CmoCh11G005320 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G005320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	WD repeat-containing protein 11-like
Location	Cmo_Chr11: 2589417 .. 2590412 (-)
RNA-Seq Expression	CmoCh11G005320
Synteny	CmoCh11G005320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCATAGCGAACATAACATCTGGAGGTAGCATCATTTTTCTTCCCTGCTACATGTAGAGGTTTTCCTGCGACATAGAGTTCTGAAATGGCTCCTTTACAGGGCGCTGATATTGTACGTTGCAGCTGGTGCACTGCAAGAGGCACTGGCTGCACTTCGTGAATCGCAGCAACCTGATACTGCAGCCATGTTCGTCCTGGCTTGTCGAGAAATACATGCAGAATTTATCTCCAATTTAGAACATTCAGACGATGAGTCGGATTCTCGTTTTTTGAAGGAAAAACTCCTTAAGTTGCCCGGGTTGGACCCGGAAAACGAAGATGTTATCGCAGTCTGTGAATATTATGGACAATACCAGAGAAAACTGGTGCACCTCTGCATGGACTCCATGCCGTATTCTGACTGAAGACTGTGGTATTACTTCTCTCCAAGTCTGATTTGATTAATTCATTCTTCAGGGAGTTATTTTATCGAGTACGTCCCTGAAATGAAACCACACAGAGTTTATATACGCCGAAATAACTGAAATTAGAAATGACTTCCATGAATCGAAGCTTAGTTGCAGAGAGCATCTCGGGAGTAATCTTTTGCCGGCCAGCTTTAAAGCTAAATCTGCAGAGGAAAGGGGTTCCAATGTGCTGTATTATGATCTAGAAATCTTTGTAGAGGAGTTGTCTATAACGGTATTACTTCATTCAACAGAGGGAGGTTTTGCTTTCTTTTCCTCCATCTCTCTCTTTTTTATTTTTTATTTTTCCCCCTCTTTGTATATAATAGCTTTTTGATAACATGAACGATTCATGAGAAGGATGCAATGGCTTGGCATCAGTTTGTTTGGTAGGAATCTTGGGTGGTCATGAATCCGACACACCCCAACAGTGTTTTTTGTGTTTGTTTTACAGAAATATAGGACTGTAAAAGAAGTCTCTTTTGATGTTCAAATGAATTTTACTGGGTTGGTTCTTTTTCTTGGAATTCTAAGTTCTCCATGA

mRNA sequence

ATGTCTTCCATAGCGAACATAACATCTGGAGAGGTTTTCCTGCGACATAGAGTTCTGAAATGGCTCCTTTACAGGGCGCTGATATTGTACGTTGCAGCTGGTGCACTGCAAGAGGCACTGGCTGCACTTCGTGAATCGCAGCAACCTGATACTGCAGCCATGTTCGTCCTGGCTTGTCGAGAAATACATGCAGAATTTATCTCCAATTTAGAACATTCAGACGATGAGTCGGATTCTCGTTTTTTGAAGGAAAAACTCCTTAAGTTGCCCGGGTTGGACCCGGAAAACGAAGATGTTATCGCAGTCTGTGAATATTATGGACAATACCAGAGAAAACTGGTGCACCTCTGCATGGACTCCATGCCAGAGCATCTCGGGAGTAATCTTTTGCCGGCCAGCTTTAAAGCTAAATCTGCAGAGGAAAGGGGTTCCAATGTGCTGTATTATGATCTAGAAATCTTTGTAGAGGAGTTGTCTATAACGAAATATAGGACTGTAAAAGAAGTCTCTTTTGATGTTCAAATGAATTTTACTGGGTTGGTTCTTTTTCTTGGAATTCTAAGTTCTCCATGA

Coding sequence (CDS)

