CmoCh11G004900 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGGTGAAATGATGGGCGGATGTGTGTTCGATGGGAGCATTTCGATGCGTGACTTTTTGATCGAACGAAGGCCTTACCATCGCAACTGTGGCTGCGCATTGCACCATCGCCTCAAAAATGGGGGTTGTCCGCATGCTCTTAACTCCTCTGTTTCCTTTCTCAAAGCTCGGAAATGGACCGATACTTGTCGGCTGCAAATCCAGGCCATGTCCGAGTTCTCCGCCCATGCTGCTCCTACCTCTCTTCTTCACGACCTTTCTTCCGGTATATGTGCTAATGAAGTTTCAATTTGTTCAGAGAATTAATTCCTTCTTTTCTTTGCATTTAGTCTCTAGTTACTCTCTACTTATGTGA ATGGGAGGTGAAATGATGGGCGGATGTGTGTTCGATGGGAGCATTTCGATGCGTGACTTTTTGATCGAACGAAGGCCTTACCATCGCAACTGTGGCTGCGCATTGCACCATCGCCTCAAAAATGGGGGTTGTCCGCATGCTCTTAACTCCTCTGTTTCCTTTCTCAAAGCTCGGAAATGGACCGATACTTGTCGGCTGCAAATCCAGGCCATGTCCGAGTTCTCCGCCCATGCTGCTCCTACCTCTCTTCTTCACGACCTTTCTTCCGTCTCTAGTTACTCTCTACTTATGTGA ATGGGAGGTGAAATGATGGGCGGATGTGTGTTCGATGGGAGCATTTCGATGCGTGACTTTTTGATCGAACGAAGGCCTTACCATCGCAACTGTGGCTGCGCATTGCACCATCGCCTCAAAAATGGGGGTTGTCCGCATGCTCTTAACTCCTCTGTTTCCTTTCTCAAAGCTCGGAAATGGACCGATACTTGTCGGCTGCAAATCCAGGCCATGTCCGAGTTCTCCGCCCATGCTGCTCCTACCTCTCTTCTTCACGACCTTTCTTCCGTCTCTAGTTACTCTCTACTTATGTGA MGGEMMGGCVFDGSISMRDFLIERRPYHRNCGCALHHRLKNGGCPHALNSSVSFLKARKWTDTCRLQIQAMSEFSAHAAPTSLLHDLSSVSSYSLLM Homology
BLAST of CmoCh11G004900 vs. ExPASy TrEMBL
Match: A0A5A7U781 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00690 PE=4 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13 Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = 0
BLAST of CmoCh11G004900 vs. ExPASy TrEMBL
Match: A0A6J5VI32 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS46996 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 4.3e-12 Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 0
BLAST of CmoCh11G004900 vs. ExPASy TrEMBL
Match: A0A6J5Y6G4 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS46999 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 5.6e-12 Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 0
BLAST of CmoCh11G004900 vs. ExPASy TrEMBL
Match: A0A6J5Y3S0 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS46280 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 5.6e-12 Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 0
BLAST of CmoCh11G004900 vs. ExPASy TrEMBL
Match: A0A498HU65 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029031 PE=4 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11 Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 0
BLAST of CmoCh11G004900 vs. NCBI nr
Match: KAG6587851.1 (hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 190.7 bits (483), Expect = 6.1e-45 Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0
BLAST of CmoCh11G004900 vs. NCBI nr
Match: XP_023531633.1 (uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 181.4 bits (459), Expect = 3.7e-42 Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0
BLAST of CmoCh11G004900 vs. NCBI nr
Match: XP_023531631.1 (uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 181.4 bits (459), Expect = 3.7e-42 Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 0
BLAST of CmoCh11G004900 vs. NCBI nr
Match: KAA0050036.1 (hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa] >TYK03640.1 hypothetical protein E5676_scaffold1369G00690 [Cucumis melo var. makuwa]) HSP 1 Score: 85.5 bits (210), Expect = 2.8e-13 Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = 0
BLAST of CmoCh11G004900 vs. NCBI nr
Match: CAB4288759.1 (unnamed protein product [Prunus armeniaca]) HSP 1 Score: 80.5 bits (197), Expect = 8.9e-12 Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 0
BLAST of CmoCh11G004900 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 64.7 bits (156), Expect = 4.7e-11 Identity = 39/91 (42.86%), Postives = 49/91 (53.85%), Query Frame = 0
BLAST of CmoCh11G004900 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 60.5 bits (145), Expect = 8.8e-10 Identity = 41/98 (41.84%), Postives = 54/98 (55.10%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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