CmoCh11G001900 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G001900
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	HNH domain-containing protein
Location	Cmo_Chr11: 931562 .. 933832 (-)
RNA-Seq Expression	CmoCh11G001900
Synteny	CmoCh11G001900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGATCCGCCGGACGGCGTCGAAACTCCCATGGAAGCTACTTCCAGCTCGCCGTCACCGACTCGTTCCCGCGGCGGACCTAGACAGAGTGGCTCCGGAAATGGGAACGAACGGCCTAGATTTTTCGACACAAAAGCGAAAGCCATTTGTTGGGCCAAGGCCGATACTGTCCCCGGACGACATCCCGAGCGCTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGCAAGCGCTTCTGCAACTGCCAGGGATGCCTCTGCTTCGAGTATGATCACATAGTCCCCTTCTCAAAAGGTAAATTTGATTTGCTTCTCTTCGCCTCTAGCCGGTTAATGGTTTCTGAGTTCGATATGGGAAATTTCGCTGTTGCTGTTGCGTTTCCGTTGTGGATTGCAGTAAATTTATGGCTTAGCTTTGGTTGTCATGAAATTCGCAGGCGGCGAATCCACGGCGGATAATTGCCAGATTCTTCAGACGAGAGTAAACAGATTCAAATCGGATAAAGACGATGTTGATACGTCTCAGTTGAAAGGCTATTCATGTGATGTCAAGTTCACTGGTACTTTTTCATTCTGCCCCAATTCCCTGTCTATTTCAGTCCATGCTCTTCTGTTTAGTCTTGTAACACTTGTTAGGGTTCGAGACTAAATAATCGAACTTGTATATGATGTCTGAATTTCCATATCTTAAATATCCTGTTGCTAGTTCTTGAGCTACTCATACCAAGTTGCACGAAATCAAACTTGTGAAATCTCACTGTTATAGATCGTACATCCAGATTAAACAATTTAGGTTTCCATAAACTATCCCTTTGTACTATTCCAAGGTAAGAGCTTATCAAATTCATGCTTGTTAAAGCGACAAGTGAAACATTGGTTTAGAATGGCTATTTAATTCACCTTTCTGTTGGTTTGTTCTTGAATTCTCTCCCGTTCGAATGTAGCTACTAGCATCAATTTACTTTTCTCCTAGCTGCCCCACATATATAGCTATATAATTTTATAAGCTTTTACGGAATCATATGGTCGCTCAAAATTTGTTATCTCTATAAAGGCTATAATTTTATCTGCTTTTACGGAATCATATGGTCGCTCAAAATTTGTAATTTCTATATTGATTGGTTGTTTTGCTTTCCTCATCTTTTGACGGTACTTCGTGGCTTTTGGGGGGAAGTGATCCGGAAACATCATTAATTTTCAGGAAAGTGCTAGAAAGTGAAGTTTCAATTGCTTTAGCAATTCTATATGCTGTCCTGTTTCATATTAGCTATCATTGCTGGTGGTAGTTTATGATTCAAACAAAAGAATGCTTGTACTTTTGGTCATTTGAAACACAAATGAAGAACCTACATAGATTGCATTCCCCTTGTTGGGGTTATGAATTCAAATCATGCTGTGCACCCACCCAGAATATGAAATATCTTATGAACTTTTTGTAGAGATATTCATTGCTGTGCATATGTGGAATAGAGCAGGTTCTATGAATCTTGATCAGTACCTAAAGCTGAAATAATGCATTCTGGGGAGGAATTCTTTGAGGACCACATGGATTACCTCTTAGTTCATTGTCCCTTTCCATATTCAACTTGGGAACTTGGTTTCAATAAGACTAACATTCATGCACATCTCGAATAACCTTATACAGCACTCTCTTGACTTACTACTAGGATGTCCCATGGTGATTAAGATTTTAGACTATATTAGAATAATTGATAATACTCCATCCTTCACCTTCTCCATCATTGAGTGTTTTTTTTCCCTTCTCTCTCTTACATCCTTATATGATATAGTTGGACTGCATGTTTTGTTGCAGATAAGGAGCTTGACATAATTGAAATGGCTGTTTATGGAGATGTAATCAGGCCAGGAAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTCGGCCAATATAAATCCAAAGACCGCTTGGCCCCTTGCAAGTTGCCATATAATGAAGATTCTTCGTAACAAAAAGAAGGCTTGAACCTAAAGCATGTTTTTGCCCCATTTGGTATTAAGATCTATAATTTAATACACTTGCTACAAATAATGTTGGGGACCTCCATTACTTGATTAGATCAATGTGAATGAATATCACACCCATCTCAGTTTAAGAAATTGTTAAATTTTGAGTGTTTAGAAGTCTTTAAATCAACTAGATTACAATATATTTGATTTTTGTGCTCTCCATTCTGGTCCATAAATTCTTAAATTGTTTATGTTAGTACTTAAATTGTATTAATGTTTTGATATAGCCCTTAAACTTCG

