CmoCh11G004920 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G004920
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRING-type domain-containing protein
LocationCmo_Chr11: 2374102 .. 2375220 (+)
RNA-Seq ExpressionCmoCh11G004920
SyntenyCmoCh11G004920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAGCTTTAGGCTTCAAGAATGGTATCGCCATAATTTCTTGGTTGGTTGATTGAGACTTCAATTTAATATCATGTATTCCAATTGTTTACTTCAACTCTACTCTGGTAAATTTCTCCGAAGTTTCTCGCTCGCTTCCCTCCTAATTTCTTCCTTCTCTTTCCAATCACTGAACTTAACTACCAATTCCATATCAAACCGATAAAGCCCTAGATCAGTGCAGGAACTTCAGCTTTCAAGGTTTCGCCAAGTTTCTCCCATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTTACATCAAACCAAAGCATGCTCGGATTCACCGCCCATCGTCGCCACTCGGACCTTAACCAGGAAATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGGTTCGTAAATCGCATCTCGACCTGTCAATGAATTAACAAATTATTCATTCGATTGAGGATGATGAACAGAGCTGATTCGATTTATCGTGTTTTTTTTTTCTTTTGCAGCAAGGAAGCCTGCTAGTCGAGGCACAAGAAAACGATAATCTGGACGGAATCGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGGAAATCAGAGGATAAAAGGTACTGAAACAACGGCGTCCGGAACAGCCGCGATGAATTTACATTTCGTTAATTTATTAATCATAAAACCTAAACGAAACACATCCAAAATTACTCTTGTAATCTGCGATTGGATGCAGAGGGATAGCGACGAGAAAGTTCAGTTGGACGAATTGGATCGCCGGCGAGCAAAACAATTGTGGTCAGTGCTGGTGATGAAGACAACTTCATTCCAGTGGCTCCTTCTTCTTCTTCTTCCGCACAGTGCTTGTTTTTATTTATTCAACACAGGATGGGATGATAGCTTTTTTTATTTAGAACTGCTCGTAATTTCCTCCAGATTTTTCGTTAACTCGTGACGAAAAACATTTGTCAATATGTTTTCTGATGTATGAGATGTTAGAATACAGAGATGTTTTTGGTTTATCTGAATGATTCTGCTTATAATTGTTCAGTTCTTCATAACTTTTTTTTTTGTGTGTTCATATTTATCATCC

mRNA sequence

TAAGCTTTAGGCTTCAAGAATGGTATCGCCATAATTTCTTGGTTGGTTGATTGAGACTTCAATTTAATATCATGTATTCCAATTGTTTACTTCAACTCTACTCTGGTAAATTTCTCCGAAGTTTCTCGCTCGCTTCCCTCCTAATTTCTTCCTTCTCTTTCCAATCACTGAACTTAACTACCAATTCCATATCAAACCGATAAAGCCCTAGATCAGTGCAGGAACTTCAGCTTTCAAGGTTTCGCCAAGTTTCTCCCATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTTACATCAAACCAAAGCATGCTCGGATTCACCGCCCATCGTCGCCACTCGGACCTTAACCAGGAAATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGCAAGGAAGCCTGCTAGTCGAGGCACAAGAAAACGATAATCTGGACGGAATCGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGGAAATCAGAGGATAAAAGAGGGATAGCGACGAGAAAGTTCAGTTGGACGAATTGGATCGCCGGCGAGCAAAACAATTGTGGTCAGTGCTGGTGATGAAGACAACTTCATTCCAGTGGCTCCTTCTTCTTCTTCTTCCGCACAGTGCTTGTTTTTATTTATTCAACACAGGATGGGATGATAGCTTTTTTTATTTAGAACTGCTCGTAATTTCCTCCAGATTTTTCGTTAACTCGTGACGAAAAACATTTGTCAATATGTTTTCTGATGTATGAGATGTTAGAATACAGAGATGTTTTTGGTTTATCTGAATGATTCTGCTTATAATTGTTCAGTTCTTCATAACTTTTTTTTTTGTGTGTTCATATTTATCATCC

Coding sequence (CDS)

ATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTTACATCAAACCAAAGCATGCTCGGATTCACCGCCCATCGTCGCCACTCGGACCTTAACCAGGAAATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGCAAGGAAGCCTGCTAGTCGAGGCACAAGAAAACGATAATCTGGACGGAATCGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGGAAATCAGAGGATAAAAGAGGGATAGCGACGAGAAAGTTCAGTTGGACGAATTGGATCGCCGGCGAGCAAAACAATTGTGGTCAGTGCTGGTGA

Protein sequence

MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGSLLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW
Homology
[Close]
BLAST of CmoCh11G004920 vs. ExPASy TrEMBL
Match: A0A6J1EYJ8 (uncharacterized protein LOC111440241 OS=Cucurbita moschata OX=3662 GN=LOC111440241 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.5e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS
Sbjct: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW
Sbjct: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 117

[Close]
BLAST of CmoCh11G004920 vs. ExPASy TrEMBL
Match: A0A6J1KVE5 (uncharacterized protein LOC111498516 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111498516 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.7e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 1   MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 117

[Close]
BLAST of CmoCh11G004920 vs. ExPASy TrEMBL
Match: A0A6J1KVD0 (uncharacterized protein LOC111498516 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498516 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.7e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 32  MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 91

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 92  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 148

[Close]
BLAST of CmoCh11G004920 vs. ExPASy TrEMBL
Match: A0A6J1KZN5 (uncharacterized protein LOC111498516 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498516 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.7e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 21  MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 80

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 81  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 137

[Close]
BLAST of CmoCh11G004920 vs. ExPASy TrEMBL
Match: A0A6J1E1Y4 (uncharacterized protein LOC111430042 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430042 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.3e-35
Identity = 83/119 (69.75%), Postives = 90/119 (75.63%), Query Frame = 0 

Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRR HQ K  SDSP I A + LTR+SVLCLYTSNHETLLASNPSL+ S
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHI-AAQALTRRSVLCLYTSNHETLLASNPSLERS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWT--NWIAGEQNNCGQCW 118
           LL+EA E+D LDG AREAKRRLDERLR     R     K +WT  NW   EQ+ CGQCW
Sbjct: 61  LLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLNWTKLNWTGVEQDKCGQCW 118

[Close]
BLAST of CmoCh11G004920 vs. NCBI nr
Match: XP_022933256.1 (uncharacterized protein LOC111440241 [Cucurbita moschata] >KAG6587853.1 hypothetical protein SDJN03_16418, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021743.1 hypothetical protein SDJN02_15470 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.4 bits (607), Expect = 3.1e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS
Sbjct: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW
Sbjct: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 117

[Close]
BLAST of CmoCh11G004920 vs. NCBI nr
Match: XP_023531367.1 (uncharacterized protein LOC111793636 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.7 bits (600), Expect = 2.0e-58
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKSVLCLYTSNHETLLASNPSLQGS
Sbjct: 1   MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATR+FSWTNWIAGEQNNCGQCW
Sbjct: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRRFSWTNWIAGEQNNCGQCW 117

[Close]
BLAST of CmoCh11G004920 vs. NCBI nr
Match: XP_023005584.1 (uncharacterized protein LOC111498516 isoform X2 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 7.6e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 21  MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 80

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 81  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 137

[Close]
BLAST of CmoCh11G004920 vs. NCBI nr
Match: XP_023005591.1 (uncharacterized protein LOC111498516 isoform X3 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 7.6e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 1   MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 117

[Close]
BLAST of CmoCh11G004920 vs. NCBI nr
Match: XP_023005576.1 (uncharacterized protein LOC111498516 isoform X1 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 7.6e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 32  MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 91

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 92  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 148

[Close]
BLAST of CmoCh11G004920 vs. TAIR 10
Match: AT2G15580.2 (RING/U-box superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 0 

Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTL----------TRKSVLCLYTSNHETL 60
           MAGMLPGVECARRRR H       +PPI ++ T           TR+    LYT+NHE+ 
Sbjct: 1   MAGMLPGVECARRRRFH-----GGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESH 60

Query: 61  LASNPSLQGSLLVEAQENDN---LDGIAREAKRRLDERLR---KSEDKRGIATRKFSWT 104
            A     + S+  ++   DN   LDG A+EAK+RL++RLR   ++   + + T+  +W+
Sbjct: 61  QAHVSFSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLRIPPRTSSGKMVKTKGINWS 114

[Close]
BLAST of CmoCh11G004920 vs. TAIR 10
Match: AT2G15580.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-11
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 0 

Query: 1  MAGMLPGVECARRRRLHQTKACSDSPPIVATRTL----------TRKSVLCLYTSNHETL 60
          MAGMLPGVECARRRR H       +PPI ++ T           TR+    LYT+NHE+ 
Sbjct: 1  MAGMLPGVECARRRRFH-----GGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESH 60

Query: 61 LASNPSLQGSLLVEAQENDN---LDGIAREAKRRLDERLR 88
           A     + S+  ++   DN   LDG A+EAK+RL++RLR
Sbjct: 61 QAHVSFSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLR 95

The following BLAST results are available for this feature:
BLAST of CmoCh11G004920 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G004920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EYJ81.5e-59100.00uncharacterized protein LOC111440241 OS=Cucurbita moschata OX=3662 GN=LOC1114402... [more]
A0A6J1KVE53.7e-5896.58uncharacterized protein LOC111498516 isoform X3 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1KVD03.7e-5896.58uncharacterized protein LOC111498516 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1KZN53.7e-5896.58uncharacterized protein LOC111498516 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1E1Y43.3e-3569.75uncharacterized protein LOC111430042 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of CmoCh11G004920 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022933256.13.1e-59100.00uncharacterized protein LOC111440241 [Cucurbita moschata] >KAG6587853.1 hypothet... [more]
XP_023531367.12.0e-5898.29uncharacterized protein LOC111793636 [Cucurbita pepo subsp. pepo][more]
XP_023005584.17.6e-5896.58uncharacterized protein LOC111498516 isoform X2 [Cucurbita maxima][more]
XP_023005591.17.6e-5896.58uncharacterized protein LOC111498516 isoform X3 [Cucurbita maxima][more]
XP_023005576.17.6e-5896.58uncharacterized protein LOC111498516 isoform X1 [Cucurbita maxima][more]
BLAST of CmoCh11G004920 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G15580.21.5e-1138.66RING/U-box superfamily protein [more]
AT2G15580.14.3e-1144.00RING/U-box superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G004920.1CmoCh11G004920.1mRNA