CmoCh11G002730 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G002730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	LOB domain-containing protein
Location	Cmo_Chr11: 1337398 .. 1339846 (-)
RNA-Seq Expression	CmoCh11G002730
Synteny	CmoCh11G002730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTTCTTGCTGAGTCCCGTTGTCGTCATCATCATCGTCGTTCATCAAAATCTCAAAGAGATGAGATATGTGTGTAATTAAAGTGACTAATGAATGTTTTGGAGGAACTAATCCAGGAAATAAAGAAGAGAAATGCAGAGTAGTTATTAATCCCTTTCCATTGTTCTTTGTTTCACTTAGTGACCATTATTAATAATGTTCTGAGAGGTCAGTTTCAGAGTGCTTATTAAAAAGGTGGAGATGGGAAGTGGCCAATAGTGAGAGAGATCCTTCAATATATATATATATATATGTATGTATGTATATATATATGTATGTATGCCATCCATTGAATGCCATTTTTTTATATCTGTTTATAGTTTTGGGCTGCATAAAAAAAAGTCCATAAGCTTTGGGTTGAAAGCAGCCCATTAATATACACTGTTTTTATTTAATAATATCAATTTTGACTTTATATTTCTTTTGAATAAAATAAAAATGGGGGGCGCCCACTGGATTTGCCTTCCAATGGACCCCACTCTCTTCACCTTCCCATTTTTTATTTTTATTTAAATACTTTTTTTAAATAAAAAACATTATAACTCATTCAACCCACGAAATTTTATGATTCCTTCCTTTAAATTCATACAGTTTTGGCAAGAAAACTTTGACTTTTCTTCTTAATGGAAACCCAATTTTAAAATTTTAAAATATAATAGACTAATTTCAAACTTTTTAAGCAATATGGACTAAATTTAATCAAATAATCTAAAATTAGGAATTAAAACATATTTTTAACCTTTTTTAAATAATAAATATTACGTCATTAGGTGGTCAGGTTAATTTGTATTTTACTTCTCAATTTTCCATTTCCATTCCACTCCGTATCCTCTCAACCATTTAAAGTTATAATATAATTAAGCTCTAAACTAAAATATTAAAATCTAGTTTCATAACTATTTTGTTTTAAATTTTATTAATTAAATACCATTTTAGTATTTTATTTATATATTTTTTTTTAATTTAAACTATGTTTTGAAAACTTTAAAAAAAAAAATGGCTCCAATTTTTTTTTAAATTCAATAAGAATTATTATTATTATTTGTACAAAAAATGAGAAGGATGATCATAGTTTTGAAAAGCAAAAGAAATAAAAAAATTAAGGTCTCATTTCATAACTATTTTATTTTTTTAATTGAAATCTATTTAGAATTTAAATATTTTTACTTAAAAAAATAAAATTAGTAGAGATAAAATTTAAAATCAAGTAATTATTAAACTTTATCTGAATAGTTATAATTAATGATTAGAGGAAGAAAATAAAAAGAAAAAGGAGGGTGGAAATATTAAATTTTTTTATTTATGGAAAAGAAAATTTAATAATCCCACTAAGAATTGAGTAATAAAAAGGAGGAGGGAATAAACAAATAATTAATTAACTAATTAATTAATGGTATCGGATGGAAGTGGTCAAAGAAAGTTTCCCAATGGTTAGCAAAAAACCAGAGAATCGTCGAAACTGGAAAACTACCATTTTCTTGGAAAACCACTTGCGGAAATCATTACAAAAACAAAACCCCCCCTTGTTTCTTTCTCCATCTACATTTCTTCCATTTTACGCACAGATTCTTCTTCGTTATTCATCCATCCATCGAGCCATGCGTATTAGCTGTAATGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAAAGCTGCTCCATCAGGCCTTGTCTTCAATGGATCAAAACCCCCCAATCCCAAGCCAACGCCACCTTCTTCCTTGCCAAATTCTACGGCCGAGCTGGCCTCGTTAATCTCATCAATGCCGGCCCCGATCATCTCCGCCCTGGTATTTCATCATATTCTACTCTGTTTCAATTACTCTGTTTTCATTGCTCTGTTTCAGTTACCTAAGGCTGTTTTTTGTTTTTTGGGTGTTTCAGCGATTTTTAAATCTTTGCTATTCGAGGCGTGTGGGCGGATTGTGAACCCGATTTATGGGTCGGCCGGACTGTTGTGGTCCGGGAGCTGGCAGCTGTGTCAGGACGCCGTCGAAGCCGTTCTCAAAGGTGCACCGATTCTGTCTGTTTCTTCTGAGACTGCGGTGTCGCACATGGGCCCACCGTTGAAGGGCTGCGACATCCGCCACGTTTCGAAACAGCAAGGCGCCGCCCCCGATTCCGCGCTCCGGAAGATCAAAACACGACGGCGGTTCAAGCGATCGGCGCCCAACAAGCCGATGCCGAAGGAGGAGCCGGTGGTGGTAAATGAGTTCGTATTCGACGATCCGACTCGAGTTGTATCGGAGCCCCGGTGTTTGAAGTTCGAGCTGGATAGTTGGGTGGGCCATAAATCGCAGGAGAAGGACTGCAGCAGCAGCAGCGACGAGGCCGAGTGTTTGTCGGTGGAGGGTTCTGCAGTTGGGCAGGGTGGTGACGTGGAGTTAGAACTTAGCTTGGGGTTATAG