mRNA sequence

ATGTCCGATCCGCCGGACGGCGTCGAAACTCCCATGGAAGCTACTTCCAGCTCGCCGTCACCGACTCGTTCCCGCGGCGGACCTAGACAGAGTGGCTCCGGAAATGGGAACGAACGGCCTAGATTTTTCGACACAAAAGCGAAAGCCATTTGTTGGGCCAAGGCCGATACTGTCCCCGGACGACATCCCGAGCGCTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGCAAGCGCTTCTGCAACTGCCAGGGATGCCTCTGCTTCGAGTATGATCACATAGTCCCCTTCTCAAAAGGCGGCGAATCCACGGCGGATAATTGCCAGATTCTTCAGACGAGAGTAAACAGATTCAAATCGGATAAAGACGATGTTGATACGTCTCAGTTGAAAGGCTATTCATGTGATGTCAAGTTCACTGATAAGGAGCTTGACATAATTGAAATGGCTGTTTATGGAGATGTAATCAGGCCAGGAAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTCGGCCAATATAAATCCAAAGACCGCTTGGCCCCTTGCAAGTTGCCATATAATGAAGATTCTTCGTAACAAAAAGAAGGCTTGAACCTAAAGCATGTTTTTGCCCCATTTGGTATTAAGATCTATAATTTAATACACTTGCTACAAATAATGTTGGGGACCTCCATTACTTGATTAGATCAATGTGAATGAATATCACACCCATCTCAGTTTAAGAAATTGTTAAATTTTGAGTGTTTAGAAGTCTTTAAATCAACTAGATTACAATATATTTGATTTTTGTGCTCTCCATTCTGGTCCATAAATTCTTAAATTGTTTATGTTAGTACTTAAATTGTATTAATGTTTTGATATAGCCCTTAAACTTCG

Coding sequence (CDS)

ATGTCCGATCCGCCGGACGGCGTCGAAACTCCCATGGAAGCTACTTCCAGCTCGCCGTCACCGACTCGTTCCCGCGGCGGACCTAGACAGAGTGGCTCCGGAAATGGGAACGAACGGCCTAGATTTTTCGACACAAAAGCGAAAGCCATTTGTTGGGCCAAGGCCGATACTGTCCCCGGACGACATCCCGAGCGCTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGCAAGCGCTTCTGCAACTGCCAGGGATGCCTCTGCTTCGAGTATGATCACATAGTCCCCTTCTCAAAAGGCGGCGAATCCACGGCGGATAATTGCCAGATTCTTCAGACGAGAGTAAACAGATTCAAATCGGATAAAGACGATGTTGATACGTCTCAGTTGAAAGGCTATTCATGTGATGTCAAGTTCACTGATAAGGAGCTTGACATAATTGAAATGGCTGTTTATGGAGATGTAATCAGGCCAGGAAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTCGGCCAATATAAATCCAAAGACCGCTTGGCCCCTTGCAAGTTGCCATATAATGAAGATTCTTCGTAA

Protein sequence

MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS

Homology

[Close]

BLAST of CmoCh11G001900 vs. ExPASy TrEMBL
Match: A0A6J1I7G1 (uncharacterized protein LOC111471509 OS=Cucurbita maxima OX=3661 GN=LOC111471509 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.0e-109
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPG 60
           MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPG
Sbjct: 1   MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPG 60