ATGTCTTCCATAGCGAACATAACATCTGGAGAGGTTTTCCTGCGACATAGAGTTCTGAAATGGCTCCTTTACAGGGCGCTGATATTGTACGTTGCAGCTGGTGCACTGCAAGAGGCACTGGCTGCACTTCGTGAATCGCAGCAACCTGATACTGCAGCCATGTTCGTCCTGGCTTGTCGAGAAATACATGCAGAATTTATCTCCAATTTAGAACATTCAGACGATGAGTCGGATTCTCGTTTTTTGAAGGAAAAACTCCTTAAGTTGCCCGGGTTGGACCCGGAAAACGAAGATGTTATCGCAGTCTGTGAATATTATGGACAATACCAGAGAAAACTGGTGCACCTCTGCATGGACTCCATGCCAGAGCATCTCGGGAGTAATCTTTTGCCGGCCAGCTTTAAAGCTAAATCTGCAGAGGAAAGGGGTTCCAATGTGCTGTATTATGATCTAGAAATCTTTGTAGAGGAGTTGTCTATAACGAAATATAGGACTGTAAAAGAAGTCTCTTTTGATGTTCAAATGAATTTTACTGGGTTGGTTCTTTTTCTTGGAATTCTAAGTTCTCCATGA

Protein sequence

MSSIANITSGEVFLRHRVLKWLLYRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFLKEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMPEHLGSNLLPASFKAKSAEERGSNVLYYDLEIFVEELSITKYRTVKEVSFDVQMNFTGLVLFLGILSSP

Homology

[Close]

BLAST of CmoCh11G005320 vs. ExPASy TrEMBL
Match: A0A6J1KPB4 (WD repeat-containing protein 11-like OS=Cucurbita maxima OX=3661 GN=LOC111497469 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 4.7e-47
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 23   LYRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 82
            ++RALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL
Sbjct: 1230 IWRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 1289

Query: 83   KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 123
            KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP
Sbjct: 1290 KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 1329

[Close]

BLAST of CmoCh11G005320 vs. ExPASy TrEMBL
Match: A0A6J1EZS8 (WD repeat-containing protein 11-like OS=Cucurbita moschata OX=3662 GN=LOC111437747 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 4.7e-47
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 23   LYRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 82
            ++RALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL
Sbjct: 1230 IWRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 1289

Query: 83   KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 123
            KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP
Sbjct: 1290 KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 1329

[Close]

BLAST of CmoCh11G005320 vs. ExPASy TrEMBL
Match: A0A6J1CTK0 (WD repeat-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC111014455 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.1e-42
Identity = 90/100 (90.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 23   LYRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 82
            ++RALILYVAAGALQEALAALRESQQPDTAAMF+LACREIHA+F+SNLEHSDDESDS  L
Sbjct: 1048 IWRALILYVAAGALQEALAALRESQQPDTAAMFILACREIHADFVSNLEHSDDESDSHSL 1107

Query: 83   KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 123
            K KLLKLPGLDPENEDVIAV EYYGQYQRKLVHLCMDS+P
Sbjct: 1108 KVKLLKLPGLDPENEDVIAVGEYYGQYQRKLVHLCMDSLP 1147

[Close]

BLAST of CmoCh11G005320 vs. ExPASy TrEMBL
Match: A0A0A0LWW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G351950 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 7.8e-42
Identity = 89/100 (89.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 23   LYRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 82
            ++RALILYVAAGALQEALAALRESQQPDTAAMF+LACREIHAEFISNLE+SDDESDS  L
Sbjct: 1275 IWRALILYVAAGALQEALAALRESQQPDTAAMFILACREIHAEFISNLENSDDESDSNAL 1334

Query: 83   KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 123
            K KLLKLPGLDPEN+DV+AV EYYGQYQRKLVHLCMDS+P
Sbjct: 1335 KNKLLKLPGLDPENDDVVAVGEYYGQYQRKLVHLCMDSLP 1374

[Close]

BLAST of CmoCh11G005320 vs. ExPASy TrEMBL
Match: A0A5A7U9G3 (WD repeat-containing protein 11 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00910 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.3e-41
Identity = 89/100 (89.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 23  LYRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 82
           ++RALILYVAAGALQEALAALRESQQPDTAAMF+LACREIHAEFISNLE SDDESDS  L
Sbjct: 200 IWRALILYVAAGALQEALAALRESQQPDTAAMFILACREIHAEFISNLEISDDESDSNAL 259