mRNA sequence

ATGGTTGTTCTTGCTGAGTCCCGTTGTCGTCATCATCATCGTCGTTCATCAAAATCTCAAAGAGATGAGATATGTGTATTCTTCTTCGTTATTCATCCATCCATCGAGCCATGCGTATTAGCTGTAATGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAAAGCTGCTCCATCAGGCCTTGTCTTCAATGGATCAAAACCCCCCAATCCCAAGCCAACGCCACCTTCTTCCTTGCCAAATTCTACGGCCGAGCTGGCCTCGTTAATCTCATCAATGCCGGCCCCGATCATCTCCGCCCTGGTATTTCATCATATTCTACTCTGTTTCAATTACTCTGTTTTCATTGCTCTGTTTCAGTTACCTAAGGCTGTTTTTTGTTTTTTGGGTGTTTCAGCGATTTTTAAATCTTTGCTATTCGAGGCGTGTGGGCGGATTGTGAACCCGATTTATGGGTCGGCCGGACTGTTGTGGTCCGGGAGCTGGCAGCTGTGTCAGGACGCCGTCGAAGCCGTTCTCAAAGGTGCACCGATTCTGTCTGTTTCTTCTGAGACTGCGGTGTCGCACATGGGCCCACCGTTGAAGGGCTGCGACATCCGCCACGTTTCGAAACAGCAAGGCGCCGCCCCCGATTCCGCGCTCCGGAAGATCAAAACACGACGGCGGTTCAAGCGATCGGCGCCCAACAAGCCGATGCCGAAGGAGGAGCCGGTGGTGGTAAATGAGTTCGTATTCGACGATCCGACTCGAGTTGTATCGGAGCCCCGGTGTTTGAAGTTCGAGCTGGATAGTTGGGTGGGCCATAAATCGCAGGAGAAGGACTGCAGCAGCAGCAGCGACGAGGCCGAGTGTTTGTCGGTGGAGGGTTCTGCAGTTGGGCAGGGTGGTGACGTGGAGTTAGAACTTAGCTTGGGGTTATAG

Coding sequence (CDS)

