CmoCh11G004900 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G004900
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr11: 2370767 .. 2371124 (+)
RNA-Seq ExpressionCmoCh11G004900
SyntenyCmoCh11G004900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGTGAAATGATGGGCGGATGTGTGTTCGATGGGAGCATTTCGATGCGTGACTTTTTGATCGAACGAAGGCCTTACCATCGCAACTGTGGCTGCGCATTGCACCATCGCCTCAAAAATGGGGGTTGTCCGCATGCTCTTAACTCCTCTGTTTCCTTTCTCAAAGCTCGGAAATGGACCGATACTTGTCGGCTGCAAATCCAGGCCATGTCCGAGTTCTCCGCCCATGCTGCTCCTACCTCTCTTCTTCACGACCTTTCTTCCGGTATATGTGCTAATGAAGTTTCAATTTGTTCAGAGAATTAATTCCTTCTTTTCTTTGCATTTAGTCTCTAGTTACTCTCTACTTATGTGA

mRNA sequence

ATGGGAGGTGAAATGATGGGCGGATGTGTGTTCGATGGGAGCATTTCGATGCGTGACTTTTTGATCGAACGAAGGCCTTACCATCGCAACTGTGGCTGCGCATTGCACCATCGCCTCAAAAATGGGGGTTGTCCGCATGCTCTTAACTCCTCTGTTTCCTTTCTCAAAGCTCGGAAATGGACCGATACTTGTCGGCTGCAAATCCAGGCCATGTCCGAGTTCTCCGCCCATGCTGCTCCTACCTCTCTTCTTCACGACCTTTCTTCCGTCTCTAGTTACTCTCTACTTATGTGA

Coding sequence (CDS)

ATGGGAGGTGAAATGATGGGCGGATGTGTGTTCGATGGGAGCATTTCGATGCGTGACTTTTTGATCGAACGAAGGCCTTACCATCGCAACTGTGGCTGCGCATTGCACCATCGCCTCAAAAATGGGGGTTGTCCGCATGCTCTTAACTCCTCTGTTTCCTTTCTCAAAGCTCGGAAATGGACCGATACTTGTCGGCTGCAAATCCAGGCCATGTCCGAGTTCTCCGCCCATGCTGCTCCTACCTCTCTTCTTCACGACCTTTCTTCCGTCTCTAGTTACTCTCTACTTATGTGA

Protein sequence

MGGEMMGGCVFDGSISMRDFLIERRPYHRNCGCALHHRLKNGGCPHALNSSVSFLKARKWTDTCRLQIQAMSEFSAHAAPTSLLHDLSSVSSYSLLM
Homology
BLAST of CmoCh11G004900 vs. ExPASy TrEMBL
Match: A0A5A7U781 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00690 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = 0

Query: 1   MGGEMMGGCVFDGSISMRDFLIERRPYHRNCGCALH-HRLKNG-GCPHA--LNSSVSFLK 60
           MGG ++G CVFDGS+SM+DFLIERRPYHRNCGCALH  R +NG  C HA  L +SVSFLK
Sbjct: 61  MGG-VVGSCVFDGSLSMQDFLIERRPYHRNCGCALHDDRFRNGAACSHAMKLKNSVSFLK 120

Query: 61  ARKWTDTCRLQIQAMSEFSA 77
            +K   T    +++ S+ S+
Sbjct: 121 TQKCPITSLQILRSSSKVSS 139

BLAST of CmoCh11G004900 vs. ExPASy TrEMBL
Match: A0A6J5VI32 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS46996 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.3e-12
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 0

Query: 5  MMGGCVFDGSISMRDFLIERRPYHRNCGCALHHRLKNGGCPHALNSSVSFLKARKWTDTC 64
          MM  CVF+GS+SMRD  IERRPYH+NC CAL H+ K G C +A   ++SF K + W+D  
Sbjct: 9  MMFQCVFEGSLSMRDTEIERRPYHKNCSCAL-HKSKEGACSNACQRNISFPKKQSWSDG- 68

Query: 65 RLQIQAMSEFSAHAAPTSLLHDLSSVSSYS 95
           L +QA S  S  ++P  LL D+S+ +S S
Sbjct: 69 SLCLQAASASSKFSSP--LLGDMSTSTSTS 94