Query: 83  KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 123
           K KLLKLPGLDPEN+DV+AV EYYGQYQRKLVHLCMDS+P
Sbjct: 260 KNKLLKLPGLDPENDDVVAVGEYYGQYQRKLVHLCMDSLP 299

[Close]

BLAST of CmoCh11G005320 vs. NCBI nr
Match: KAG6587891.1 (WD repeat-containing protein 11, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021775.1 WD repeat-containing protein 11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.6 bits (501), Expect = 9.7e-47
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 23   LYRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 82
            ++RALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL
Sbjct: 1230 IWRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 1289

Query: 83   KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 123
            KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP
Sbjct: 1290 KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 1329

[Close]

BLAST of CmoCh11G005320 vs. NCBI nr
Match: XP_023530451.1 (WD repeat-containing protein 11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 9.7e-47
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 23   LYRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 82
            ++RALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL
Sbjct: 1230 IWRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 1289

Query: 83   KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 123
            KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP
Sbjct: 1290 KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 1329

[Close]

BLAST of CmoCh11G005320 vs. NCBI nr
Match: XP_023004047.1 (WD repeat-containing protein 11-like [Cucurbita maxima])

HSP 1 Score: 197.6 bits (501), Expect = 9.7e-47
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 23   LYRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 82
            ++RALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL
Sbjct: 1230 IWRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 1289

Query: 83   KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 123
            KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP
Sbjct: 1290 KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 1329

[Close]

BLAST of CmoCh11G005320 vs. NCBI nr
Match: XP_022931575.1 (WD repeat-containing protein 11-like [Cucurbita moschata])

HSP 1 Score: 197.6 bits (501), Expect = 9.7e-47
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 23   LYRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 82
            ++RALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL
Sbjct: 1230 IWRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 1289

Query: 83   KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 123
            KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP
Sbjct: 1290 KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 1329

[Close]

BLAST of CmoCh11G005320 vs. NCBI nr
Match: XP_022144884.1 (WD repeat-containing protein 11-like, partial [Momordica charantia])

HSP 1 Score: 182.2 bits (461), Expect = 4.2e-42
Identity = 90/100 (90.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 23   LYRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 82
            ++RALILYVAAGALQEALAALRESQQPDTAAMF+LACREIHA+F+SNLEHSDDESDS  L
Sbjct: 1048 IWRALILYVAAGALQEALAALRESQQPDTAAMFILACREIHADFVSNLEHSDDESDSHSL 1107

Query: 83   KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 123
            K KLLKLPGLDPENEDVIAV EYYGQYQRKLVHLCMDS+P
Sbjct: 1108 KVKLLKLPGLDPENEDVIAVGEYYGQYQRKLVHLCMDSLP 1147

[Close]

BLAST of CmoCh11G005320 vs. TAIR 10
Match: AT3G33530.1 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 127.9 bits (320), Expect = 8.8e-30
Identity = 68/102 (66.67%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 23   LYRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRF- 82
            ++RALILYVAAG+LQEALAALRE QQPDT AMFVLAC+EIH+E I+ L   D+ES+S   
Sbjct: 1241 VWRALILYVAAGSLQEALAALREVQQPDTVAMFVLACQEIHSEIITELSTQDEESESASG 1300

Query: 83   -LKEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 123
                 L  LPGL+   E+V AVCEY+ QYQRKLVHLCMDS P
Sbjct: 1301 DGTVPLPDLPGLESGKEEVTAVCEYFQQYQRKLVHLCMDSQP 1342

[Close]

BLAST of CmoCh11G005320 vs. TAIR 10
Match: AT3G33530.2 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 127.9 bits (320), Expect = 8.8e-30
Identity = 68/102 (66.67%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 23   LYRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRF- 82
            ++RALILYVAAG+LQEALAALRE QQPDT AMFVLAC+EIH+E I+ L   D+ES+S   
Sbjct: 1254 VWRALILYVAAGSLQEALAALREVQQPDTVAMFVLACQEIHSEIITELSTQDEESESASG 1313