ATGGTTGTTCTTGCTGAGTCCCGTTGTCGTCATCATCATCGTCGTTCATCAAAATCTCAAAGAGATGAGATATGTGTATTCTTCTTCGTTATTCATCCATCCATCGAGCCATGCGTATTAGCTGTAATGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAAAGCTGCTCCATCAGGCCTTGTCTTCAATGGATCAAAACCCCCCAATCCCAAGCCAACGCCACCTTCTTCCTTGCCAAATTCTACGGCCGAGCTGGCCTCGTTAATCTCATCAATGCCGGCCCCGATCATCTCCGCCCTGGTATTTCATCATATTCTACTCTGTTTCAATTACTCTGTTTTCATTGCTCTGTTTCAGTTACCTAAGGCTGTTTTTTGTTTTTTGGGTGTTTCAGCGATTTTTAAATCTTTGCTATTCGAGGCGTGTGGGCGGATTGTGAACCCGATTTATGGGTCGGCCGGACTGTTGTGGTCCGGGAGCTGGCAGCTGTGTCAGGACGCCGTCGAAGCCGTTCTCAAAGGTGCACCGATTCTGTCTGTTTCTTCTGAGACTGCGGTGTCGCACATGGGCCCACCGTTGAAGGGCTGCGACATCCGCCACGTTTCGAAACAGCAAGGCGCCGCCCCCGATTCCGCGCTCCGGAAGATCAAAACACGACGGCGGTTCAAGCGATCGGCGCCCAACAAGCCGATGCCGAAGGAGGAGCCGGTGGTGGTAAATGAGTTCGTATTCGACGATCCGACTCGAGTTGTATCGGAGCCCCGGTGTTTGAAGTTCGAGCTGGATAGTTGGGTGGGCCATAAATCGCAGGAGAAGGACTGCAGCAGCAGCAGCGACGAGGCCGAGTGTTTGTCGGTGGAGGGTTCTGCAGTTGGGCAGGGTGGTGACGTGGAGTTAGAACTTAGCTTGGGGTTATAG

Protein sequence

MVVLAESRCRHHHRRSSKSQRDEICVFFFVIHPSIEPCVLAVMDAEFFAKAAVKAAPSGLVFNGSKPPNPKPTPPSSLPNSTAELASLISSMPAPIISALVFHHILLCFNYSVFIALFQLPKAVFCFLGVSAIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGPPLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPTRVVSEPRCLKFELDSWVGHKSQEKDCSSSSDEAECLSVEGSAVGQGGDVELELSLGL

Homology

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BLAST of CmoCh11G002730 vs. ExPASy Swiss-Prot
Match: Q9M886 (LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.4e-26
Identity = 73/177 (41.24%), Postives = 101/177 (57.06%), Query Frame = 0


Query: 133 IFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGPP 192
           IF+SLL EACGRIVNPIYGS GLLWSG+WQLCQDAVEAV+KG P+  ++++ A    GPP
Sbjct: 65  IFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIGQGPP 124

Query: 193 LKGCDIRHVSKQQGAAP----DSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPT 252
           LK  DIRH+SK   +A      + L+  KTRR            K    V  +   +  +
Sbjct: 125 LKIYDIRHISKDDNSAAAATGSTDLKLAKTRR-----------AKRVSTVAIQAESEGKS 184

Query: 253 RVVSEPRCLKFELDSWVGHKSQEKDCSSSSDEAECLSVEGSAVGQGGDVELELSLGL 306
              S    L  + +    H+ + K+  S S+ +E L+    AV   G+++L+L+L L
Sbjct: 185 DEASHDSSLSHQSEIVAAHEGESKE--SESNVSEVLAFSPPAVKGSGEIKLDLTLRL 228

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BLAST of CmoCh11G002730 vs. ExPASy Swiss-Prot
Match: Q9ZW96 (LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.6e-23
Identity = 70/188 (37.23%), Postives = 96/188 (51.06%), Query Frame = 0


Query: 110 NYSVFIALFQLPKAVFCFLGVS------AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQL 169
           N +VF+A F     +   L         AIF+SLL+EACGRIVNPIYGS GLLWSG+W L
Sbjct: 36  NATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHL 95

Query: 170 CQDAVEAVLKGAPILSVSSETAVSHMGPPL--KGCDIRHVSKQQGAAPDSALRKIKTRRR 229
           CQ AVEAV++G+P+  ++ + AV+   PP   K CDIRHVS +       +    K  R 
Sbjct: 96  CQAAVEAVMRGSPVTPIACDAAVTGQAPPFNNKLCDIRHVSSRDENVKRRSRGACKEERN 155

Query: 230 FKRSAPNKPMPKEEPVVVNEFVFDDPTRVVSEPRCLKFELDSWVGH------KSQEKDCS 284
            +  +    +  E PV   E   ++P   +     L  E  +   H      K + + C 
Sbjct: 156 VRSLSHESSLSHESPVSSEETTTEEPKTWIGLELTLGLEPLARGNHVVVPMKKRKLERCG 215