BLAST of CmoCh11G004900 vs. ExPASy TrEMBL
Match: A0A6J5Y6G4 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS46999 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.6e-12
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 5  MMGGCVFDGSISMRDFLIERRPYHRNCGCALHHRLKNGGCPHALNSSVSFLKARKWTD-T 64
          MM  CVF+GS+SMRD  IERRPYH+NC CAL H+ K G C +A   ++SF K   W+D +
Sbjct: 9  MMFQCVFEGSLSMRDTEIERRPYHKNCSCAL-HKSKGGACSNACQRNISFPKKHSWSDGS 68

Query: 65 CRLQIQAMSEFSAHAAPTSLLHDLSSVSSYS 95
            +Q+ A S+FS     + L+ D+S+ SS S
Sbjct: 69 LCMQVAASSKFS-----SPLVGDMSTSSSTS 93

BLAST of CmoCh11G004900 vs. ExPASy TrEMBL
Match: A0A6J5Y3S0 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS46280 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.6e-12
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 0

Query: 5  MMGGCVFDGSISMRDFLIERRPYHRNCGCALHHRLKNGGCPHALNSSVSFLKARKWTDTC 64
          MM  CVF+GS+SMRD  IERRPYH+NC CAL H+ K G C +A   ++SF K + W+D  
Sbjct: 9  MMFQCVFEGSLSMRDTEIERRPYHKNCSCAL-HKSKEGACSNACQRNISFPKKQSWSDG- 68

Query: 65 RLQIQAMSEFSAHAAPTSLLHDLSSVSSYS 95
           L +QA S  S  ++P  LL D+S+ +S S
Sbjct: 69 SLCMQAASASSKFSSP--LLGDMSTSTSTS 94

BLAST of CmoCh11G004900 vs. ExPASy TrEMBL
Match: A0A498HU65 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029031 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 0

Query: 5   MMGGCVFDGSISMRDFLIERRPYHRNCGCALHHRLKNGGCPHALNSSVSFLKARKWTD-T 64
           MM  CVF+GS+SM+D  I RRPYH+NC CALH +    GCP+A   ++SF K + W+D +
Sbjct: 127 MMFQCVFEGSLSMQDTEIGRRPYHKNCSCALHSKADASGCPNACQRNISFPKKQSWSDSS 186

Query: 65  CRLQIQAMSEFSAH 78
             +   A S+FS H
Sbjct: 187 LSMMAAATSKFSRH 200

BLAST of CmoCh11G004900 vs. NCBI nr
Match: KAG6587851.1 (hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.7 bits (483), Expect = 6.1e-45
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0

Query: 1  MGGEMMGGCVFDGSISMRDFLIERRPYHRNCGCALHHRLKNGGCPHALNSSVSFLKARKW 60
          MGGEMMGGCVFDGSISMRDFLIERRPYHRNCGCALHHRLKNGGCPHALNSSVSFLKARKW
Sbjct: 1  MGGEMMGGCVFDGSISMRDFLIERRPYHRNCGCALHHRLKNGGCPHALNSSVSFLKARKW 60

Query: 61 TDTCRLQIQAMSEFSAHAAPTSLLHDLSS 90
          TDTCRLQIQAMSEFSAHAAPTSLLHDLSS
Sbjct: 61 TDTCRLQIQAMSEFSAHAAPTSLLHDLSS 89

BLAST of CmoCh11G004900 vs. NCBI nr
Match: XP_023531633.1 (uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.4 bits (459), Expect = 3.7e-42
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0

Query: 1  MGGEMMGGCVFDGSISMRDFLIERRPYHRNCGCALHHRLKNGGCPHALNSSVSFLKARKW 60
          MGGE+MGGCVFDGSISM DFLIERRPYHRNCGCALHHR KNGGCPHALN+SVSFLKARKW
Sbjct: 1  MGGEVMGGCVFDGSISMHDFLIERRPYHRNCGCALHHRAKNGGCPHALNTSVSFLKARKW 60

Query: 61 TDTCRLQIQAMSEFSAHAAPTSLLHDLSS 90
          TDTCRLQIQAMSEFSAHAAPTSLLH LSS
Sbjct: 61 TDTCRLQIQAMSEFSAHAAPTSLLHHLSS 89

BLAST of CmoCh11G004900 vs. NCBI nr
Match: XP_023531631.1 (uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.4 bits (459), Expect = 3.7e-42
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 0

Query: 1  MGGEMMGGCVFDGSISMRDFLIERRPYHRNCGCALHHRLKNGGCPHALNSSVSFLKARKW 60
          MGGE+MGGCVFDGSISM DFLIERRPYHRNCGCALHHR KNGGCPHALN+SVSFLKARKW
Sbjct: 1  MGGEVMGGCVFDGSISMHDFLIERRPYHRNCGCALHHRAKNGGCPHALNTSVSFLKARKW 60

Query: 61 TDTCRLQIQAMSEFSAHAAPTSLLHDLSSVSS 93
          TDTCRLQIQAMSEFSAHAAPTSLLH LSS +S
Sbjct: 61 TDTCRLQIQAMSEFSAHAAPTSLLHHLSSDAS 92

BLAST of CmoCh11G004900 vs. NCBI nr
Match: KAA0050036.1 (hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa] >TYK03640.1 hypothetical protein E5676_scaffold1369G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-13
Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = 0

Query: 1   MGGEMMGGCVFDGSISMRDFLIERRPYHRNCGCALH-HRLKNG-GCPHA--LNSSVSFLK 60
           MGG ++G CVFDGS+SM+DFLIERRPYHRNCGCALH  R +NG  C HA  L +SVSFLK
Sbjct: 61  MGG-VVGSCVFDGSLSMQDFLIERRPYHRNCGCALHDDRFRNGAACSHAMKLKNSVSFLK 120

Query: 61  ARKWTDTCRLQIQAMSEFSA 77
            +K   T    +++ S+ S+
Sbjct: 121 TQKCPITSLQILRSSSKVSS 139

BLAST of CmoCh11G004900 vs. NCBI nr
Match: CAB4288759.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 80.5 bits (197), Expect = 8.9e-12
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 0

Query: 5  MMGGCVFDGSISMRDFLIERRPYHRNCGCALHHRLKNGGCPHALNSSVSFLKARKWTDTC 64
          MM  CVF+GS+SMRD  IERRPYH+NC CAL H+ K G C +A   ++SF K + W+D  
Sbjct: 9  MMFQCVFEGSLSMRDTEIERRPYHKNCSCAL-HKSKEGACSNACQRNISFPKKQSWSDG- 68

Query: 65 RLQIQAMSEFSAHAAPTSLLHDLSSVSSYS 95
           L +QA S  S  ++P  LL D+S+ +S S
Sbjct: 69 SLCLQAASASSKFSSP--LLGDMSTSTSTS 94

BLAST of CmoCh11G004900 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 4.7e-11
Identity = 39/91 (42.86%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 10 VFDGSISMRDFLIERRPYHRNCGCALHHRLKNGG----CPHALNSSVSFLKARKWTDTCR 69
          +F+G IS  D  I+RRPYH+NCGCALH R + GG    C H  +  V F   R W++   
Sbjct: 13 IFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQRSWSEGNS 72

Query: 70 LQIQAMSEFSAHAAPTSLLHDLSSVSSYSLL 97
          L +   S  S     +S L  LSS SS S L
Sbjct: 73 LALHLASSSS-----SSNLQSLSSSSSISTL 98

BLAST of CmoCh11G004900 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.5 bits (145), Expect = 8.8e-10
Identity = 41/98 (41.84%), Postives = 54/98 (55.10%), Query Frame = 0

Query: 10  VFDGSISMRDFLIERRPYHRNCGCALHHRLKNGG----------C-PHALNSSVSFLKAR 69
           +F+G IS  D  IERRPYH+NCGCALH +    G          C  H  + S+SF   R
Sbjct: 10  IFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSSESISFPIRR 69

Query: 70  KWTDTCRLQIQAMSEFSAHAAPTSLLHDLSSVSSYSLL 97
            W++     I AM+ FS+ ++ +S L  LSS SS S L
Sbjct: 70  SWSEG---NIMAMNLFSS-SSSSSNLQSLSSSSSLSNL 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U7811.3e-1358.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J5VI324.3e-1250.00Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS46996 PE=4 S... [more]
A0A6J5Y6G45.6e-1248.35Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS46999 PE=4 S... [more]
A0A6J5Y3S05.6e-1250.00Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS46280 PE=... [more]
A0A498HU651.2e-1148.65Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029031 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6587851.16.1e-45100.00hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023531633.13.7e-4294.38uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023531631.13.7e-4292.39uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo][more]
KAA0050036.12.8e-1358.75hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa] >TYK0364... [more]
CAB4288759.18.9e-1250.00unnamed protein product [Prunus armeniaca][more]
Match NameE-valueIdentityDescription
AT5G35110.14.7e-1142.86unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G46490.18.8e-1041.84unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35121HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATEDcoord: 3..81
NoneNo IPR availablePANTHERPTHR35121:SF8SUBFAMILY NOT NAMEDcoord: 3..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G004900.1CmoCh11G004900.1mRNA