Query: 83   -LKEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 123
                 L  LPGL+   E+V AVCEY+ QYQRKLVHLCMDS P
Sbjct: 1314 DGTVPLPDLPGLESGKEEVTAVCEYFQQYQRKLVHLCMDSQP 1355

[Close]

BLAST of CmoCh11G005320 vs. TAIR 10
Match: AT3G33530.3 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 127.9 bits (320), Expect = 8.8e-30
Identity = 68/102 (66.67%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 23   LYRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRF- 82
            ++RALILYVAAG+LQEALAALRE QQPDT AMFVLAC+EIH+E I+ L   D+ES+S   
Sbjct: 1272 VWRALILYVAAGSLQEALAALREVQQPDTVAMFVLACQEIHSEIITELSTQDEESESASG 1331

Query: 83   -LKEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 123
                 L  LPGL+   E+V AVCEY+ QYQRKLVHLCMDS P
Sbjct: 1332 DGTVPLPDLPGLESGKEEVTAVCEYFQQYQRKLVHLCMDSQP 1373

[Close]

BLAST of CmoCh11G005320 vs. TAIR 10
Match: AT2G26610.1 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-16
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 23   LYRALILYVAAGALQEALAALRESQQPDTAAMFVLACREIHAEFISNLEHSDDESDSRFL 82
            L+R +ILYVA GA +EALA  R++++ +TAA+F++ACRE  A+  S              
Sbjct: 1170 LWRGVILYVAVGAFEEALAVFRKAERAETAAIFIMACRETLADSWS-------------- 1229

Query: 83   KEKLLKLPGLDPENEDVIAVCEYYGQYQRKLVHLCMDSMP 123
                     +DP+NEDV+ V E Y  YQRKLVHLCMDS P
Sbjct: 1230 ---------IDPKNEDVMVVTESYALYQRKLVHLCMDSPP 1246

The following BLAST results are available for this feature:

BLAST of CmoCh11G005320 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G005320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KPB4	4.7e-47	98.00	WD repeat-containing protein 11-like OS=Cucurbita maxima OX=3661 GN=LOC111497469...	[more]
A0A6J1EZS8	4.7e-47	98.00	WD repeat-containing protein 11-like OS=Cucurbita moschata OX=3662 GN=LOC1114377...	[more]
A0A6J1CTK0	2.1e-42	90.00	WD repeat-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A0A0LWW0	7.8e-42	89.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G351950 PE=4 SV=1	[more]
A0A5A7U9G3	2.3e-41	89.00	WD repeat-containing protein 11 isoform X1 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of CmoCh11G005320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587891.1	9.7e-47	98.00	WD repeat-containing protein 11, partial [Cucurbita argyrosperma subsp. sororia]...	[more]
XP_023530451.1	9.7e-47	98.00	WD repeat-containing protein 11-like [Cucurbita pepo subsp. pepo]	[more]
XP_023004047.1	9.7e-47	98.00	WD repeat-containing protein 11-like [Cucurbita maxima]	[more]
XP_022931575.1	9.7e-47	98.00	WD repeat-containing protein 11-like [Cucurbita moschata]	[more]
XP_022144884.1	4.2e-42	90.00	WD repeat-containing protein 11-like, partial [Momordica charantia]	[more]

BLAST of CmoCh11G005320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G33530.1	8.8e-30	66.67	Transducin family protein / WD-40 repeat family protein	[more]
AT3G33530.2	8.8e-30	66.67	Transducin family protein / WD-40 repeat family protein	[more]
AT3G33530.3	8.8e-30	66.67	Transducin family protein / WD-40 repeat family protein	[more]
AT2G26610.1	1.5e-16	46.00	Transducin family protein / WD-40 repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14593:SF7	WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED	coord: 23..122
IPR039694	WD repeat-containing protein 11	PANTHER	PTHR14593	WD REPEAT-CONTAINING PROTEIN 11	coord: 23..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G005320.1	CmoCh11G005320.1	mRNA