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BLAST of CmoCh11G002730 vs. ExPASy Swiss-Prot
Match: Q9CA30 (LOB domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=LBD42 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.7e-17
Identity = 53/109 (48.62%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 132 AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPI--LSVSSETAVSHM 191
           AIF+SLL+EACGRIVNP+ GS GL+WSG+W  CQ AV+AVL G PI    + S +A   +
Sbjct: 64  AIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASASHQI 123

Query: 192 GPPLKGCDIRHVSKQQGAAPDSA--------LRKIKTRR-RFKRSAPNK 230
            PP +  DIRHV+K      DS+          K KT+  RFKR + N+
Sbjct: 124 IPPHRTYDIRHVAKDPTTGGDSSENLATRVNANKSKTQTGRFKRESVNQ 172

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BLAST of CmoCh11G002730 vs. ExPASy Swiss-Prot
Match: Q9SZE8 (LOB domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=LBD39 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-10
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 132 AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVS 182
           A+F+SLLFEACGR VNP+ G+ G+LW+ +W +CQ AVE VL+G  +  +S
Sbjct: 62  ALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPIS 111

[Close]

BLAST of CmoCh11G002730 vs. ExPASy Swiss-Prot
Match: Q9SN23 (LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-10
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 112 SVFIALFQLPKAVFCFLGV------SAIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQ 171
           +VF+A F     +  F+         A+F+SLL+EACGR VNP+ G+ GLLW+G+W +CQ
Sbjct: 36  TVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQ 95

Query: 172 DAVEAVLKGAPI 178
            AVE VL+G  +
Sbjct: 96  AAVETVLRGGSL 107

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BLAST of CmoCh11G002730 vs. ExPASy TrEMBL
Match: A0A6J1F4A2 (LOB domain-containing protein 40-like OS=Cucurbita moschata OX=3662 GN=LOC111440342 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.7e-92
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 132 AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGP 191
           AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGP
Sbjct: 130 AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGP 189

Query: 192 PLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPTRVV 251
           PLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPTRVV
Sbjct: 190 PLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPTRVV 249

Query: 252 SEPRCLKFELDSWVGHKSQEKDCSSSSDEAECLSVEGSAVGQGGDVELELSLGL 306
           SEPRCLKFELDSWVGHKSQEKDCSSSSDEAECLSVEGSAVGQGGDVELELSLGL
Sbjct: 250 SEPRCLKFELDSWVGHKSQEKDCSSSSDEAECLSVEGSAVGQGGDVELELSLGL 303

[Close]

BLAST of CmoCh11G002730 vs. ExPASy TrEMBL
Match: A0A6J1L0Y6 (LOB domain-containing protein 41-like OS=Cucurbita maxima OX=3661 GN=LOC111498884 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 3.3e-82
Identity = 160/175 (91.43%), Postives = 165/175 (94.29%), Query Frame = 0


Query: 132 AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGP 191
           AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPIL VSSE+A SHMGP
Sbjct: 64  AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSESAASHMGP 123

Query: 192 PLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPTRVV 251
           PLKGCDIRHVS+QQG+APDSAL+KIKTRRR KRSAPNKPMPKEEPVVV EF FDDPTR+V
Sbjct: 124 PLKGCDIRHVSRQQGSAPDSALQKIKTRRRLKRSAPNKPMPKEEPVVVTEFAFDDPTRIV 183

Query: 252 SEPRCLKFELDSWVGHKSQEKDCSS-SSDEAECLSVEGSAVGQGGDVELELSLGL 306
           SEPRCL FELDSWVGHKSQEKD SS SSDEAECLSVEGSAV Q GDVELELSLGL
Sbjct: 184 SEPRCLMFELDSWVGHKSQEKDGSSGSSDEAECLSVEGSAVEQVGDVELELSLGL 238

[Close]

BLAST of CmoCh11G002730 vs. ExPASy TrEMBL
Match: A0A0A0LPS5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G023060 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-66
Identity = 138/175 (78.86%), Postives = 148/175 (84.57%), Query Frame = 0


Query: 132 AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGP 191
           AIFKSLLFEACGRIVNPI+GSAGLLWSGSWQLCQDAVEAVLKGAPIL VSSETA SHMGP
Sbjct: 64  AIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASHMGP 123