Query: 61  RHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSD 120
           RHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSD
Sbjct: 61  RHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSD 120

Query: 121 KDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLA 180
           KDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLA
Sbjct: 121 KDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLA 180

Query: 181 PCKLPYNEDSS 192
           PCKLPYNEDSS
Sbjct: 181 PCKLPYNEDSS 191

[Close]

BLAST of CmoCh11G001900 vs. ExPASy TrEMBL
Match: A0A6J1EZW3 (uncharacterized protein LOC111441065 OS=Cucurbita moschata OX=3662 GN=LOC111441065 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.0e-109
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPG 60
           MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPG
Sbjct: 1   MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPG 60

Query: 61  RHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSD 120
           RHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSD
Sbjct: 61  RHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSD 120

Query: 121 KDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLA 180
           KDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLA
Sbjct: 121 KDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLA 180

Query: 181 PCKLPYNEDSS 192
           PCKLPYNEDSS
Sbjct: 181 PCKLPYNEDSS 191

[Close]

BLAST of CmoCh11G001900 vs. ExPASy TrEMBL
Match: A0A0A0LUK3 (HNHc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G011480 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.2e-98
Identity = 172/186 (92.47%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 6   DGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPER 65
           DGV TPMEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKA CWAKAD VPGRHPER
Sbjct: 24  DGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPER 83

Query: 66  WRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVD 125
           WRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKS+KDDVD
Sbjct: 84  WRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVD 143

Query: 126 TSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP 185
           TS+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLP
Sbjct: 144 TSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLP 203

Query: 186 YNEDSS 192
           YNE+ S
Sbjct: 204 YNEEGS 209

[Close]

BLAST of CmoCh11G001900 vs. ExPASy TrEMBL
Match: A0A5A7UWI1 (HNH endonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002690 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.5e-97
Identity = 169/179 (94.41%), Postives = 174/179 (97.21%), Query Frame = 0


Query: 12  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAA 71
           MEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKA CWAKAD VPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 72  GNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKG 131
           GNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKS+KDDVDTS+LKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 132 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS 191
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
Sbjct: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS 179

[Close]

BLAST of CmoCh11G001900 vs. ExPASy TrEMBL
Match: A0A1S3BVP6 (uncharacterized protein LOC103494011 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494011 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.5e-97
Identity = 169/179 (94.41%), Postives = 174/179 (97.21%), Query Frame = 0


Query: 12  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAA 71
           MEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKA CWAKAD VPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 72  GNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKG 131
           GNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKS+KDDVDTS+LKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 132 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS 191
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
Sbjct: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS 179

[Close]

BLAST of CmoCh11G001900 vs. NCBI nr
Match: XP_022933741.1 (uncharacterized protein LOC111441065 [Cucurbita moschata] >XP_022972986.1 uncharacterized protein LOC111471509 [Cucurbita maxima])

HSP 1 Score: 404.8 bits (1039), Expect = 4.0e-109
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPG 60
           MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPG
Sbjct: 1   MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPG 60

Query: 61  RHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSD 120
           RHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSD
Sbjct: 61  RHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSD 120

Query: 121 KDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLA 180
           KDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLA
Sbjct: 121 KDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLA 180

Query: 181 PCKLPYNEDSS 192
           PCKLPYNEDSS
Sbjct: 181 PCKLPYNEDSS 191

[Close]

BLAST of CmoCh11G001900 vs. NCBI nr
Match: XP_023531696.1 (uncharacterized protein LOC111793864 [Cucurbita pepo subsp. pepo] >KAG6587563.1 hypothetical protein SDJN03_16128, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 401.7 bits (1031), Expect = 3.4e-108
Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 1   MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPG 60
           MSDP DGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPG
Sbjct: 1   MSDPSDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPG 60

Query: 61  RHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSD 120
           RHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSD
Sbjct: 61  RHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSD 120

Query: 121 KDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLA 180
           KDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLA
Sbjct: 121 KDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLA 180

Query: 181 PCKLPYNEDSS 192
           PCKLPYNEDSS
Sbjct: 181 PCKLPYNEDSS 191

[Close]

BLAST of CmoCh11G001900 vs. NCBI nr
Match: XP_008453224.1 (PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo] >KAA0057965.1 HNH endonuclease [Cucumis melo var. makuwa])

HSP 1 Score: 362.8 bits (930), Expect = 1.8e-96
Identity = 169/179 (94.41%), Postives = 174/179 (97.21%), Query Frame = 0


Query: 12  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAA 71
           MEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKA CWAKAD VPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 72  GNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKG 131
           GNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKS+KDDVDTS+LKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 132 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS 191
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
Sbjct: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS 179

[Close]

BLAST of CmoCh11G001900 vs. NCBI nr
Match: XP_004138181.1 (uncharacterized protein LOC101204599 [Cucumis sativus] >KAE8652425.1 hypothetical protein Csa_014117 [Cucumis sativus])

HSP 1 Score: 359.8 bits (922), Expect = 1.5e-95
Identity = 167/180 (92.78%), Postives = 174/180 (96.67%), Query Frame = 0


Query: 12  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAA 71
           MEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKA CWAKAD VPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 72  GNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKG 131
           GNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKS+KDDVDTS+LKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 132 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS 191
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYNE+ S
Sbjct: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEEGS 180

[Close]

BLAST of CmoCh11G001900 vs. NCBI nr
Match: XP_038878253.1 (uncharacterized protein LOC120070538 [Benincasa hispida])

HSP 1 Score: 359.8 bits (922), Expect = 1.5e-95
Identity = 166/179 (92.74%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 12  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAA 71
           MEATSSSPSPTRSRGG R SGSG+G+ERPRFFDTKAKAICW KAD VPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDTKAKAICWDKADVVPGRHPERWRKDAA 60

Query: 72  GNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKG 131
           GNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKS+++DVDTS+LKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNRNDVDTSELKG 120

Query: 132 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS 191
           YSCD+KFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYK+KDRLAPCKLPYNEDS
Sbjct: 121 YSCDIKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKAKDRLAPCKLPYNEDS 179

[Close]

BLAST of CmoCh11G001900 vs. TAIR 10
Match: AT1G18680.1 (HNH endonuclease domain-containing protein )

HSP 1 Score: 259.6 bits (662), Expect = 2.0e-69
Identity = 119/176 (67.61%), Postives = 139/176 (78.98%), Query Frame = 0


Query: 10  TPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKD 69
           T     ++ P P+      R +   NG ERPRFFD KAK  CWA AD VPGRHPERWRKD
Sbjct: 10  TNSTTAAAVPPPSPPSSPSRSNVKSNGEERPRFFDGKAKNKCWANADIVPGRHPERWRKD 69

Query: 70  AAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQL 129
            AGN+VCKRF NC GCLCFEYDHIVP+SKGGES A+NCQILQTRVNRFKS +++VD + L
Sbjct: 70  VAGNIVCKRFGNCNGCLCFEYDHIVPYSKGGESIAENCQILQTRVNRFKSAQENVDATTL 129

Query: 130 KGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP 186
           K YSC ++FTDKELD+IEMAVYGDV+RPG +CRC+TV+E+LGQ KSKD  A C+LP
Sbjct: 130 KSYSCGLQFTDKELDVIEMAVYGDVLRPGKECRCKTVAELLGQSKSKDGKAACELP 185

[Close]

BLAST of CmoCh11G001900 vs. TAIR 10
Match: AT3G47490.1 (HNH endonuclease )

HSP 1 Score: 144.4 bits (363), Expect = 9.2e-35
Identity = 63/134 (47.01%), Postives = 86/134 (64.18%), Query Frame = 0


Query: 31  SGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEY 90
           SG G+ N  PR F    K  CW KA+ + GR PERWR+D  GN+V ++   C GCLC +Y
Sbjct: 99  SGYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDY 158

Query: 91  DHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAV 150
           DHIVP+SKGG+ST +NCQ+LQ +VNR K +K D+  S+L   S   +   +++D+IE+  
Sbjct: 159 DHIVPYSKGGKSTLENCQVLQAKVNRSKGNKTDISRSELIQRSSYCRVAGRDMDLIELTA 218

