CmoCh11G004100 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G004100
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr11: 2017679 .. 2018074 (-)
RNA-Seq Expression	CmoCh11G004100
Synteny	CmoCh11G004100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGAAAACGAGCGGTTCATTACTATGAGATGACGGAACTGGAAGTTCCTTTGAGTTGCAACAAACCCAAGTTGGGCAAGCCCGGCGCCAAAAGAGCCTCCACCAATCGACATGGGGCGGAGAAAACTACAACCACGGTCTACAAAAATGAACTTCCTGGTGGTTTAACTGTACAGGTCTCCAAGAGGCATAAGGTCAAGGAATTTGTGGACAACAACACCGGACGTTTGAGTTCCAAAGAAGAGGTTACTTATAAGTCTAGTTTCAAAGTGGATAATGCAGTTCAAGGAATTTTCAATGAGGTTCAAACTCAAGTGAAGTTTAACAAGGCTCCAAGTTCTAGCAACAATTCCACCAAACCCACTAATAAGCATATCATGTTTGACTTCTAG

mRNA sequence

ATGGGAGGAAAACGAGCGGTTCATTACTATGAGATGACGGAACTGGAAGTTCCTTTGAGTTGCAACAAACCCAAGTTGGGCAAGCCCGGCGCCAAAAGAGCCTCCACCAATCGACATGGGGCGGAGAAAACTACAACCACGGTCTACAAAAATGAACTTCCTGGTGGTTTAACTGTACAGGTCTCCAAGAGGCATAAGGTCAAGGAATTTGTGGACAACAACACCGGACGTTTGAGTTCCAAAGAAGAGGTTACTTATAAGTCTAGTTTCAAAGTGGATAATGCAGTTCAAGGAATTTTCAATGAGGTTCAAACTCAAGTGAAGTTTAACAAGGCTCCAAGTTCTAGCAACAATTCCACCAAACCCACTAATAAGCATATCATGTTTGACTTCTAG

Coding sequence (CDS)

ATGGGAGGAAAACGAGCGGTTCATTACTATGAGATGACGGAACTGGAAGTTCCTTTGAGTTGCAACAAACCCAAGTTGGGCAAGCCCGGCGCCAAAAGAGCCTCCACCAATCGACATGGGGCGGAGAAAACTACAACCACGGTCTACAAAAATGAACTTCCTGGTGGTTTAACTGTACAGGTCTCCAAGAGGCATAAGGTCAAGGAATTTGTGGACAACAACACCGGACGTTTGAGTTCCAAAGAAGAGGTTACTTATAAGTCTAGTTTCAAAGTGGATAATGCAGTTCAAGGAATTTTCAATGAGGTTCAAACTCAAGTGAAGTTTAACAAGGCTCCAAGTTCTAGCAACAATTCCACCAAACCCACTAATAAGCATATCATGTTTGACTTCTAG

Protein sequence

MGGKRAVHYYEMTELEVPLSCNKPKLGKPGAKRASTNRHGAEKTTTTVYKNELPGGLTVQVSKRHKVKEFVDNNTGRLSSKEEVTYKSSFKVDNAVQGIFNEVQTQVKFNKAPSSSNNSTKPTNKHIMFDF

Homology

[Close]

BLAST of CmoCh11G004100 vs. ExPASy TrEMBL
Match: A0A5A7UT05 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006480 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.8e-30
Identity = 82/134 (61.19%), Postives = 95/134 (70.90%), Query Frame = 0


Query: 1   MGGKRAVHYYEMTELEVPLSCNKPKLGKPGAKRASTNRHGAEKTTTTVYKNELPGGLTVQ 60
           MGGKRA+H     +L VPL C+KP       K+ STN+ G EKT TTV K E+ GG +V+
Sbjct: 1   MGGKRAIH--TSLKLPVPLGCSKP-------KKHSTNQRGMEKTITTVNKYEVVGGSSVE 60

Query: 61  VSKRHKVKEFVDNNTGRLSSKEEVTYKSSFKVDNAVQGIFNEVQTQVKFNKA-PSS--SN 120
            SKR KVKEFVD NTGRLSSKEEVTYK S KVD+   G  +EVQTQVKF K  P+S  +N
Sbjct: 61  FSKRQKVKEFVDKNTGRLSSKEEVTYKCSMKVDDGAHGFVDEVQTQVKFKKVIPTSAKNN 120

Query: 121 NSTKPTNKHIMFDF 132
           +S K TNKHIMFDF
Sbjct: 121 SSMKATNKHIMFDF 125

[Close]

BLAST of CmoCh11G004100 vs. ExPASy TrEMBL
Match: A0A5D3CE69 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00950 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.4e-29
Identity = 81/134 (60.45%), Postives = 94/134 (70.15%), Query Frame = 0


Query: 1   MGGKRAVHYYEMTELEVPLSCNKPKLGKPGAKRASTNRHGAEKTTTTVYKNELPGGLTVQ 60
           MGGKRA+H     +L VPL C+KP       K+ STN+ G EKT TTV K E+ GG +V+
Sbjct: 1   MGGKRAIH--TSLKLPVPLGCSKP-------KKHSTNQRGMEKTITTVNKYEVVGGSSVE 60

Query: 61  VSKRHKVKEFVDNNTGRLSSKEEVTYKSSFKVDNAVQGIFNEVQTQVKFNKA-PSS--SN 120
            SKR KVKEFVD NTGRLSSKEEVTYK S KVD+   G  +EVQTQVKF K  P+S  +N
Sbjct: 61  FSKRQKVKEFVDKNTGRLSSKEEVTYKCSMKVDDGAHGFVDEVQTQVKFKKVIPTSAKNN 120

Query: 121 NSTKPTNKHIMFDF 132
           +S K TNKHIM DF
Sbjct: 121 SSMKATNKHIMLDF 125

[Close]

BLAST of CmoCh11G004100 vs. ExPASy TrEMBL
Match: A0A7N2KV08 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 27  GKPGAKRASTNRHGAEKTTTTVYKNELPGGLTVQVSKRHKVKEFVDNNTGRLSSKEEVTY 86
           G    KR        EK++ T+YK++     + Q +K HK +EFVD ++GRL  KE+VTY
Sbjct: 18  GGSSNKRKMNESSELEKSSRTIYKDK-HSAYSEQFTKHHKAEEFVDKDSGRLGFKEQVTY 77

Query: 87  KSSFKVDNAVQGIFNEVQTQVKFNKAPSSSNNSTKPT-NKHIMFD 131
           KS+ KV++ VQG   E +TQVKF K      +++K   N  I +D
Sbjct: 78  KSTHKVNDKVQGSTTEYETQVKFKKTVYPKKSASKCNYNNAIYYD 121

[Close]

BLAST of CmoCh11G004100 vs. ExPASy TrEMBL
Match: A0A7N2R0B6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.8e-06
Identity = 35/97 (36.08%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 31  AKRASTNRHGAEKTTTTVYKNELPGGLTVQVSKRHKVKEFVDNNTGRLSSKEEVTYKSSF 90
           +KR        + ++  +YK+    G + + +++HK +EFVD ++GRL  KEE+ Y S+ 
Sbjct: 70  SKRMENESSEMQSSSRMIYKDNY-SGCSSKFTEQHKAEEFVDKHSGRLGYKEELKYTSTN 129

Query: 91  KVDNAVQGIFNEVQTQVKFNKAPSSSNNSTKPTNKHI 128
           KV++ VQG   E +TQVKF K    + +++K  NK I
Sbjct: 130 KVNDKVQGYTTEYETQVKFKKTVYPNKSTSKYNNKGI 165

[Close]

BLAST of CmoCh11G004100 vs. ExPASy TrEMBL
Match: A0A2N9HDM1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37897 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.1e-05
Identity = 35/100 (35.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 30  GAKRASTNRHGAEKTTTTVYKNELPGGLTVQVSKRHKVKEFVDNNTGRLSSKEEVTYKSS 89
           G+KR     +  + ++ T+YK+    G +   S +HK +EFVD ++GRL  KEEV + S+
Sbjct: 21  GSKRMVNESNEVQSSSRTMYKDNY-SGCSNHYSTQHKAEEFVDKHSGRLGFKEEVKFTST 80

Query: 90  FKVDNAVQGIFNEVQTQVKFNKAPSSSNNSTKPTNKHIMF 130
            KV + VQ    E +TQV+F K    +  + K  N  I +
Sbjct: 81  QKVVDKVQDYTTEYKTQVQFKKTVYPNKTTPKSNNNRINY 119

[Close]

BLAST of CmoCh11G004100 vs. NCBI nr
Match: KAG6587772.1 (hypothetical protein SDJN03_16337, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 254.6 bits (649), Expect = 4.6e-64
Identity = 127/131 (96.95%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   MGGKRAVHYYEMTELEVPLSCNKPKLGKPGAKRASTNRHGAEKTTTTVYKNELPGGLTVQ 60
           MGGKRAVHYYEMTELEVPLSCNKPKL KPGAKRASTNR GAEKTTTTVYKNELPGGLTVQ
Sbjct: 113 MGGKRAVHYYEMTELEVPLSCNKPKLAKPGAKRASTNRRGAEKTTTTVYKNELPGGLTVQ 172

Query: 61  VSKRHKVKEFVDNNTGRLSSKEEVTYKSSFKVDNAVQGIFNEVQTQVKFNKAPSSSNNST 120
           VSKRHKVKEFVDNN+GRLSSKEEVTYKSSFKVDNAVQGIFNEVQTQVKF KAPSSSNNST
Sbjct: 173 VSKRHKVKEFVDNNSGRLSSKEEVTYKSSFKVDNAVQGIFNEVQTQVKFKKAPSSSNNST 232

Query: 121 KPTNKHIMFDF 132
           KPTNKHIMFDF
Sbjct: 233 KPTNKHIMFDF 243

[Close]

BLAST of CmoCh11G004100 vs. NCBI nr
Match: KAA0058314.1 (hypothetical protein E6C27_scaffold274G006480 [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 5.7e-30
Identity = 82/134 (61.19%), Postives = 95/134 (70.90%), Query Frame = 0


Query: 1   MGGKRAVHYYEMTELEVPLSCNKPKLGKPGAKRASTNRHGAEKTTTTVYKNELPGGLTVQ 60
           MGGKRA+H     +L VPL C+KP       K+ STN+ G EKT TTV K E+ GG +V+
Sbjct: 1   MGGKRAIH--TSLKLPVPLGCSKP-------KKHSTNQRGMEKTITTVNKYEVVGGSSVE 60

Query: 61  VSKRHKVKEFVDNNTGRLSSKEEVTYKSSFKVDNAVQGIFNEVQTQVKFNKA-PSS--SN 120
            SKR KVKEFVD NTGRLSSKEEVTYK S KVD+   G  +EVQTQVKF K  P+S  +N
Sbjct: 61  FSKRQKVKEFVDKNTGRLSSKEEVTYKCSMKVDDGAHGFVDEVQTQVKFKKVIPTSAKNN 120

Query: 121 NSTKPTNKHIMFDF 132
           +S K TNKHIMFDF
Sbjct: 121 SSMKATNKHIMFDF 125

[Close]

BLAST of CmoCh11G004100 vs. NCBI nr
Match: TYK09494.1 (hypothetical protein E5676_scaffold499G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 2.8e-29
Identity = 81/134 (60.45%), Postives = 94/134 (70.15%), Query Frame = 0


Query: 1   MGGKRAVHYYEMTELEVPLSCNKPKLGKPGAKRASTNRHGAEKTTTTVYKNELPGGLTVQ 60
           MGGKRA+H     +L VPL C+KP       K+ STN+ G EKT TTV K E+ GG +V+
Sbjct: 1   MGGKRAIH--TSLKLPVPLGCSKP-------KKHSTNQRGMEKTITTVNKYEVVGGSSVE 60

Query: 61  VSKRHKVKEFVDNNTGRLSSKEEVTYKSSFKVDNAVQGIFNEVQTQVKFNKA-PSS--SN 120
            SKR KVKEFVD NTGRLSSKEEVTYK S KVD+   G  +EVQTQVKF K  P+S  +N
Sbjct: 61  FSKRQKVKEFVDKNTGRLSSKEEVTYKCSMKVDDGAHGFVDEVQTQVKFKKVIPTSAKNN 120

Query: 121 NSTKPTNKHIMFDF 132
           +S K TNKHIM DF
Sbjct: 121 SSMKATNKHIMLDF 125

[Close]

BLAST of CmoCh11G004100 vs. NCBI nr
Match: KAF3944350.1 (hypothetical protein CMV_029177 [Castanea mollissima])

HSP 1 Score: 68.6 bits (166), Expect = 4.7e-08
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 27  GKPGAKRASTNRHGAEKTTTTVYKNELPGGLTVQVSKRHKVKEFVDNNTGRLSSKEEVTY 86
           G    KR        EK++  +YK++  G  + Q +K HK +EFVD ++GRL  KE+VTY
Sbjct: 18  GGSSNKRKVNESSDLEKSSRIIYKDK-HGAYSEQFTKHHKAEEFVDKHSGRLGFKEQVTY 77

Query: 87  KSSFKVDNAVQGIFNEVQTQVKFNKA--PSSSNNSTKPT-NKHIMFD 131
           KS+ KV++ VQG   E +TQVKF K   P+ S + +K   N  I +D
Sbjct: 78  KSTHKVNDKVQGSTTEYETQVKFKKTVYPNKSASKSKCNYNNAIYYD 123

[Close]

BLAST of CmoCh11G004100 vs. NCBI nr
Match: XP_030956139.1 (uncharacterized protein LOC115978256 [Quercus lobata] >XP_030956140.1 uncharacterized protein LOC115978256 [Quercus lobata])

HSP 1 Score: 68.2 bits (165), Expect = 6.1e-08
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 27  GKPGAKRASTNRHGAEKTTTTVYKNELPGGLTVQVSKRHKVKEFVDNNTGRLSSKEEVTY 86
           G    KR        EK++ T+YK++     + Q +K HK +EFVD ++GRL  KE+VTY
Sbjct: 18  GGSSNKRKMNESSELEKSSRTIYKDK-HSAYSEQFTKHHKAEEFVDKDSGRLGFKEQVTY 77

Query: 87  KSSFKVDNAVQGIFNEVQTQVKFNKAPSSSNNSTKPT-NKHIMFD 131
           KS+ KV++ VQG   E +TQVKF K      +++K   N  I +D
Sbjct: 78  KSTHKVNDKVQGSTTEYETQVKFKKTVYPKKSASKCNYNNAIYYD 121

The following BLAST results are available for this feature:

BLAST of CmoCh11G004100 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G004100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UT05	2.8e-30	61.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CE69	1.4e-29	60.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A7N2KV08	3.0e-08	40.00	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7N2R0B6	2.8e-06	36.08	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2N9HDM1	3.1e-05	35.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37897 PE=4 SV=1	[more]

BLAST of CmoCh11G004100 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587772.1	4.6e-64	96.95	hypothetical protein SDJN03_16337, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0058314.1	5.7e-30	61.19	hypothetical protein E6C27_scaffold274G006480 [Cucumis melo var. makuwa]	[more]
TYK09494.1	2.8e-29	60.45	hypothetical protein E5676_scaffold499G00950 [Cucumis melo var. makuwa]	[more]
KAF3944350.1	4.7e-08	41.12	hypothetical protein CMV_029177 [Castanea mollissima]	[more]
XP_030956139.1	6.1e-08	40.00	uncharacterized protein LOC115978256 [Quercus lobata] >XP_030956140.1 uncharacte...	[more]

BLAST of CmoCh11G004100 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G004100.1	CmoCh11G004100.1	mRNA