Query: 192 PLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPKEEP--VVVNEFVFDDPTR 251
           PLKGCDIRHVSKQQ +A  SA+RKIKTRRRFKRS   K  PKEEP  VVV EF FDD T+
Sbjct: 124 PLKGCDIRHVSKQQDSASGSAVRKIKTRRRFKRSGTAKLKPKEEPSVVVVPEFKFDDQTQ 183

Query: 252 VVSEPRCLKFELDSWVGHKSQEKDCSSSSDEAECLSVEGSAVGQGGDVELELSLG 305
           +VSEP+CLKFELD+W G +S EKDC   SD+ ECLSVE     QGGDVELEL+LG
Sbjct: 184 IVSEPQCLKFELDNWKGRESPEKDC--GSDDTECLSVETVEGCQGGDVELELTLG 236

[Close]

BLAST of CmoCh11G002730 vs. ExPASy TrEMBL
Match: A0A5A7UQD2 (LOB domain-containing protein 41-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00550 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.9e-66
Identity = 139/176 (78.98%), Postives = 149/176 (84.66%), Query Frame = 0


Query: 132 AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGP 191
           AIFKSLLFEACGRIVNPI+GSAGLLWSGSWQLCQDAVEAVLKGAPIL VSSETA SHMGP
Sbjct: 64  AIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASHMGP 123

Query: 192 PLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRS-APNKPMPKEEP--VVVNEFVFDDPT 251
           PLKGCDIRHVSKQQG+A  SA+RKIKTRRRFKRS   NK  PKEEP  V V EF+FDD T
Sbjct: 124 PLKGCDIRHVSKQQGSASASAVRKIKTRRRFKRSGTANKLKPKEEPGVVAVPEFIFDDQT 183

Query: 252 RVVSEPRCLKFELDSWVGHKSQEKDCSSSSDEAECLSVEGSAVGQGGDVELELSLG 305
           R+VSEPRCLKFELD+W G +  EK+C   SD+ ECLSVE     QGGDVELEL+LG
Sbjct: 184 RIVSEPRCLKFELDNWKGGEWPEKEC--GSDDTECLSVETVEGCQGGDVELELTLG 237

[Close]

BLAST of CmoCh11G002730 vs. ExPASy TrEMBL
Match: A0A1S3BXA9 (LOB domain-containing protein 41-like OS=Cucumis melo OX=3656 GN=LOC103494123 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.9e-66
Identity = 139/176 (78.98%), Postives = 149/176 (84.66%), Query Frame = 0


Query: 132 AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGP 191
           AIFKSLLFEACGRIVNPI+GSAGLLWSGSWQLCQDAVEAVLKGAPIL VSSETA SHMGP
Sbjct: 64  AIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASHMGP 123

Query: 192 PLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRS-APNKPMPKEEP--VVVNEFVFDDPT 251
           PLKGCDIRHVSKQQG+A  SA+RKIKTRRRFKRS   NK  PKEEP  V V EF+FDD T
Sbjct: 124 PLKGCDIRHVSKQQGSASASAVRKIKTRRRFKRSGTANKLKPKEEPGVVAVPEFIFDDQT 183

Query: 252 RVVSEPRCLKFELDSWVGHKSQEKDCSSSSDEAECLSVEGSAVGQGGDVELELSLG 305
           R+VSEPRCLKFELD+W G +  EK+C   SD+ ECLSVE     QGGDVELEL+LG
Sbjct: 184 RIVSEPRCLKFELDNWKGGEWPEKEC--GSDDTECLSVETVEGCQGGDVELELTLG 237

[Close]

BLAST of CmoCh11G002730 vs. NCBI nr
Match: KAG7021607.1 (LOB domain-containing protein 41, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 508.4 bits (1308), Expect = 4.1e-140
Identity = 263/264 (99.62%), Postives = 263/264 (99.62%), Query Frame = 0


Query: 43  MDAEFFAKAAVKAAPSGLVFNGSKPPNPKPTPPSSLPNSTAELASLISSMPAPIISALVF 102
           MDAEFFAKAAVKAAPSGLVFNGSKPPNPKPTPPSSLPNSTAELASLISSMPAPIISALVF
Sbjct: 1   MDAEFFAKAAVKAAPSGLVFNGSKPPNPKPTPPSSLPNSTAELASLISSMPAPIISALVF 60

Query: 103 HHILLCFNYSVFIALFQLPKAVFCFLGVSAIFKSLLFEACGRIVNPIYGSAGLLWSGSWQ 162
           HHILLCFNYSVFIALFQLPKAVFCFLGVSAIFKSLLFEACGRIVNPIYGSAGLLWSGSWQ
Sbjct: 61  HHILLCFNYSVFIALFQLPKAVFCFLGVSAIFKSLLFEACGRIVNPIYGSAGLLWSGSWQ 120

Query: 163 LCQDAVEAVLKGAPILSVSSETAVSHMGPPLKGCDIRHVSKQQGAAPDSALRKIKTRRRF 222
           LCQDAVEAVLKGAPILSVSSETAVSHMGPPLKGCDIRHVSKQQGAAPDSALRKIKTRRRF
Sbjct: 121 LCQDAVEAVLKGAPILSVSSETAVSHMGPPLKGCDIRHVSKQQGAAPDSALRKIKTRRRF 180

Query: 223 KRSAPNKPMPKEEPVVVNEFVFDDPTRVVSEPRCLKFELDSWVGHKSQEKDCSS-SSDEA 282
           KRSAPNKPMPKEEPVVVNEFVFDDPTRVVSEPRCLKFELDSWVGHKSQEKDCSS SSDEA
Sbjct: 181 KRSAPNKPMPKEEPVVVNEFVFDDPTRVVSEPRCLKFELDSWVGHKSQEKDCSSGSSDEA 240

Query: 283 ECLSVEGSAVGQGGDVELELSLGL 306
           ECLSVEGSAVGQGGDVELELSLGL
Sbjct: 241 ECLSVEGSAVGQGGDVELELSLGL 264

[Close]

BLAST of CmoCh11G002730 vs. NCBI nr
Match: XP_022933273.1 (LOB domain-containing protein 40-like [Cucurbita moschata])

HSP 1 Score: 348.6 bits (893), Expect = 5.5e-92
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 132 AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGP 191
           AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGP
Sbjct: 130 AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGP 189

Query: 192 PLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPTRVV 251
           PLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPTRVV
Sbjct: 190 PLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPTRVV 249

Query: 252 SEPRCLKFELDSWVGHKSQEKDCSSSSDEAECLSVEGSAVGQGGDVELELSLGL 306
           SEPRCLKFELDSWVGHKSQEKDCSSSSDEAECLSVEGSAVGQGGDVELELSLGL
Sbjct: 250 SEPRCLKFELDSWVGHKSQEKDCSSSSDEAECLSVEGSAVGQGGDVELELSLGL 303

[Close]

BLAST of CmoCh11G002730 vs. NCBI nr
Match: KAG6587647.1 (LOB domain-containing protein 41, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 341.3 bits (874), Expect = 8.8e-90
Identity = 173/175 (98.86%), Postives = 173/175 (98.86%), Query Frame = 0


Query: 132 AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGP 191
           AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGP
Sbjct: 64  AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGP 123

Query: 192 PLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPTRVV 251
           PLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPTRVV
Sbjct: 124 PLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPTRVV 183

Query: 252 SEPRCLKFELDSWVGHKSQEKDCSS-SSDEAECLSVEGSAVGQGGDVELELSLGL 306
           SEPRCLKFELDSWVGHKS EKDCSS SSDEAECLSVEGSAVGQGGDVELELSLGL
Sbjct: 184 SEPRCLKFELDSWVGHKSLEKDCSSGSSDEAECLSVEGSAVGQGGDVELELSLGL 238

[Close]

BLAST of CmoCh11G002730 vs. NCBI nr
Match: XP_023531745.1 (LOB domain-containing protein 40-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.4 bits (851), Expect = 4.1e-87
Identity = 167/174 (95.98%), Postives = 169/174 (97.13%), Query Frame = 0


Query: 132 AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGP 191
           A+FKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETA SHMGP
Sbjct: 130 AVFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAASHMGP 189

Query: 192 PLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPTRVV 251
           PLK CDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMP+EEPVVV EFVFDDPTRVV
Sbjct: 190 PLKDCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPEEEPVVVTEFVFDDPTRVV 249

Query: 252 SEPRCLKFELDSWVGHKSQEKDCSSSSDEAECLSVEGSAVGQGGDVELELSLGL 306
           SEPRCLKFELDSWVGHKSQEKDC  SSDEAECLSVEGSAVGQGGDVELELSLGL
Sbjct: 250 SEPRCLKFELDSWVGHKSQEKDC--SSDEAECLSVEGSAVGQGGDVELELSLGL 301

[Close]

BLAST of CmoCh11G002730 vs. NCBI nr
Match: XP_023006009.1 (LOB domain-containing protein 41-like [Cucurbita maxima])

HSP 1 Score: 315.1 bits (806), Expect = 6.7e-82
Identity = 160/175 (91.43%), Postives = 165/175 (94.29%), Query Frame = 0


Query: 132 AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGP 191
           AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPIL VSSE+A SHMGP
Sbjct: 64  AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSESAASHMGP 123

Query: 192 PLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPTRVV 251
           PLKGCDIRHVS+QQG+APDSAL+KIKTRRR KRSAPNKPMPKEEPVVV EF FDDPTR+V
Sbjct: 124 PLKGCDIRHVSRQQGSAPDSALQKIKTRRRLKRSAPNKPMPKEEPVVVTEFAFDDPTRIV 183

Query: 252 SEPRCLKFELDSWVGHKSQEKDCSS-SSDEAECLSVEGSAVGQGGDVELELSLGL 306
           SEPRCL FELDSWVGHKSQEKD SS SSDEAECLSVEGSAV Q GDVELELSLGL
Sbjct: 184 SEPRCLMFELDSWVGHKSQEKDGSSGSSDEAECLSVEGSAVEQVGDVELELSLGL 238

[Close]

BLAST of CmoCh11G002730 vs. TAIR 10
Match: AT3G02550.1 (LOB domain-containing protein 41 )

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-27
Identity = 73/177 (41.24%), Postives = 101/177 (57.06%), Query Frame = 0


Query: 133 IFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGPP 192
           IF+SLL EACGRIVNPIYGS GLLWSG+WQLCQDAVEAV+KG P+  ++++ A    GPP
Sbjct: 65  IFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIGQGPP 124

Query: 193 LKGCDIRHVSKQQGAAP----DSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPT 252
           LK  DIRH+SK   +A      + L+  KTRR            K    V  +   +  +
Sbjct: 125 LKIYDIRHISKDDNSAAAATGSTDLKLAKTRR-----------AKRVSTVAIQAESEGKS 184

Query: 253 RVVSEPRCLKFELDSWVGHKSQEKDCSSSSDEAECLSVEGSAVGQGGDVELELSLGL 306
              S    L  + +    H+ + K+  S S+ +E L+    AV   G+++L+L+L L
Sbjct: 185 DEASHDSSLSHQSEIVAAHEGESKE--SESNVSEVLAFSPPAVKGSGEIKLDLTLRL 228

[Close]

BLAST of CmoCh11G002730 vs. TAIR 10
Match: AT1G67100.1 (LOB domain-containing protein 40 )

HSP 1 Score: 109.8 bits (273), Expect = 4.0e-24
Identity = 70/188 (37.23%), Postives = 96/188 (51.06%), Query Frame = 0


Query: 110 NYSVFIALFQLPKAVFCFLGVS------AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQL 169
           N +VF+A F     +   L         AIF+SLL+EACGRIVNPIYGS GLLWSG+W L
Sbjct: 36  NATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHL 95

Query: 170 CQDAVEAVLKGAPILSVSSETAVSHMGPPL--KGCDIRHVSKQQGAAPDSALRKIKTRRR 229
           CQ AVEAV++G+P+  ++ + AV+   PP   K CDIRHVS +       +    K  R 
Sbjct: 96  CQAAVEAVMRGSPVTPIACDAAVTGQAPPFNNKLCDIRHVSSRDENVKRRSRGACKEERN 155

Query: 230 FKRSAPNKPMPKEEPVVVNEFVFDDPTRVVSEPRCLKFELDSWVGH------KSQEKDCS 284
            +  +    +  E PV   E   ++P   +     L  E  +   H      K + + C 
Sbjct: 156 VRSLSHESSLSHESPVSSEETTTEEPKTWIGLELTLGLEPLARGNHVVVPMKKRKLERCG 215

[Close]

BLAST of CmoCh11G002730 vs. TAIR 10
Match: AT1G68510.1 (LOB domain-containing protein 42 )

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-18
Identity = 53/109 (48.62%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 132 AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPI--LSVSSETAVSHM 191
           AIF+SLL+EACGRIVNP+ GS GL+WSG+W  CQ AV+AVL G PI    + S +A   +
Sbjct: 64  AIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASASHQI 123

Query: 192 GPPLKGCDIRHVSKQQGAAPDSA--------LRKIKTRR-RFKRSAPNK 230
            PP +  DIRHV+K      DS+          K KT+  RFKR + N+
Sbjct: 124 IPPHRTYDIRHVAKDPTTGGDSSENLATRVNANKSKTQTGRFKRESVNQ 172

[Close]

BLAST of CmoCh11G002730 vs. TAIR 10
Match: AT4G37540.1 (LOB domain-containing protein 39 )

HSP 1 Score: 68.9 bits (167), Expect = 7.8e-12
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 132 AIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVS 182
           A+F+SLLFEACGR VNP+ G+ G+LW+ +W +CQ AVE VL+G  +  +S
Sbjct: 62  ALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPIS 111

[Close]

BLAST of CmoCh11G002730 vs. TAIR 10
Match: AT3G49940.1 (LOB domain-containing protein 38 )

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-11
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 112 SVFIALFQLPKAVFCFLGV------SAIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQ 171
           +VF+A F     +  F+         A+F+SLL+EACGR VNP+ G+ GLLW+G+W +CQ
Sbjct: 36  TVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQ 95

Query: 172 DAVEAVLKGAPI 178
            AVE VL+G  +
Sbjct: 96  AAVETVLRGGSL 107

The following BLAST results are available for this feature:

BLAST of CmoCh11G002730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M886	1.4e-26	41.24	LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 S...	[more]
Q9ZW96	5.6e-23	37.23	LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 S...	[more]
Q9CA30	2.7e-17	48.62	LOB domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=LBD42 PE=1 S...	[more]
Q9SZE8	1.1e-10	56.00	LOB domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=LBD39 PE=2 S...	[more]
Q9SN23	1.4e-10	45.83	LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 S...	[more]

BLAST of CmoCh11G002730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4A2	2.7e-92	100.00	LOB domain-containing protein 40-like OS=Cucurbita moschata OX=3662 GN=LOC111440...	[more]
A0A6J1L0Y6	3.3e-82	91.43	LOB domain-containing protein 41-like OS=Cucurbita maxima OX=3661 GN=LOC11149888...	[more]
A0A0A0LPS5	1.1e-66	78.86	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G023060 PE=3 SV...	[more]
A0A5A7UQD2	1.9e-66	78.98	LOB domain-containing protein 41-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BXA9	1.9e-66	78.98	LOB domain-containing protein 41-like OS=Cucumis melo OX=3656 GN=LOC103494123 PE...	[more]

BLAST of CmoCh11G002730 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021607.1	4.1e-140	99.62	LOB domain-containing protein 41, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022933273.1	5.5e-92	100.00	LOB domain-containing protein 40-like [Cucurbita moschata]	[more]
KAG6587647.1	8.8e-90	98.86	LOB domain-containing protein 41, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023531745.1	4.1e-87	95.98	LOB domain-containing protein 40-like [Cucurbita pepo subsp. pepo]	[more]
XP_023006009.1	6.7e-82	91.43	LOB domain-containing protein 41-like [Cucurbita maxima]	[more]

BLAST of CmoCh11G002730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02550.1	1.0e-27	41.24	LOB domain-containing protein 41	[more]
AT1G67100.1	4.0e-24	37.23	LOB domain-containing protein 40	[more]
AT1G68510.1	1.9e-18	48.62	LOB domain-containing protein 42	[more]
AT4G37540.1	7.8e-12	56.00	LOB domain-containing protein 39	[more]
AT3G49940.1	1.0e-11	45.83	LOB domain-containing protein 38	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 132..170 e-value: 1.6E-5 score: 25.4
None	No IPR available	PANTHER	PTHR31304:SF9	LOB DOMAIN-CONTAINING PROTEIN 40	coord: 132..276
None	No IPR available	PANTHER	PTHR31304	LOB DOMAIN-CONTAINING PROTEIN 38	coord: 132..276

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G002730.1	CmoCh11G002730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression