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CmoCh11G002050 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATCAACAAGTTATTGAAAATTGTTTTTCTCGCCAAGTCGAATTGCTTTATCAATGATTCGGTGAATGGATCTATATTCAATTCGTAGGTGTACATGTCTCAATCAACCTTTGAGACTATCCTATCCTTGTACAGTGCAAGAAGAAAAGGAAAGAAAGCTGCTTAGAGTTCGAGTTTACCTTTATCAAAGAAAAGAAGGAAGGAATCAACCTCTCCTGGACTGACCCTCCGTCGGGCCCAGCCCTTGGTTGCTCATCCTCGGCCCAGCATTAGTTTTTCCCGCCGGCGTCTTCCAACGATCCGTTCAAGGTTGCCGGCCATACATTTTTAGTTTCACTATAAGAATAAACCCCCATATCCACCTAGCAGATATTGTCCCTTCCCCTCTAGCCTATAGCCTAGGGAGTTTCTACACCCTTATAAATAAATGATGTTTTGTTCTGTTCTCCAATCAACGTGGAACATCACAATCCACTCCTTCGAGATTCAGCGTCCCAGCGTACACTTGTTCCTTTCTTCAATCAAAGTGGGACCACACAAAATCCATCTCTTTTGGGGCTAGCGTCTTTACTGGCACACCGCCTCGTGTCTACCCCCTTCGAAGAAGAGAAGGCTGGCACATCGTCGCTCTTAAACCATTTGTAACGCTTCAGATTCACATATTGTCCGATTTTTCTTTCGAATTTTTTCTGAAGACTTTAAAACGCTTCTGTTAGTTAAATATGGGATAACAGAATGCTGAGTTTCGGGAAGTTATTTGTGGGTCACGCGCGTACTGGTTAACAAGGAGCAGAAAGAGCAGTGGCTAGAAAACCCAAAAGTGGGCCACTCTAATTGATGCCATTTACCCTCTGAAAACCCACTCCCTTTATTTTGTATAGAACATACCCTCCACTTCAGGGTTTTTTACATTCTCTCCCTTTCTCTCCATAGCTCTCTCTTTCTGTGTGTGTGTGTGTGTGGTAGTGACAACTTTCTTCTGCCCACCATCTCTGAGCTTTGTAATCATGTCTTGTGGGATGCCTGTTTTAGCTATTGGGCTGCTTATTCTCGCCATGACTGGCCATTCACGTAAGCTCCCTGCATTTTTTATGCATTCTTTACTTCTGTTTTGTAGATCAAACGCATATTCTGGTATCTCTTTTTTAGTTTGACTTCTCATGAGCATTTCTCTTGTGAACCATGCTTTTCTCAATGTGCATTTAACCCTCTTTACTGAAATGTAACAATAATTCACCATTTGTTGTTCCTTTTGGGTGGCTAAGTGGTTCAAGAGGTCTGTGAGTTTCCAGTACCTTTGAAGTTTCTTTAGATGTCCAGATCTCGTTGTGTTTCGTTGGTTTTCTTCTGGCTGTCCCTTAAAATGCTGGTTTTATTGAACTTGTAGGTGCAACATGGTGTGTTTGCAAGAGCGGATTGGGCGATGCAGCTCTTCAGAAGACACTGGACTATGCTTGTGGAGCTGGGGCTGACTGTGTCCCTATTCATCAAAATGGTGGCTGTTTCCTTCCCAACACTGTCGAGGCCCATTGTTCCTATGCTGCTAATAGCTATTTCCAAAGGAAGGGCCAAGCTCCAGGTTCCTGTGATTTTTCTGGCACAGCAATGGTCACTACTACTAACCCCAGTAAGACTTCGCTCTCTACATTCTCATGTTTTTCTCTAATTTTTTTCTAAGTAAGAACTGATTAACTTGGTGAGAAGAAAAATGGAAACAAACCCACATCGGAATTAACTCAGATACTCATTTCAAAGGCCCTTAGCCGTCTATTTCAGCTACTAAATGAAATTATGACTTCATGCTTATGAATATCTCTTTCTTTCTTGGTATCTTTTCAGGCATTTCAGGCTGCGTTTATCCTTCTAGCGCTAGGTATGCTTCTGCTTTATTTTATGATTTAGTTTTCATTTGAACAAACAGAGAAGCTTTTTACTTGAAAAGAAGTAGAGCATCTTGTTAATTAAAGATTCAAAAACTAAATTCAAAGTTAGCTTTTGATAATCATAGATACTGTTGGAAAAGATGCTTTTGGCCATTAGATTAGCCATCATCATCCCATTGTGTTGTAATCATAGATGCTCTTCTTGTCAATTGACTATAATGTAGTTTCACGACCATTTTTTCTGGCTTCTTTCCTTAGATTGATATGAACTTGTTGTTGCTAATACTTTCTTCTCGATTCCTTCTTCCATAACTCGAGAATAGAGAAAGAAGAGATAAAAGGGCTCTATGGAGAATATGGTCATAAATCCATAATAGATTCCGTGGTTGCCTTTAACCGAACTTACTGATACATTTATTTTTCAAAAGATAGTGGGAGGTTGAAAATGGAGTTTTCATAATGTTGGTCTGATTTATGTTACATCCTCGAGATGGGATATCATTGAGATTTGAGCTTAGGCCGACCATGATTTTTGGAGAGAGGGGTTCACATGTGGAGGGAGGAAGGTTTGTTGGGGAAGAACTGTGTTCTATCTCATCTCATCTGAAGTGGGTTTGATTTGATTTTTGGTGATGTATTGTTGCAGCCCTGTAAATAGTGGGACTATTCCAGTATCTGGGACTCCAACCACCACCAACCCGGGCACTGGATTTACTCCAACCACCACAACCAACACTCCATTTGGTTCTACAACACCTACCGGCGGTGTCATGGGCGGGAATGGCTTCGGCACTGGTAGCAACGGTCTAGGACCACCGGGCGTCGGCGGGATGAACACCGACTACAGTGACAGCGGATCAAGGCTCCAACTTACTCTCATTGCTAATGTACTTGCTTTCTTGTTCGCTCTCATGTTCTTTAACCATATGGTTTGA ATCAACAAGTTATTGAAAATTGTTTTTCTCGCCAAGTCGAATTGCTTTATCAATGATTCGGTGAATGGATCTATATTCAATTCGTAGGTGTACATGTCTCAATCAACCTTTGAGACTATCCTATCCTTGTACAGTGCAAGAAGAAAAGGAAAGAAAGCTGCTTAGAGTTCGAGTTTACCTTTATCAAAGAAAAGAAGGAAGGAATCAACCTCTCCTGGACTGACCCTCCGTCGGGCCCAGCCCTTGGTTGCTCATCCTCGGCCCAGCATTAGTTTTTCCCGCCGGCGTCTTCCAACGATCCGTTCAAGGTTGCCGGCCATACATTTTTAGTTTCACTATAAGAATAAACCCCCATATCCACCTAGCAGATATTGTCCCTTCCCCTCTAGCCTATAGCCTAGGGAGTTTCTACACCCTTATAAATAAATGATGTTTTGTTCTGTTCTCCAATCAACGTGGAACATCACAATCCACTCCTTCGAGATTCAGCGTCCCAGCGTACACTTGTTCCTTTCTTCAATCAAAGTGGGACCACACAAAATCCATCTCTTTTGGGGCTAGCGTCTTTACTGGCACACCGCCTCGTGTCTACCCCCTTCGAAGAAGAGAAGGCTGGCACATCGTCGCTCTTAAACCATTTGTAACGCTTCAGATTCACATATTGTCCGATTTTTCTTTCGAATTTTTTCTGAAGACTTTAAAACGCTTCTGTTAGTTAAATATGGGATAACAGAATGCTGAGTTTCGGGAAGTTATTTGTGGGTCACGCGCGTACTGGTTAACAAGGAGCAGAAAGAGCAGTGGCTAGAAAACCCAAAAGTGGGCCACTCTAATTGATGCCATTTACCCTCTGAAAACCCACTCCCTTTATTTTGTATAGAACATACCCTCCACTTCAGGGTTTTTTACATTCTCTCCCTTTCTCTCCATAGCTCTCTCTTTCTGTGTGTGTGTGTGTGTGGTAGTGACAACTTTCTTCTGCCCACCATCTCTGAGCTTTGTAATCATGTCTTGTGGGATGCCTGTTTTAGCTATTGGGCTGCTTATTCTCGCCATGACTGGCCATTCACGTGCAACATGGTGTGTTTGCAAGAGCGGATTGGGCGATGCAGCTCTTCAGAAGACACTGGACTATGCTTGTGGAGCTGGGGCTGACTGTGTCCCTATTCATCAAAATGGTGGCTGTTTCCTTCCCAACACTGTCGAGGCCCATTGTTCCTATGCTGCTAATAGCTATTTCCAAAGGAAGGGCCAAGCTCCAGGTTCCTGTGATTTTTCTGGCACAGCAATGGTCACTACTACTAACCCCAGCATTTCAGGCTGCGTTTATCCTTCTAGCGCTAGGTATGCTTCTGCTTTATTTTATGATTTAATACTGTTGGAAAAGATGCTTTTGGCCATTAGATTAGCCATCATCATCCCATTGTGTTGTAATCATAGATGCTCTTCTTGTCAATTGACTATAATCCCTGTAAATAGTGGGACTATTCCAGTATCTGGGACTCCAACCACCACCAACCCGGGCACTGGATTTACTCCAACCACCACAACCAACACTCCATTTGGTTCTACAACACCTACCGGCGGTGTCATGGGCGGGAATGGCTTCGGCACTGGTAGCAACGGTCTAGGACCACCGGGCGTCGGCGGGATGAACACCGACTACAGTGACAGCGGATCAAGGCTCCAACTTACTCTCATTGCTAATGTACTTGCTTTCTTGTTCGCTCTCATGTTCTTTAACCATATGGTTTGA ATGTCTTGTGGGATGCCTGTTTTAGCTATTGGGCTGCTTATTCTCGCCATGACTGGCCATTCACGTGCAACATGGTGTGTTTGCAAGAGCGGATTGGGCGATGCAGCTCTTCAGAAGACACTGGACTATGCTTGTGGAGCTGGGGCTGACTGTGTCCCTATTCATCAAAATGGTGGCTGTTTCCTTCCCAACACTGTCGAGGCCCATTGTTCCTATGCTGCTAATAGCTATTTCCAAAGGAAGGGCCAAGCTCCAGGTTCCTGTGATTTTTCTGGCACAGCAATGGTCACTACTACTAACCCCAGCATTTCAGGCTGCGTTTATCCTTCTAGCGCTAGGTATGCTTCTGCTTTATTTTATGATTTAATACTGTTGGAAAAGATGCTTTTGGCCATTAGATTAGCCATCATCATCCCATTGTGTTGTAATCATAGATGCTCTTCTTGTCAATTGACTATAATCCCTGTAAATAGTGGGACTATTCCAGTATCTGGGACTCCAACCACCACCAACCCGGGCACTGGATTTACTCCAACCACCACAACCAACACTCCATTTGGTTCTACAACACCTACCGGCGGTGTCATGGGCGGGAATGGCTTCGGCACTGGTAGCAACGGTCTAGGACCACCGGGCGTCGGCGGGATGAACACCGACTACAGTGACAGCGGATCAAGGCTCCAACTTACTCTCATTGCTAATGTACTTGCTTTCTTGTTCGCTCTCATGTTCTTTAACCATATGGTTTGA MSCGMPVLAIGLLILAMTGHSRATWCVCKSGLGDAALQKTLDYACGAGADCVPIHQNGGCFLPNTVEAHCSYAANSYFQRKGQAPGSCDFSGTAMVTTTNPSISGCVYPSSARYASALFYDLILLEKMLLAIRLAIIIPLCCNHRCSSCQLTIIPVNSGTIPVSGTPTTTNPGTGFTPTTTTNTPFGSTTPTGGVMGGNGFGTGSNGLGPPGVGGMNTDYSDSGSRLQLTLIANVLAFLFALMFFNHMV Homology
BLAST of CmoCh11G002050 vs. ExPASy Swiss-Prot
Match: Q9FZ86 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana OX=3702 GN=PDCB3 PE=1 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 6.2e-36 Identity = 101/243 (41.56%), Postives = 126/243 (51.85%), Query Frame = 0
BLAST of CmoCh11G002050 vs. ExPASy Swiss-Prot
Match: Q9FNQ2 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=PDCB1 PE=1 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 3.1e-35 Identity = 96/226 (42.48%), Postives = 122/226 (53.98%), Query Frame = 0
BLAST of CmoCh11G002050 vs. ExPASy Swiss-Prot
Match: Q9SD84 (PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2 PE=1 SV=1) HSP 1 Score: 146.7 bits (369), Expect = 3.4e-34 Identity = 97/232 (41.81%), Postives = 123/232 (53.02%), Query Frame = 0
BLAST of CmoCh11G002050 vs. ExPASy Swiss-Prot
Match: Q94G86 (Glucan endo-1,3-beta-D-glucosidase OS=Olea europaea OX=4146 GN=OLE9 PE=1 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.6e-20 Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 0
BLAST of CmoCh11G002050 vs. ExPASy Swiss-Prot
Match: Q93V72 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4 OS=Arabidopsis thaliana OX=3702 GN=PDCB4 PE=1 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.6e-20 Identity = 91/249 (36.55%), Postives = 119/249 (47.79%), Query Frame = 0
BLAST of CmoCh11G002050 vs. ExPASy TrEMBL
Match: A0A6J1F5D0 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucurbita moschata OX=3662 GN=LOC111440995 PE=4 SV=1) HSP 1 Score: 391.0 bits (1003), Expect = 3.8e-105 Identity = 207/249 (83.13%), Postives = 207/249 (83.13%), Query Frame = 0
BLAST of CmoCh11G002050 vs. ExPASy TrEMBL
Match: A0A6J1KQ09 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucurbita maxima OX=3661 GN=LOC111497655 PE=4 SV=1) HSP 1 Score: 385.6 bits (989), Expect = 1.6e-103 Identity = 204/249 (81.93%), Postives = 204/249 (81.93%), Query Frame = 0
BLAST of CmoCh11G002050 vs. ExPASy TrEMBL
Match: A0A6J1E2D5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucurbita moschata OX=3662 GN=LOC111430147 PE=4 SV=1) HSP 1 Score: 315.8 bits (808), Expect = 1.6e-82 Identity = 170/248 (68.55%), Postives = 188/248 (75.81%), Query Frame = 0
BLAST of CmoCh11G002050 vs. ExPASy TrEMBL
Match: A0A6J1JDI8 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucurbita maxima OX=3661 GN=LOC111485814 PE=4 SV=1) HSP 1 Score: 310.8 bits (795), Expect = 5.0e-81 Identity = 169/248 (68.15%), Postives = 187/248 (75.40%), Query Frame = 0
BLAST of CmoCh11G002050 vs. ExPASy TrEMBL
Match: A0A5A7US74 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002920 PE=4 SV=1) HSP 1 Score: 306.2 bits (783), Expect = 1.2e-79 Identity = 171/250 (68.40%), Postives = 182/250 (72.80%), Query Frame = 0
BLAST of CmoCh11G002050 vs. NCBI nr
Match: XP_022933633.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucurbita moschata] >KAG7021544.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 391.0 bits (1003), Expect = 7.9e-105 Identity = 207/249 (83.13%), Postives = 207/249 (83.13%), Query Frame = 0
BLAST of CmoCh11G002050 vs. NCBI nr
Match: KAG6587578.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 391.0 bits (1003), Expect = 7.9e-105 Identity = 207/249 (83.13%), Postives = 207/249 (83.13%), Query Frame = 0
BLAST of CmoCh11G002050 vs. NCBI nr
Match: XP_023004287.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucurbita maxima]) HSP 1 Score: 385.6 bits (989), Expect = 3.3e-103 Identity = 204/249 (81.93%), Postives = 204/249 (81.93%), Query Frame = 0
BLAST of CmoCh11G002050 vs. NCBI nr
Match: XP_023530699.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 384.8 bits (987), Expect = 5.6e-103 Identity = 204/249 (81.93%), Postives = 205/249 (82.33%), Query Frame = 0
BLAST of CmoCh11G002050 vs. NCBI nr
Match: XP_038878558.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Benincasa hispida]) HSP 1 Score: 325.5 bits (833), Expect = 4.1e-85 Identity = 176/248 (70.97%), Postives = 191/248 (77.02%), Query Frame = 0
BLAST of CmoCh11G002050 vs. TAIR 10
Match: AT1G18650.1 (plasmodesmata callose-binding protein 3 ) HSP 1 Score: 152.5 bits (384), Expect = 4.4e-37 Identity = 101/243 (41.56%), Postives = 126/243 (51.85%), Query Frame = 0
BLAST of CmoCh11G002050 vs. TAIR 10
Match: AT5G61130.1 (plasmodesmata callose-binding protein 1 ) HSP 1 Score: 150.2 bits (378), Expect = 2.2e-36 Identity = 96/226 (42.48%), Postives = 122/226 (53.98%), Query Frame = 0
BLAST of CmoCh11G002050 vs. TAIR 10
Match: AT5G08000.1 (glucan endo-1,3-beta-glucosidase-like protein 3 ) HSP 1 Score: 146.7 bits (369), Expect = 2.4e-35 Identity = 97/232 (41.81%), Postives = 123/232 (53.02%), Query Frame = 0
BLAST of CmoCh11G002050 vs. TAIR 10
Match: AT4G13600.1 (Carbohydrate-binding X8 domain superfamily protein ) HSP 1 Score: 130.6 bits (327), Expect = 1.8e-30 Identity = 89/236 (37.71%), Postives = 115/236 (48.73%), Query Frame = 0
BLAST of CmoCh11G002050 vs. TAIR 10
Match: AT1G13830.1 (Carbohydrate-binding X8 domain superfamily protein ) HSP 1 Score: 119.0 bits (297), Expect = 5.4e-27 Identity = 79/203 (38.92%), Postives = 100/203 (49.26%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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