CmoCh11G005220 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G005220
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	CCR4-NOT transcription complex subunit 10
Location	Cmo_Chr11: 2540904 .. 2542256 (-)
RNA-Seq Expression	CmoCh11G005220
Synteny	CmoCh11G005220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGGATTTCGTAGTTCAAAATCCTTCACTTTACTTCTACCGCACTAAGAATTTTGAACTTCGAAATTTTAGGGCTTCTTTGTTCTTCTCTTATCCGTCATCTCATTTCCTTTTTGGAACGTGGCCCTTGATTTTGTTTCTTTTATTTGGATCCGTTAATGGACGCTCGAGATTCATCTTCTTCGACCACCCCGAATCGAGATGGGTCCTCATCGGCTGTTGAGGACGATGGTGCTGTTCCCGTCACTGCAGCTCTCGCCAAGGAAGCTGCATCGCTTTTTCAATCGGGGAAGTATGCTGGGTGTGTAGAGGTTTTGAACCAGTTGTTGCAGAAGAAAGAAGACGATCCTAAGGTTCGATTTATGATGCTTAATCTAATTTTGTTGAGTATTTGTACTTGCTGTTGAAGCGATTTAATCTATTCTACGATTTCGTTAGTTCTTTGTGTGCATGTGAAGATGTGGTTTAGACTTTTAATTCTATGATAGTGAAATGTTGAACTCAGAAATAATTTGGGGTGTTTTTTGTTTCCTTTTTTCCCCCCAGCTTAGCGAATGTCAAGATATGAATTATTCAAGGATTACATGCTAGAATCACATGCAATTTCATTGCATCATTTTGCTACACATAGCCTAATTCTGAAAGAACATGCAAGTTGGTGGTGATTTCCAGTGAATGTTATCATTTTCAATGGGTTTTATGATAATTAGATGGAATTTAGGTTCAGGTGCAAGTGTTTCTGTTCGTACATTATTTCATTTCTGTTTATCATTGGTCGCTTTGAATGTTAATTCTTCTAGTCATAAAATTGTTAACTAAACCTCTAACGTTAAGGTGACATGCGTCCAATAGACTTTCCCCAGCAACTGATGGCCCGGAAAATATTTAGGTTTTTAGCAGCTTAATTAACAAGCAACGGTGATCAACGTCATCAAAGGTCCCACAAGCATTTAAGATTGGTTTTACAAAATACGTGACCACTGTATTATCTGCCCATAATCATTCTCATCCCCAGATCCAGTACTTACAATTTCCGGAGCTTTTCATTTTAAAAGCATGAAGACAAATTCCGGGAGGGAGATAATATAATAATGACCCTGCCAAGTGACAATGGTTATGTGAATTTTGTTGTTTTTGTTAGTCTGACCAGTGACCATTCAATAAAACTGCGATCACATTTCACTTTGTAAAAAAAATTGTTGTTTATGGATTTTTGTCAGGTGCTTCATAATATCGCCATTTCTGAATACTTGAGGGATGGTTGTTCCAATCCAAAGAAGTTGCTTGAAGTATTAAACAATGTCAAGGTATGCCCTTAG

mRNA sequence

CTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGGATTTCGTAGTTCAAAATCCTTCACTTTACTTCTACCGCACTAAGAATTTTGAACTTCGAAATTTTAGGGCTTCTTTGTTCTTCTCTTATCCGTCATCTCATTTCCTTTTTGGAACGTGGCCCTTGATTTTGTTTCTTTTATTTGGATCCGTTAATGGACGCTCGAGATTCATCTTCTTCGACCACCCCGAATCGAGATGGGTCCTCATCGGCTGTTGAGGACGATGGTGCTGTTCCCGTCACTGCAGCTCTCGCCAAGGAAGCTGCATCGCTTTTTCAATCGGGGAAGTATGCTGGGTGTGTAGAGGTTTTGAACCAGTTGTTGCAGAAGAAAGAAGACGATCCTAAGGTGCTTCATAATATCGCCATTTCTGAATACTTGAGGGATGGTTGTTCCAATCCAAAGAAGTTGCTTGAAGTATTAAACAATGTCAAGGTATGCCCTTAG

Coding sequence (CDS)

ATGGACGCTCGAGATTCATCTTCTTCGACCACCCCGAATCGAGATGGGTCCTCATCGGCTGTTGAGGACGATGGTGCTGTTCCCGTCACTGCAGCTCTCGCCAAGGAAGCTGCATCGCTTTTTCAATCGGGGAAGTATGCTGGGTGTGTAGAGGTTTTGAACCAGTTGTTGCAGAAGAAAGAAGACGATCCTAAGGTGCTTCATAATATCGCCATTTCTGAATACTTGAGGGATGGTTGTTCCAATCCAAAGAAGTTGCTTGAAGTATTAAACAATGTCAAGGTATGCCCTTAG

Protein sequence

MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKKEDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVKVCP

Homology

[Close]

BLAST of CmoCh11G005220 vs. ExPASy TrEMBL
Match: A0A6J1ERX5 (CCR4-NOT transcription complex subunit 10-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437239 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.0e-42
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
          MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 94

[Close]

BLAST of CmoCh11G005220 vs. ExPASy TrEMBL
Match: A0A6J1HLA5 (CCR4-NOT transcription complex subunit 10-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465199 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.5e-41
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
          MDARDSSSS TPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSATPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 94

[Close]

BLAST of CmoCh11G005220 vs. ExPASy TrEMBL
Match: A0A0A0LWB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G228980 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 7.0e-39
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
          MDARDSSSS+  NRDGSSSAVEDDGA+ +TAALA+EAASLFQSGKY GCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVKVC 97
          EDDPKVLHNIAI+EYLRDGCSNPKKLLEVLNNVKVC
Sbjct: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVC 96

[Close]

BLAST of CmoCh11G005220 vs. ExPASy TrEMBL
Match: A0A5D3C558 (CCR4-NOT transcription complex subunit 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00740 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
          MDARDSSSS+ PNRD SSSAVEDDGA+ +TAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSSAPNRDASSSAVEDDGALSITAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAI+EYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 94

[Close]

BLAST of CmoCh11G005220 vs. ExPASy TrEMBL
Match: A0A5A7U7H5 (CCR4-NOT transcription complex subunit 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001450 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
          MDARDSSSS+ PNRD SSSAVEDDGA+ +TAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSSAPNRDASSSAVEDDGALSITAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAI+EYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 94

[Close]

BLAST of CmoCh11G005220 vs. NCBI nr
Match: KAG6587882.1 (CCR4-NOT transcription complex subunit 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.3 bits (456), Expect = 8.2e-42
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
          MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 94

[Close]

BLAST of CmoCh11G005220 vs. NCBI nr
Match: XP_022930892.1 (CCR4-NOT transcription complex subunit 10-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 180.3 bits (456), Expect = 8.2e-42
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
          MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 94

[Close]

BLAST of CmoCh11G005220 vs. NCBI nr
Match: KAG7021767.1 (CCR4-NOT transcription complex subunit 10 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.3 bits (456), Expect = 8.2e-42
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
          MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 94

[Close]

BLAST of CmoCh11G005220 vs. NCBI nr
Match: XP_022965291.1 (CCR4-NOT transcription complex subunit 10-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 178.3 bits (451), Expect = 3.1e-41
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
          MDARDSSSS TPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSATPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 94

[Close]

BLAST of CmoCh11G005220 vs. NCBI nr
Match: XP_023530176.1 (CCR4-NOT transcription complex subunit 10-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.9 bits (450), Expect = 4.1e-41
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
          MDARDSSSS TPNRDGSSSA+EDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSATPNRDGSSSAIEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 94

[Close]

BLAST of CmoCh11G005220 vs. TAIR 10
Match: AT5G35430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 94.4 bits (233), Expect = 5.5e-20
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 1  MDARDSSSSTTPNRDGSSSAVEDDGAV-PVTAALAKEAASLFQSGKYAGCVEVLNQLLQK 60
          MD+RDS SS    RD SS  + DD AV  VT+ LAK A S FQSGK+  C++VL QL Q 
Sbjct: 1  MDSRDSLSSDAV-RDASS--LSDDAAVLSVTSTLAKTALSYFQSGKFEECIDVLIQLDQM 60

Query: 61 KEDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
          K +DPKVLHN+AI+EY +DGCSN +KL+EVL  VK
Sbjct: 61 KHNDPKVLHNMAIAEYFKDGCSNSEKLVEVLKRVK 92

The following BLAST results are available for this feature:

BLAST of CmoCh11G005220 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G005220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ERX5	4.0e-42	100.00	CCR4-NOT transcription complex subunit 10-like isoform X1 OS=Cucurbita moschata ...	[more]
A0A6J1HLA5	1.5e-41	98.94	CCR4-NOT transcription complex subunit 10-like isoform X1 OS=Cucurbita maxima OX...	[more]
A0A0A0LWB8	7.0e-39	90.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G228980 PE=4 SV=1	[more]
A0A5D3C558	1.2e-38	92.55	CCR4-NOT transcription complex subunit 10 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5A7U7H5	1.2e-38	92.55	CCR4-NOT transcription complex subunit 10 OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of CmoCh11G005220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587882.1	8.2e-42	100.00	CCR4-NOT transcription complex subunit 10, partial [Cucurbita argyrosperma subsp...	[more]
XP_022930892.1	8.2e-42	100.00	CCR4-NOT transcription complex subunit 10-like isoform X1 [Cucurbita moschata]	[more]
KAG7021767.1	8.2e-42	100.00	CCR4-NOT transcription complex subunit 10 [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022965291.1	3.1e-41	98.94	CCR4-NOT transcription complex subunit 10-like isoform X1 [Cucurbita maxima]	[more]
XP_023530176.1	4.1e-41	97.87	CCR4-NOT transcription complex subunit 10-like isoform X1 [Cucurbita pepo subsp....	[more]

BLAST of CmoCh11G005220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35430.1	5.5e-20	60.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
IPR039740	CCR4-NOT transcription complex subunit 10	PANTHER	PTHR12979	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10	coord: 24..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G005220.1	CmoCh11G005220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006402	mRNA catabolic process
biological_process	GO:0017148	negative regulation of translation
cellular_component	GO:0030014	CCR4-NOT complex