Query: 151 YGDVIRPGNQCRCR 165
           YG+V R      CR
Sbjct: 219 YGNVQRAPTSSGCR 232

[Close]

BLAST of CmoCh11G001900 vs. TAIR 10
Match: AT3G47490.3 (HNH endonuclease )

HSP 1 Score: 132.5 bits (332), Expect = 3.6e-31
Identity = 63/154 (40.91%), Postives = 86/154 (55.84%), Query Frame = 0


Query: 31  SGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEY 90
           SG G+ N  PR F    K  CW KA+ + GR PERWR+D  GN+V ++   C GCLC +Y
Sbjct: 60  SGYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDY 119

Query: 91  DHIVPFS--------------------KGGESTADNCQILQTRVNRFKSDKDDVDTSQLK 150
           DHIVP+S                    KGG+ST +NCQ+LQ +VNR K +K D+  S+L 
Sbjct: 120 DHIVPYSKDMCPLEHAFDEPHKDFLDLKGGKSTLENCQVLQAKVNRSKGNKTDISRSELI 179

Query: 151 GYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR 165
             S   +   +++D+IE+  YG+V R      CR
Sbjct: 180 QRSSYCRVAGRDMDLIELTAYGNVQRAPTSSGCR 213

[Close]

BLAST of CmoCh11G001900 vs. TAIR 10
Match: AT3G47490.2 (HNH endonuclease )

HSP 1 Score: 89.0 bits (219), Expect = 4.6e-18
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 31  SGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEY 90
           SG G+ N  PR F    K  CW KA+ + GR PERWR+D  GN+V ++   C GCLC +Y
Sbjct: 99  SGYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDY 158

Query: 91  DHIVPFSK 99
           DHIVP+SK
Sbjct: 159 DHIVPYSK 166

The following BLAST results are available for this feature:

BLAST of CmoCh11G001900 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G001900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I7G1	2.0e-109	100.00	uncharacterized protein LOC111471509 OS=Cucurbita maxima OX=3661 GN=LOC111471509...	[more]
A0A6J1EZW3	2.0e-109	100.00	uncharacterized protein LOC111441065 OS=Cucurbita moschata OX=3662 GN=LOC1114410...	[more]
A0A0A0LUK3	1.2e-98	92.47	HNHc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G011480 PE=4 S...	[more]
A0A5A7UWI1	8.5e-97	94.41	HNH endonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002...	[more]
A0A1S3BVP6	8.5e-97	94.41	uncharacterized protein LOC103494011 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CmoCh11G001900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933741.1	4.0e-109	100.00	uncharacterized protein LOC111441065 [Cucurbita moschata] >XP_022972986.1 unchar...	[more]
XP_023531696.1	3.4e-108	99.48	uncharacterized protein LOC111793864 [Cucurbita pepo subsp. pepo] >KAG6587563.1 ...	[more]
XP_008453224.1	1.8e-96	94.41	PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo] >KAA00...	[more]
XP_004138181.1	1.5e-95	92.78	uncharacterized protein LOC101204599 [Cucumis sativus] >KAE8652425.1 hypothetica...	[more]
XP_038878253.1	1.5e-95	92.74	uncharacterized protein LOC120070538 [Benincasa hispida]	[more]

BLAST of CmoCh11G001900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18680.1	2.0e-69	67.61	HNH endonuclease domain-containing protein	[more]
AT3G47490.1	9.2e-35	47.01	HNH endonuclease	[more]
AT3G47490.3	3.6e-31	40.91	HNH endonuclease	[more]
AT3G47490.2	4.6e-18	52.94	HNH endonuclease	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.30.50		coord: 53..139 e-value: 4.3E-9 score: 37.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	PANTHER	PTHR33427	HNH ENDONUCLEASE	coord: 29..189
None	No IPR available	PANTHER	PTHR33427:SF1	F6A14.21 PROTEIN	coord: 29..189
IPR002711	HNH endonuclease	PFAM	PF01844	HNH	coord: 76..110 e-value: 8.5E-5 score: 22.6
IPR003615	HNH nuclease	CDD	cd00085	HNHc	coord: 77..116 e-value: 6.73805E-6 score: 40.1476

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G001900.1	CmoCh11G001900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding