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CmoCh11G001900 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCGATCCGCCGGACGGCGTCGAAACTCCCATGGAAGCTACTTCCAGCTCGCCGTCACCGACTCGTTCCCGCGGCGGACCTAGACAGAGTGGCTCCGGAAATGGGAACGAACGGCCTAGATTTTTCGACACAAAAGCGAAAGCCATTTGTTGGGCCAAGGCCGATACTGTCCCCGGACGACATCCCGAGCGCTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGCAAGCGCTTCTGCAACTGCCAGGGATGCCTCTGCTTCGAGTATGATCACATAGTCCCCTTCTCAAAAGGTAAATTTGATTTGCTTCTCTTCGCCTCTAGCCGGTTAATGGTTTCTGAGTTCGATATGGGAAATTTCGCTGTTGCTGTTGCGTTTCCGTTGTGGATTGCAGTAAATTTATGGCTTAGCTTTGGTTGTCATGAAATTCGCAGGCGGCGAATCCACGGCGGATAATTGCCAGATTCTTCAGACGAGAGTAAACAGATTCAAATCGGATAAAGACGATGTTGATACGTCTCAGTTGAAAGGCTATTCATGTGATGTCAAGTTCACTGGTACTTTTTCATTCTGCCCCAATTCCCTGTCTATTTCAGTCCATGCTCTTCTGTTTAGTCTTGTAACACTTGTTAGGGTTCGAGACTAAATAATCGAACTTGTATATGATGTCTGAATTTCCATATCTTAAATATCCTGTTGCTAGTTCTTGAGCTACTCATACCAAGTTGCACGAAATCAAACTTGTGAAATCTCACTGTTATAGATCGTACATCCAGATTAAACAATTTAGGTTTCCATAAACTATCCCTTTGTACTATTCCAAGGTAAGAGCTTATCAAATTCATGCTTGTTAAAGCGACAAGTGAAACATTGGTTTAGAATGGCTATTTAATTCACCTTTCTGTTGGTTTGTTCTTGAATTCTCTCCCGTTCGAATGTAGCTACTAGCATCAATTTACTTTTCTCCTAGCTGCCCCACATATATAGCTATATAATTTTATAAGCTTTTACGGAATCATATGGTCGCTCAAAATTTGTTATCTCTATAAAGGCTATAATTTTATCTGCTTTTACGGAATCATATGGTCGCTCAAAATTTGTAATTTCTATATTGATTGGTTGTTTTGCTTTCCTCATCTTTTGACGGTACTTCGTGGCTTTTGGGGGGAAGTGATCCGGAAACATCATTAATTTTCAGGAAAGTGCTAGAAAGTGAAGTTTCAATTGCTTTAGCAATTCTATATGCTGTCCTGTTTCATATTAGCTATCATTGCTGGTGGTAGTTTATGATTCAAACAAAAGAATGCTTGTACTTTTGGTCATTTGAAACACAAATGAAGAACCTACATAGATTGCATTCCCCTTGTTGGGGTTATGAATTCAAATCATGCTGTGCACCCACCCAGAATATGAAATATCTTATGAACTTTTTGTAGAGATATTCATTGCTGTGCATATGTGGAATAGAGCAGGTTCTATGAATCTTGATCAGTACCTAAAGCTGAAATAATGCATTCTGGGGAGGAATTCTTTGAGGACCACATGGATTACCTCTTAGTTCATTGTCCCTTTCCATATTCAACTTGGGAACTTGGTTTCAATAAGACTAACATTCATGCACATCTCGAATAACCTTATACAGCACTCTCTTGACTTACTACTAGGATGTCCCATGGTGATTAAGATTTTAGACTATATTAGAATAATTGATAATACTCCATCCTTCACCTTCTCCATCATTGAGTGTTTTTTTTCCCTTCTCTCTCTTACATCCTTATATGATATAGTTGGACTGCATGTTTTGTTGCAGATAAGGAGCTTGACATAATTGAAATGGCTGTTTATGGAGATGTAATCAGGCCAGGAAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTCGGCCAATATAAATCCAAAGACCGCTTGGCCCCTTGCAAGTTGCCATATAATGAAGATTCTTCGTAACAAAAAGAAGGCTTGAACCTAAAGCATGTTTTTGCCCCATTTGGTATTAAGATCTATAATTTAATACACTTGCTACAAATAATGTTGGGGACCTCCATTACTTGATTAGATCAATGTGAATGAATATCACACCCATCTCAGTTTAAGAAATTGTTAAATTTTGAGTGTTTAGAAGTCTTTAAATCAACTAGATTACAATATATTTGATTTTTGTGCTCTCCATTCTGGTCCATAAATTCTTAAATTGTTTATGTTAGTACTTAAATTGTATTAATGTTTTGATATAGCCCTTAAACTTCG ATGTCCGATCCGCCGGACGGCGTCGAAACTCCCATGGAAGCTACTTCCAGCTCGCCGTCACCGACTCGTTCCCGCGGCGGACCTAGACAGAGTGGCTCCGGAAATGGGAACGAACGGCCTAGATTTTTCGACACAAAAGCGAAAGCCATTTGTTGGGCCAAGGCCGATACTGTCCCCGGACGACATCCCGAGCGCTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGCAAGCGCTTCTGCAACTGCCAGGGATGCCTCTGCTTCGAGTATGATCACATAGTCCCCTTCTCAAAAGGCGGCGAATCCACGGCGGATAATTGCCAGATTCTTCAGACGAGAGTAAACAGATTCAAATCGGATAAAGACGATGTTGATACGTCTCAGTTGAAAGGCTATTCATGTGATGTCAAGTTCACTGATAAGGAGCTTGACATAATTGAAATGGCTGTTTATGGAGATGTAATCAGGCCAGGAAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTCGGCCAATATAAATCCAAAGACCGCTTGGCCCCTTGCAAGTTGCCATATAATGAAGATTCTTCGTAACAAAAAGAAGGCTTGAACCTAAAGCATGTTTTTGCCCCATTTGGTATTAAGATCTATAATTTAATACACTTGCTACAAATAATGTTGGGGACCTCCATTACTTGATTAGATCAATGTGAATGAATATCACACCCATCTCAGTTTAAGAAATTGTTAAATTTTGAGTGTTTAGAAGTCTTTAAATCAACTAGATTACAATATATTTGATTTTTGTGCTCTCCATTCTGGTCCATAAATTCTTAAATTGTTTATGTTAGTACTTAAATTGTATTAATGTTTTGATATAGCCCTTAAACTTCG ATGTCCGATCCGCCGGACGGCGTCGAAACTCCCATGGAAGCTACTTCCAGCTCGCCGTCACCGACTCGTTCCCGCGGCGGACCTAGACAGAGTGGCTCCGGAAATGGGAACGAACGGCCTAGATTTTTCGACACAAAAGCGAAAGCCATTTGTTGGGCCAAGGCCGATACTGTCCCCGGACGACATCCCGAGCGCTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGCAAGCGCTTCTGCAACTGCCAGGGATGCCTCTGCTTCGAGTATGATCACATAGTCCCCTTCTCAAAAGGCGGCGAATCCACGGCGGATAATTGCCAGATTCTTCAGACGAGAGTAAACAGATTCAAATCGGATAAAGACGATGTTGATACGTCTCAGTTGAAAGGCTATTCATGTGATGTCAAGTTCACTGATAAGGAGCTTGACATAATTGAAATGGCTGTTTATGGAGATGTAATCAGGCCAGGAAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTCGGCCAATATAAATCCAAAGACCGCTTGGCCCCTTGCAAGTTGCCATATAATGAAGATTCTTCGTAA MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS Homology
BLAST of CmoCh11G001900 vs. ExPASy TrEMBL
Match: A0A6J1I7G1 (uncharacterized protein LOC111471509 OS=Cucurbita maxima OX=3661 GN=LOC111471509 PE=4 SV=1) HSP 1 Score: 404.8 bits (1039), Expect = 2.0e-109 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
BLAST of CmoCh11G001900 vs. ExPASy TrEMBL
Match: A0A6J1EZW3 (uncharacterized protein LOC111441065 OS=Cucurbita moschata OX=3662 GN=LOC111441065 PE=4 SV=1) HSP 1 Score: 404.8 bits (1039), Expect = 2.0e-109 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
BLAST of CmoCh11G001900 vs. ExPASy TrEMBL
Match: A0A0A0LUK3 (HNHc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G011480 PE=4 SV=1) HSP 1 Score: 369.0 bits (946), Expect = 1.2e-98 Identity = 172/186 (92.47%), Postives = 179/186 (96.24%), Query Frame = 0
BLAST of CmoCh11G001900 vs. ExPASy TrEMBL
Match: A0A5A7UWI1 (HNH endonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002690 PE=4 SV=1) HSP 1 Score: 362.8 bits (930), Expect = 8.5e-97 Identity = 169/179 (94.41%), Postives = 174/179 (97.21%), Query Frame = 0
BLAST of CmoCh11G001900 vs. ExPASy TrEMBL
Match: A0A1S3BVP6 (uncharacterized protein LOC103494011 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494011 PE=4 SV=1) HSP 1 Score: 362.8 bits (930), Expect = 8.5e-97 Identity = 169/179 (94.41%), Postives = 174/179 (97.21%), Query Frame = 0
BLAST of CmoCh11G001900 vs. NCBI nr
Match: XP_022933741.1 (uncharacterized protein LOC111441065 [Cucurbita moschata] >XP_022972986.1 uncharacterized protein LOC111471509 [Cucurbita maxima]) HSP 1 Score: 404.8 bits (1039), Expect = 4.0e-109 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
BLAST of CmoCh11G001900 vs. NCBI nr
Match: XP_023531696.1 (uncharacterized protein LOC111793864 [Cucurbita pepo subsp. pepo] >KAG6587563.1 hypothetical protein SDJN03_16128, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 401.7 bits (1031), Expect = 3.4e-108 Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 0
BLAST of CmoCh11G001900 vs. NCBI nr
Match: XP_008453224.1 (PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo] >KAA0057965.1 HNH endonuclease [Cucumis melo var. makuwa]) HSP 1 Score: 362.8 bits (930), Expect = 1.8e-96 Identity = 169/179 (94.41%), Postives = 174/179 (97.21%), Query Frame = 0
BLAST of CmoCh11G001900 vs. NCBI nr
Match: XP_004138181.1 (uncharacterized protein LOC101204599 [Cucumis sativus] >KAE8652425.1 hypothetical protein Csa_014117 [Cucumis sativus]) HSP 1 Score: 359.8 bits (922), Expect = 1.5e-95 Identity = 167/180 (92.78%), Postives = 174/180 (96.67%), Query Frame = 0
BLAST of CmoCh11G001900 vs. NCBI nr
Match: XP_038878253.1 (uncharacterized protein LOC120070538 [Benincasa hispida]) HSP 1 Score: 359.8 bits (922), Expect = 1.5e-95 Identity = 166/179 (92.74%), Postives = 175/179 (97.77%), Query Frame = 0
BLAST of CmoCh11G001900 vs. TAIR 10
Match: AT1G18680.1 (HNH endonuclease domain-containing protein ) HSP 1 Score: 259.6 bits (662), Expect = 2.0e-69 Identity = 119/176 (67.61%), Postives = 139/176 (78.98%), Query Frame = 0
BLAST of CmoCh11G001900 vs. TAIR 10
Match: AT3G47490.1 (HNH endonuclease ) HSP 1 Score: 144.4 bits (363), Expect = 9.2e-35 Identity = 63/134 (47.01%), Postives = 86/134 (64.18%), Query Frame = 0
BLAST of CmoCh11G001900 vs. TAIR 10
Match: AT3G47490.3 (HNH endonuclease ) HSP 1 Score: 132.5 bits (332), Expect = 3.6e-31 Identity = 63/154 (40.91%), Postives = 86/154 (55.84%), Query Frame = 0
BLAST of CmoCh11G001900 vs. TAIR 10
Match: AT3G47490.2 (HNH endonuclease ) HSP 1 Score: 89.0 bits (219), Expect = 4.6e-18 Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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