGTGTAAATATCATGTCTTTCTTCATATTTTAATCCTGACAGATTTTTGGGTTTTTGGGGCATGAGTATTTGATGCTCCAATCTATTTCTTTCCACCCATTGAATTATCTATCTGTTCTGAGGAGAAATATGGCTGCTTAGTTTGAATCCCACTGAAATTCTTGCTCTTTACATAAAGGATGCTTGATGGAGGGATGGCTATGCCCTTTTATGCACTGAATTGCCCCGCACCTGTTCGACGAAATGCTAACGAAAGCATTACTCGCTTTAGAAGGAGATTAAACCCGTATTCATCTCTACAGATTTTCTCTGTTGTTCAAACGGATGAGAATGATAACTTACCAGTGTCCAAGAAGATATCAACTCCAGGAAAGTCTGTGTCAAAAGGTCGAGCTCCTAAGCCGCTTCTTGTCCAGCCAAATACCGTGGGTGTCATAGGAGGAGTATCGGTTATTTCTACTCTACTTTTCTTGGAAAAGCTCGTGTGGTGGAGCTTGAAGGATGGACAACAGAGCATACCATTTGTTGTCTGCAGCGATCCAGCATTAGGCAAAGGGATCCCCCCTCTCACTTCATTGACTACATTCCCCGCAAATTCTTCTCAACATGCTCAGACTGATGCTCCCATCATCGAGATTTTGAAGCAAAAATGCGTGTTTCTCGAGCAATCTGGAGCTCGGTGCCTAATTACACCTTGCCATCTTTCACATAGGTGGCTTAGTGACACAAGTTGTAAATTACCTTTCCTTCATGTGGGAGATTGTGTTGCTATGGAGCTTAAAGAGGCTAAGCTTAAGCCACTTGAAGCAGGGAGCAGTGTCCGGATTGGGCTGCTTGCGACTGATGCAGCTATAGTGACTGGTTTTTACCGTGAGAGACTACAAAATCAGGTTTTGTTAAATACATTCAGATCTATTTAGTAAATGATTCCAGAATTTGGTTCTGATTTCATTTTGTTTCTTCAGGGCTTTGAGGTTGTCTTGCCAGACGAAGCAACCATAAAGCATATTTTAGTTCCTGCAGTTGAAGCTTTGAACAAAAGGGATCAGGAAGGAGCAAGAAATCTGTTGAGGATTGCTGTTCATATTCTTTTGATAAGGGCTGTGAATATAGTAATACTTGCTTCTGATGAATTGCTTAATCTTCTTCCTCCAGATGATCCTATTCTGAAGAAATGTATTGACCCCATGGATGCGTTGGCCAGAGCAGCCATTAAATGGTCTAGATCTACAGGAAACTTACATGAGAAAGCTTAG

mRNA sequence

GCACTTCCTGGAGCTTCTCTTCCTGTCTTACCTAGTTTTGCGCCATACACTATTTGCTTTGAATGTGAAGAAACCCAGAGCCCCGCTTCTTCTTAACAACCTTTGTACTTCCATGGATTCTCGTGTAAATATCATGTCTTTCTTCATATTTTAATCCTGACAGATTTTTGGGTTTTTGGGGCATGAGTATTTGATGCTCCAATCTATTTCTTTCCACCCATTGAATTATCTATCTGTTCTGAGGAGAAATATGGCTGCTTAGTTTGAATCCCACTGAAATTCTTGCTCTTTACATAAAGGATGCTTGATGGAGGGATGGCTATGCCCTTTTATGCACTGAATTGCCCCGCACCTGTTCGACGAAATGCTAACGAAAGCATTACTCGCTTTAGAAGGAGATTAAACCCGTATTCATCTCTACAGATTTTCTCTGTTGTTCAAACGGATGAGAATGATAACTTACCAGTGTCCAAGAAGATATCAACTCCAGGAAAGTCTGTGTCAAAAGGTCGAGCTCCTAAGCCGCTTCTTGTCCAGCCAAATACCGTGGGTGTCATAGGAGGAGTATCGGTTATTTCTACTCTACTTTTCTTGGAAAAGCTCGTGTGGTGGAGCTTGAAGGATGGACAACAGAGCATACCATTTGTTGTCTGCAGCGATCCAGCATTAGGCAAAGGGATCCCCCCTCTCACTTCATTGACTACATTCCCCGCAAATTCTTCTCAACATGCTCAGACTGATGCTCCCATCATCGAGATTTTGAAGCAAAAATGCGTGTTTCTCGAGCAATCTGGAGCTCGGTGCCTAATTACACCTTGCCATCTTTCACATAGGTGGCTTAGTGACACAAGTTGTAAATTACCTTTCCTTCATGTGGGAGATTGTGTTGCTATGGAGCTTAAAGAGGCTAAGCTTAAGCCACTTGAAGCAGGGAGCAGTGTCCGGATTGGGCTGCTTGCGACTGATGCAGCTATAGTGACTGGTTTTTACCGTGAGAGACTACAAAATCAGGGCTTTGAGGTTGTCTTGCCAGACGAAGCAACCATAAAGCATATTTTAGTTCCTGCAGTTGAAGCTTTGAACAAAAGGGATCAGGAAGGAGCAAGAAATCTGTTGAGGATTGCTGTTCATATTCTTTTGATAAGGGCTGTGAATATAGTAATACTTGCTTCTGATGAATTGCTTAATCTTCTTCCTCCAGATGATCCTATTCTGAAGAAATGTATTGACCCCATGGATGCGTTGGCCAGAGCAGCCATTAAATGGTCTAGATCTACAGGAAACTTACATGAGAAAGCTTAG

Coding sequence (CDS)

ATGCTTGATGGAGGGATGGCTATGCCCTTTTATGCACTGAATTGCCCCGCACCTGTTCGACGAAATGCTAACGAAAGCATTACTCGCTTTAGAAGGAGATTAAACCCGTATTCATCTCTACAGATTTTCTCTGTTGTTCAAACGGATGAGAATGATAACTTACCAGTGTCCAAGAAGATATCAACTCCAGGAAAGTCTGTGTCAAAAGGTCGAGCTCCTAAGCCGCTTCTTGTCCAGCCAAATACCGTGGGTGTCATAGGAGGAGTATCGGTTATTTCTACTCTACTTTTCTTGGAAAAGCTCGTGTGGTGGAGCTTGAAGGATGGACAACAGAGCATACCATTTGTTGTCTGCAGCGATCCAGCATTAGGCAAAGGGATCCCCCCTCTCACTTCATTGACTACATTCCCCGCAAATTCTTCTCAACATGCTCAGACTGATGCTCCCATCATCGAGATTTTGAAGCAAAAATGCGTGTTTCTCGAGCAATCTGGAGCTCGGTGCCTAATTACACCTTGCCATCTTTCACATAGGTGGCTTAGTGACACAAGTTGTAAATTACCTTTCCTTCATGTGGGAGATTGTGTTGCTATGGAGCTTAAAGAGGCTAAGCTTAAGCCACTTGAAGCAGGGAGCAGTGTCCGGATTGGGCTGCTTGCGACTGATGCAGCTATAGTGACTGGTTTTTACCGTGAGAGACTACAAAATCAGGGCTTTGAGGTTGTCTTGCCAGACGAAGCAACCATAAAGCATATTTTAGTTCCTGCAGTTGAAGCTTTGAACAAAAGGGATCAGGAAGGAGCAAGAAATCTGTTGAGGATTGCTGTTCATATTCTTTTGATAAGGGCTGTGAATATAGTAATACTTGCTTCTGATGAATTGCTTAATCTTCTTCCTCCAGATGATCCTATTCTGAAGAAATGTATTGACCCCATGGATGCGTTGGCCAGAGCAGCCATTAAATGGTCTAGATCTACAGGAAACTTACATGAGAAAGCTTAG

Protein sequence

MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKISTPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSDPALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWLSDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFEVVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPPDDPILKKCIDPMDALARAAIKWSRSTGNLHEKA

Homology

[Close]

BLAST of CmoCh11G005680 vs. ExPASy Swiss-Prot
Match: O58403 (Aspartate racemase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=PH0670 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-12
Identity = 62/242 (25.62%), Postives = 108/242 (44.63%), Query Frame = 0


Query: 82  TVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSDPALGKGIPPLTSLTTFPANSS 141
           T+G++GG+  ++T     ++V  +     Q  P V+  +       P +   T +     
Sbjct: 3   TIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNN------PQIPDRTAYILGKG 62

Query: 142 QHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWLSD--TSCKLPFLHVGDCVAME 201
           +  +    +I   K+    LE+ GA  +I PC+ +H ++ D   + K+P + + +  A +
Sbjct: 63  EDPRPQ--LIWTAKR----LEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKK 122

Query: 202 LKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFEVVLPDEATIKHILVPAVEA 261
           +KE   K        + GLLAT   IV+G Y +     G E++ P E   K ++    E 
Sbjct: 123 VKELGFK--------KAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEG 182

Query: 262 LNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPPDDPILKKCIDPMDALARAA 321
           +   + +  R LL     IL  R    +I    E+  +L  DD +    IDPMD +A  A
Sbjct: 183 VKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDD-LKVPLIDPMDVIAEVA 223

[Close]

BLAST of CmoCh11G005680 vs. ExPASy TrEMBL
Match: A0A6J1EU92 (uncharacterized protein LOC111437803 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437803 PE=4 SV=1)

HSP 1 Score: 663.3 bits (1710), Expect = 5.3e-187
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0


Query: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120

Query: 121 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 121 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180

Query: 181 SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
           SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 181 SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240

Query: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 300
           VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP
Sbjct: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 300

Query: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 334
           DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA
Sbjct: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 333

[Close]

BLAST of CmoCh11G005680 vs. ExPASy TrEMBL
Match: A0A6J1L4S4 (uncharacterized protein LOC111499133 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499133 PE=4 SV=1)

HSP 1 Score: 654.1 bits (1686), Expect = 3.2e-184
Identity = 329/333 (98.80%), Postives = 330/333 (99.10%), Query Frame = 0


Query: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           S+ GKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 61  SSAGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120

Query: 121 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTF ANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 121 PALGKGIPPLTSLTTFTANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180

Query: 181 SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
            DTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240

Query: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 300
           VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP
Sbjct: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 300

Query: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 334
           DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA
Sbjct: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 333

[Close]

BLAST of CmoCh11G005680 vs. ExPASy TrEMBL
Match: A0A6J1EZC0 (uncharacterized protein LOC111437803 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437803 PE=4 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 9.5e-152
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0


Query: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120

Query: 121 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 121 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180

Query: 181 SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
           SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 181 SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240

Query: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNL 272
           VVLPDEATIKHILVPAVEALNKRDQEGARNL
Sbjct: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNL 271

[Close]

BLAST of CmoCh11G005680 vs. ExPASy TrEMBL
Match: A0A5A7TXR8 (Amino-acid racemase isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00390 PE=4 SV=1)

HSP 1 Score: 540.0 bits (1390), Expect = 6.8e-150
Identity = 276/331 (83.38%), Postives = 296/331 (89.43%), Query Frame = 0


Query: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           ML GGMAM FYA  CPAPVRRNANE ITRFRRR+N YSS+QI SVVQTD NDNLP SKKI
Sbjct: 2   MLHGGMAMHFYAPICPAPVRRNANEGITRFRRRINLYSSVQISSVVQTDANDNLPRSKKI 61

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           S+ GKS+SK R PKPLLVQPNTVGVIGGVSV STLLFLEKLVWWSLKDGQ+SIPFVVCS+
Sbjct: 62  SSLGKSLSKTRTPKPLLVQPNTVGVIGGVSVFSTLLFLEKLVWWSLKDGQESIPFVVCSE 121

Query: 121 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPP+TSL TF  +SSQ+  +DAPIIE L +K  FLE SGARCLITPCHL+HRWL
Sbjct: 122 PALGKGIPPVTSLCTFSTDSSQYGHSDAPIIENLNRKRAFLELSGARCLITPCHLTHRWL 181

Query: 181 SDT--SCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQG 240
           SDT  SCKLPFLHVGDCVA ELKEA LKPLE G +VRIGLLATD   VTG Y ERLQNQG
Sbjct: 182 SDTSESCKLPFLHVGDCVARELKEATLKPLEGGRNVRIGLLATDTT-VTGIYYERLQNQG 241

Query: 241 FEVVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLL 300
           F+V+LPDEAT+KHI++PAVEALNKRDQEGARNLLRIAVH+LLIRAVN+VILASDELLNLL
Sbjct: 242 FDVLLPDEATMKHIVIPAVEALNKRDQEGARNLLRIAVHVLLIRAVNMVILASDELLNLL 301

Query: 301 PPDDPILKKCIDPMDALARAAIKWSRSTGNL 330
           PPDDPILKKCIDPMDALARAAIKWSRST NL
Sbjct: 302 PPDDPILKKCIDPMDALARAAIKWSRSTENL 331

[Close]

BLAST of CmoCh11G005680 vs. ExPASy TrEMBL
Match: A0A1S3CMU2 (uncharacterized protein LOC103502741 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502741 PE=4 SV=1)

HSP 1 Score: 540.0 bits (1390), Expect = 6.8e-150
Identity = 276/331 (83.38%), Postives = 296/331 (89.43%), Query Frame = 0


Query: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           ML GGMAM FYA  CPAPVRRNANE ITRFRRR+N YSS+QI SVVQTD NDNLP SKKI
Sbjct: 2   MLHGGMAMHFYAPICPAPVRRNANEGITRFRRRINLYSSVQISSVVQTDANDNLPRSKKI 61

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           S+ GKS+SK R PKPLLVQPNTVGVIGGVSV STLLFLEKLVWWSLKDGQ+SIPFVVCS+
Sbjct: 62  SSLGKSLSKTRTPKPLLVQPNTVGVIGGVSVFSTLLFLEKLVWWSLKDGQESIPFVVCSE 121

Query: 121 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPP+TSL TF  +SSQ+  +DAPIIE L +K  FLE SGARCLITPCHL+HRWL
Sbjct: 122 PALGKGIPPVTSLCTFSTDSSQYGHSDAPIIENLNRKRAFLELSGARCLITPCHLTHRWL 181

Query: 181 SDT--SCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQG 240
           SDT  SCKLPFLHVGDCVA ELKEA LKPLE G +VRIGLLATD   VTG Y ERLQNQG
Sbjct: 182 SDTSESCKLPFLHVGDCVARELKEATLKPLEGGRNVRIGLLATDTT-VTGIYYERLQNQG 241

Query: 241 FEVVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLL 300
           F+V+LPDEAT+KHI++PAVEALNKRDQEGARNLLRIAVH+LLIRAVN+VILASDELLNLL
Sbjct: 242 FDVLLPDEATMKHIVIPAVEALNKRDQEGARNLLRIAVHVLLIRAVNMVILASDELLNLL 301

Query: 301 PPDDPILKKCIDPMDALARAAIKWSRSTGNL 330
           PPDDPILKKCIDPMDALARAAIKWSRST NL
Sbjct: 302 PPDDPILKKCIDPMDALARAAIKWSRSTENL 331

[Close]

BLAST of CmoCh11G005680 vs. NCBI nr
Match: XP_022931647.1 (uncharacterized protein LOC111437803 isoform X1 [Cucurbita moschata])

HSP 1 Score: 663.3 bits (1710), Expect = 1.1e-186
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0


Query: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120

Query: 121 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 121 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180

Query: 181 SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
           SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 181 SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240

Query: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 300
           VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP
Sbjct: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 300

Query: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 334
           DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA
Sbjct: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 333

[Close]

BLAST of CmoCh11G005680 vs. NCBI nr
Match: XP_023530993.1 (uncharacterized protein LOC111793383 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 661.8 bits (1706), Expect = 3.2e-186
Identity = 332/333 (99.70%), Postives = 332/333 (99.70%), Query Frame = 0


Query: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 2   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 61

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 62  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 121

Query: 121 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 122 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 181

Query: 181 SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
            DTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 182 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 241

Query: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 300
           VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP
Sbjct: 242 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 301

Query: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 334
           DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA
Sbjct: 302 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 334

[Close]

BLAST of CmoCh11G005680 vs. NCBI nr
Match: XP_023006388.1 (uncharacterized protein LOC111499133 isoform X1 [Cucurbita maxima])

HSP 1 Score: 654.1 bits (1686), Expect = 6.7e-184
Identity = 329/333 (98.80%), Postives = 330/333 (99.10%), Query Frame = 0


Query: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           S+ GKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 61  SSAGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120

Query: 121 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTF ANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 121 PALGKGIPPLTSLTTFTANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180

Query: 181 SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
            DTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240

Query: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 300
           VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP
Sbjct: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 300

Query: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 334
           DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA
Sbjct: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 333

[Close]

BLAST of CmoCh11G005680 vs. NCBI nr
Match: KAG7021803.1 (hypothetical protein SDJN02_15531, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 650.2 bits (1676), Expect = 9.6e-183
Identity = 326/333 (97.90%), Postives = 328/333 (98.50%), Query Frame = 0


Query: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMA+PFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 1   MLDGGMAVPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120

Query: 121 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTF  NSSQHAQ DAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 121 PALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180

Query: 181 SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
            DTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240

Query: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 300
           VVLPD+ATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDE LNLLPP
Sbjct: 241 VVLPDDATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDEFLNLLPP 300

Query: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 334
           DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA
Sbjct: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 333

[Close]

BLAST of CmoCh11G005680 vs. NCBI nr
Match: KAG6587918.1 (hypothetical protein SDJN03_16483, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 647.9 bits (1670), Expect = 4.8e-182
Identity = 325/333 (97.60%), Postives = 327/333 (98.20%), Query Frame = 0


Query: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMA+PFYALNCPAPVRRNANESIT FRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 1   MLDGGMAVPFYALNCPAPVRRNANESITSFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120

Query: 121 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTF  NSSQHAQ DAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 121 PALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180

Query: 181 SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
            DTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240

Query: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 300
           VVLPD+ATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDE LNLLPP
Sbjct: 241 VVLPDDATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDEFLNLLPP 300

Query: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 334
           DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA
Sbjct: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 333

[Close]

BLAST of CmoCh11G005680 vs. TAIR 10
Match: AT1G15410.1 (aspartate-glutamate racemase family )

HSP 1 Score: 285.8 bits (730), Expect = 4.4e-77
Identity = 143/291 (49.14%), Postives = 209/291 (71.82%), Query Frame = 0


Query: 45  VVQTDENDNLPVSKK---ISTPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKL 104
           ++  DE+++LP  KK   +S   ++         LL Q NTVG+IGGVS  STL F++KL
Sbjct: 40  LLHMDESNDLPKPKKGFCLSEDSRNSLNSLPADSLLRQANTVGIIGGVSTDSTLKFVKKL 99

Query: 105 VWWSLKDGQQSIPFVVCSDPALGKGIPPLTSLTTFPANSSQHAQTDAP-----IIEILKQ 164
           V WS  DG+ S+PFV+CSDPAL K +  L    ++P  S  H +   P     I+E L+ 
Sbjct: 100 VDWSSNDGKSSLPFVLCSDPALNKEL-LLYEENSYP--SLYHREESTPVDPKLIVENLRN 159

Query: 165 KCVFLEQSGARCLITPCHLSHRWLSDT--SCKLPFLHVGDCVAMELKEAKLKPLEAGSSV 224
           K  +LE+ GA+ ++ PCH++H W  +      +P LH+G+C+A EL+EAK+KPLEAG+ +
Sbjct: 160 KRRYLERCGAKLILMPCHIAHIWYEEVCEGSLVPLLHMGECIAKELQEAKMKPLEAGNPL 219

Query: 225 RIGLLATDAAIVTGFYRERLQNQGFEVVLPDEATIKHILVPAVEALNKRDQEGARNLLRI 284
           R+G++AT A +  GFY+E+LQ+ GFE VLPD+AT++H ++P++EA+ ++D EGARNLLRI
Sbjct: 220 RVGVMATSATLSAGFYQEKLQSNGFEAVLPDKATMEHTVIPSIEAMKRKDMEGARNLLRI 279

Query: 285 AVHILLIRAVNIVILASDELLNLLPPDDPILKKCIDPMDALARAAIKWSRS 326
           A+ +LL++AVN+V+L SDE+ +LLP DDP+LKKC+DPMDALAR+AIKW+ +
Sbjct: 280 ALQVLLVQAVNVVMLGSDEMRDLLPGDDPLLKKCVDPMDALARSAIKWAEN 327

The following BLAST results are available for this feature:

BLAST of CmoCh11G005680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O58403	1.7e-12	25.62	Aspartate racemase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JC...	[more]

BLAST of CmoCh11G005680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EU92	5.3e-187	100.00	uncharacterized protein LOC111437803 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1L4S4	3.2e-184	98.80	uncharacterized protein LOC111499133 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EZC0	9.5e-152	100.00	uncharacterized protein LOC111437803 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7TXR8	6.8e-150	83.38	Amino-acid racemase isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A1S3CMU2	6.8e-150	83.38	uncharacterized protein LOC103502741 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CmoCh11G005680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931647.1	1.1e-186	100.00	uncharacterized protein LOC111437803 isoform X1 [Cucurbita moschata]	[more]
XP_023530993.1	3.2e-186	99.70	uncharacterized protein LOC111793383 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023006388.1	6.7e-184	98.80	uncharacterized protein LOC111499133 isoform X1 [Cucurbita maxima]	[more]
KAG7021803.1	9.6e-183	97.90	hypothetical protein SDJN02_15531, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6587918.1	4.8e-182	97.60	hypothetical protein SDJN03_16483, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh11G005680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15410.1	4.4e-77	49.14	aspartate-glutamate racemase family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.1860		coord: 82..317 e-value: 9.4E-40 score: 138.7
None	No IPR available	GENE3D	3.40.50.1860		coord: 194..311 e-value: 9.4E-40 score: 138.7
None	No IPR available	PANTHER	PTHR21198	GLUTAMATE RACEMASE	coord: 1..329
None	No IPR available	PANTHER	PTHR21198:SF9	ASPARTATE RACEMASE	coord: 1..329
IPR015942	Asp/Glu/hydantoin racemase	PFAM	PF01177	Asp_Glu_race	coord: 86..319 e-value: 4.5E-21 score: 75.6
IPR001920	Asp/Glu racemase	SUPERFAMILY	53681	Aspartate/glutamate racemase	coord: 215..322
IPR001920	Asp/Glu racemase	SUPERFAMILY	53681	Aspartate/glutamate racemase	coord: 82..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G005680.1	CmoCh11G005680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006807	nitrogen compound metabolic process
molecular_function	GO:0036361	racemase activity, acting on amino acids and derivatives
molecular_function	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives