CmoCh11G003460 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G003460
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr11: 1696213 .. 1700807 (+)
RNA-Seq ExpressionCmoCh11G003460
SyntenyCmoCh11G003460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGTTAGATCTTGTTGTGATATCCATCCAGACACTGATGGAGTTTGCTGTCAACAACAGCTAATTGAAAACAACAAGAAATGTGTTCACGGTACGGCTTTGTTCTTTGTCTTTCTTTCTTGTTTTTATGCTTGTTCTAGAGATTTCGTTTTATATTATAAGAATAGAGGAGACTCAAATCTATTGGAGTATATTATTATTTCATTTTTGTTAGGAGTCAAAATATATCTTCAATTTAAGTAAGAGAAAGAGAAGAAAAACAGAGGTGGGACAGAGACCTGGCGGTGGTGGTAGTGTCAATGCCAATGCATTGACCGAAAACACAGACGAGATTGGGTCAAAATACAGAATTCCAAAGGCTTTGACCAATCGTTTTGATGTTTGGAAAAAGAAAGTCAACATGAATGTCAAATCCAAGATTGTTAAAGAGGAATTGAACCGTGAGTTACACTCCTTTTCTTAATCATACGTTTTTTTATTAGAACGTCAATCCCAATTAATTACCCAAAAAAACACAACCAAATCATTCTCTTTCTCTTTCTCTCTCATGTTCTGTTCACCAAAACCAAAGTTGTCTTGTTCACTACCTGTTTGTCTTTTTTCCTCTTAGGATCTTGAGAGTTGAAAATTGGGCTTTTTGAATCAGCGCCCGCGTAGGAGAAGCTCAAACCCATCACAGGACGAGAGAAAAATCAAGGTAAATTACTCATTTTTCTTCAAGTTTTGTGTCTATCTGATTCATGGCCTTTTAGTTTTGTGGCATTTAGATGATCAAACGTTAAAATATTTTCTGAAGTTCACAAGATCGATCAACTTTAAACTTGGAAATTCAACTACTTCTGAACTTATAATATAATGGATAAAAAAAGAGCTTGAAATGTAGAGAGAGAAACAGAGAGTAAATGGGAAAAGAAAGTTTTTATTGGAAAGTAGTTTGGAAAATTGAATGCACACTGTCCATAGTTGTTTGTCAGCTGCTGCTACAAAAAAAAAAAAAAAAAAAAAAAACGAAGAACAGCCCAATATTCAATTCCCTTTCTGTTCACCAAGTAGAATTCCTAATTTTTCGTTTGCCTTTCTGACCCATTTCAATTCAATGCCCTTTCCCAAATCTGGGATGTGCGTATCATATTGGTGGGATTTCATTTTCCTCTCTCTCTCTCTCTCTCTCTTCATATTTTCTTTCTCCTTAAAGCTTCCATCTCTCTATTTACCTTGTTGCCATCACCTTGAATTGGAAACCTCAATCAAATTTCATGCATCTTGTTGGGTTGCTTTCACCCATTCCATTCAAGTGATTACAGTTGTGTGTGTGATAATATCATCTCTAATGGGTTTAAACTCTTTACTCTTTCCTTGTAAAGTTTGAGCCTTTTTGACTTGAAACAAATGGGGACAAGAAAACATCTAATGGGGTTGAGTTTGAAGAGCTTTTGATTTCACTGACATAAAAGTTAGGCTATATCAACAAAAGAAATTAGAACAAACTCAAGGCAAAACAAAGCTTAAGACATACAATAATAATATGATCTTAGTTTCTTCTACTTATTGTGAAGTGGGTTAGGGCCAGTAGGAACAACCCTTTTCTCCTCAGAACTACTGGTAGCATTATTGATCATCTTCTCAGAGCTTGAGAAGAAGCACTCACAACAATACAGCTTCTTTGACTTGCACCTTCTGCTACTCTCCATGGCAATCGTCAAGCTGTTGTTGTCTCTGGTACTGTCTTGAGCCAAGAACAACATCTTCCGAGCTCCGACGACCGAGCCGATGCAGACAAAAACCGATAGCGAAAGCACCAAAATGCTGGACTGAGCTAGCCTCATTGCGCCAATTAGTTAAGAACTTTATGATTTAGAAACCATGAGAAAGGTGAGGATGAGAATATATATATACTTGAAAAAACAACAGAATGAAGAATTTACACTTGAAAAGTGACCTGTGAAGGAGGGAGAGAGGAAGAGAAAAGGCAAAAGGAATTGGCAAAGTGAGAGAGAAAGAGAGAGAGAGAGAAGGGAAGAAGATAAGGAGTTAGTAATAGAGTGTGAAGAACATTAAGTAATGGTACCAATTGGAAGAAACATAAACAGTAAAAGACTCTTTTTTATGCATCAAAATCGCTCTCTGATCCAAAAAAAACCTCTTCACCAACCCTCATTAATGGCCATTGGATGAAATATCATAAATAAATTTAAACAAGACAAGGATTTGTAATTGGGAACTGTAACAAAAGCCCAAAACACAACATTCTGTTCTCATATATATATATATAGACCACAACCAAAACAAACAAAAAAAATATCAATTCCTCTCAATAACCAGTGAGTTATGGAGGAAGCTTTGTATGTTCAGGACCTCCTCGTGCTTCCAAAGGGCCATGTGCCATTAAAAGCTGACATTCAGAGAAAAGGGTAGAGAAATAGCAGAGGGAAAGCTTGGGGGAGACGTTCATGGAGTTAATGAACAAAAACTTTAATCTTTTTTATGTTTGCTTGGCTTTGCATTCATAGTGTGAGTTGTTTGTTAGTGTTGCCGTCCGTTTGGCCTGGCCTGAATGATGAAAATCTCAGAACTTTTTTATGGCATTGAATTAAAGAGGGTTGTTTTTCTGTTGGTAAGGGCTTTTGAATGCTTATAAAACTTGAAATTGTGTGTCATAAGATATCGTAAGAGAAGTCCCCAACATTATGCCGTGGTCGGTCCAATCACTGATGGAAACGTATTGAGGCTCCAACTCAGGCACTTTTAGATGCATGTCAACTAAGAACAGGCTTGACTTGAATGTAGAGACACCTCCACCACCACACAATTTGCTACCCACCAAGTATAAACCATCATAAGTGGCTGAGTAACGCCTAACAATCCCTCTCCTACGAAAGCCAAACACCACTCCTTCCAACTTTTTAAAAGGTGACACCACCTTAGACTAAGTACTCACCCGAGAACTCGTATGTAATGGTTCAAGGCTACTACTAATCGATATTATCTTTTTTGGACCTTTACTTTCGAGCTTCCCCTCAAAGATTTAAAAATCCGTTTGCTAGAGAAAGGTTTCCACACTCTTATAAAGAATGTTTCGTTCCCTCCTCCAACTGATATGGAATCTCACAATCTACCCCCTTTAGAGGCCTAGCATCCTCACTGACACTCGTTCTCCAATCCAATCGATGTGGGATCTCACACCTTCTACTACGAAAAAAAAGTTGTGATAAGAAACACTCGTACTACGGTTAAGCAATCCTCTTCGAATAATTCATCCAATCCAAAGATAGCTATAATATCTTGCTGTTCTTATCATGTTCATAGGAATGAAGTAAATAAATCATCTTTTTGTTTAGATGCTCTAAGTTTTAACGAACGGAATGTGTAACATGTCGTTGTACTAACTTAAGCTTAAGTATTTGGTGGCAATATTGACAATTTTGTGACCATTAAAAAGGGTGGAAGAAAAAGGAAAGAAGAGTTAAAGAGATTAGAGAGGTTGAAAAAGCTCTTAGTTAGTATGCCTCCTCAATTAATTTATCCCAAAACTAGTAACACTTTAATGACTTTGCACAGAAAGGCAATTATTAATTAATAAAACTTAGCTGAGCTGCAAGAATGATTAATTTCCTATAAGCCCTCAAGTTGAGAGGGTTAGGGTTTGAGTTAGAGAAATAAATGAGGTAGGGCTGCTCTAATCTTCATAACCATTTTTTTTTTTAATGTTGCTTTACTCAGCCTTGAGAGACAAATTGATCTATAAGGCTATGGGTAGAATATTAAAAAAAATGTTTAAATTAAATTAAATTATATCATTTTATTTAATATTGTTCGTGTGTCGTTAATTAGTAAATCCCATGAAAACTTGTTACTAGCGATGAAAGCTTTACATGTAAGTTGTTTATATCTTTTTCATTCATCTTTTAGATATTCGTTGGCTGTCAGTCGAGGTAGATAGCTTTCGAGAGTTGTATAGTTATAACAGGGGTCGTCTCAGGGCATTAGCCCATCGATAAATTTTGAGGTTTTTTTTGTATTTTGTTTTGAATTTTGTATCCCGAGAACTTTTCCACTTGAACAGCACCAAAAGTAAGCCTAATTTTTTAATTTTTTTATATAAAGAAATAGAAGAAAATTACTTTTGGTTGAATCAAATTTTGGGCATGAAAAAAGAAAGATTTTTTTTTTTTTTTTTTTAACAATATTTCAAAATAAGTTTGAAGGTAATAAATGAAGAAAAGTCAATTTAATTTTTTGTGTGGAGGCAATCATTTAAAATGAAAGAAAAAAGTGTCCCTAAAACCCAAAAAGTCTTTTATTATTATTATTTTTTAATTATCTCTATACAAATAGAGTAAGCTAAATAATTCCCACAACTTTATATTTAATCCTATGATTCAATCTACAACAAATTCTAATTCACTTTTTTTGAATTAAAATTAAAAAACGTCCTTTCGAGAACGTTGATCATTAGCCAACACTTGACCCTCCTTACTTTTAAGGTTGGTTTATTTCAAGGTTCATCAAGAGTCTCTCGGTCAACTCTCAAAACATTGGTTGAAGGCTCGATGAACCCTAGGGGACTTGATCAAGCAAACTAAGATGACCCA

mRNA sequence

ATGCTAGTTAGATCTTGTTGTGATATCCATCCAGACACTGATGGAGTTTGCTGTCAACAACAGCTAATTGAAAACAACAAGAAATGTGTTCACGGAGTCAAAATATATCTTCAATTTAAAATTCCAAAGGCTTTGACCAATCGTTTTGATGTTTGGAAAAAGAAAGTCAACATGAATGTCAAATCCAAGATTGTTAAAGAGGAATTGAACCGATCTTGAGAGTTGAAAATTGGGCTTTTTGAATCAGCGCCCGCGTAGGAGAAGCTCAAACCCATCACAGGACGAGAGAAAAATCAAGGTTCATCAAGAGTCTCTCGGTCAACTCTCAAAACATTGGTTGAAGGCTCGATGAACCCTAGGGGACTTGATCAAGCAAACTAAGATGACCCA

Coding sequence (CDS)

ATGCTAGTTAGATCTTGTTGTGATATCCATCCAGACACTGATGGAGTTTGCTGTCAACAACAGCTAATTGAAAACAACAAGAAATGTGTTCACGGAGTCAAAATATATCTTCAATTTAAAATTCCAAAGGCTTTGACCAATCGTTTTGATGTTTGGAAAAAGAAAGTCAACATGAATGTCAAATCCAAGATTGTTAAAGAGGAATTGAACCGATCTTGA

Protein sequence

MLVRSCCDIHPDTDGVCCQQQLIENNKKCVHGVKIYLQFKIPKALTNRFDVWKKKVNMNVKSKIVKEELNRS
Homology
[Close]
BLAST of CmoCh11G003460 vs. NCBI nr
Match: KAG6587714.1 (hypothetical protein SDJN03_16279, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.3 bits (321), Expect = 2.8e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 12 DTDGVCCQQQLIENNKKCVHGVKIYLQFKIPKALTNRFDVWKKKVNMNVKSKIVKEELNR 71
          DTDGVCCQQQLIENNKKCVHGVKIYLQFKIPKALTNRFDVWKKKVNMNVKSKIVKEELNR
Sbjct: 35 DTDGVCCQQQLIENNKKCVHGVKIYLQFKIPKALTNRFDVWKKKVNMNVKSKIVKEELNR 94

Query: 72 S 73
          S
Sbjct: 95 S 95

The following BLAST results are available for this feature:
BLAST of CmoCh11G003460 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G003460 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G003460 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6587714.12.8e-26100.00hypothetical protein SDJN03_16279, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh11G003460 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G003460.1CmoCh11G003460.1mRNA