CmoCh11G001880 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G001880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Formin-like protein
Location	Cmo_Chr11: 920830 .. 923640 (-)
RNA-Seq Expression	CmoCh11G001880
Synteny	CmoCh11G001880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTCCCACTTGGAGTGGGAGAGTTTTACATTGGTGCTTGGTATAGGTGCAACTTAAAGAGTTGTACCACGTAAATCAGTAGAAAAGTTAACTCAAACCAAATTGAAATAGTAGTTCAAAATTTAGTATGACGAGCTTCAGTTCCTATACCTCCTCATATTTCAAAGTATCAGAAAATTCATTGAGTTTAGAAAATCACCACTTTGTCGAATGCGGAACAGAAATAAAAAGTTTCTTTCTTAAAAATTTATTAACCATCATAGCTTGATGTACAACTCTAATTCTTGGCAGACATCATAAATTCTGAATCTCATCTTTGGAGAACAACGTGATTTTTGCTAATTAAGTAGTACTTGGAACCTCCAAACGCTGAATGACCTTAAGAAATAAAGTGACCTGTGAAATTTTCCAGTATCAGATTTAAGCAATTGTAACATCAATTTTTTGAAGGTTTCTTTTCAGATTCTGCATTCCTTAATGAAATTTGTTTTATTATGTTCTAATATATCCTTTGAATGGCATTCAAAAATTGTAATTTAGTTTGGGATAGAGGTTTTTTTTTTAATTAACGTACTTTTCAGAAGCTGCCATGTGTTCTATTGGATGTGCTGTATAACGAGAAGAAAACAAGCATTAATTTCTTTTTTTTATGTTTCATTGACTCAGTGAATAAGTTAGCTTAGCTGTGTATTATTGTTAAGATCATGGTTATATGAGTCTTTAGCCAATACAATTTACACAAATTCTCCCTCAAAACTCTTGTACGATGTTAGATTGCATAGTCTCAAAGCATAGAGTTGCATAGGATTTCTTGGGTTGTTTGGTTTTTTCATTCAAATAAGACTAAGATCTACAATTTGATTTACCACTTTGGTGTGTTGGACCGCCCTTTTCAAGAAGAGCTCTCCCACTTTGGAAAGTGTGCCATTTTTGCAAGTCCTTGTATGTTTTGAATTGAGAACTTTGGGTTGAAAAAAAGAACATAAGATCATTACGTCTTTTATAAAGTGTTTAGAGTTCTTCTGTTGGTTGTATATGCGGATGGCATTCTTATTACTATTGTTATTACTAGAGCTATGCTTAAGCTTTTAGGGGTCCTATATATCATAGTTAATCTCATTCAAAGGACTTTGGATGTTGAATTAGTTTTTTTTTGGGTTATATTTGGCCATAGAGGTGGTAGGAGTGGGAAAGGGATTCTTTTAGTACAAGGAAGTTTAGAGCACTCCAATTAAGCTTAATGTAGTTCACAAAAGAGGACAATTTATTTTTGGATATTGAGGAATTCTGGAAAGCCAAACTATCTCGTCCAGAAGTTGCTTATTCAAATAACATTATTTCAATACAAGATATCACAAATTCCAGCTTGAAAGCTAGATCTTGACATGGAATCTTAAAGTTCATGTTATTGCTCCTTAGATGTTGATTGGGTATTGTTCGTAGGTCAACTTTGTATTGAATTTTTGTTTAGGGTAATTTAGTATAGTAGAAAAGTAAGAAGTAAAATGTTCTCTCACGTGTGGGTGCAAAATCAGAATAAAGAGCTATGACACAATTTGTGTGTGAAGTTACAAAATCAGAATAAAGAGCTATGACACAATTTGTGTGTGAAGTTACAAAATCAGAATAAAGAGCTATGACACAATTTGTGTGTGAAGTTACAAAATCAGAATAAAGAGCTACAACACAATTTGTGTGTGAAGTTATGTTGATACACTAACTTTAGCCTGGGTTAGATTTCAATATCACAATTTAGTCAAACTACAGAGTGATAAGTGAGCTTTTTTTCTAATTGCCTCCAATATGATATTTCATGAGCGAATCGTGTTTATTGTCATTATGTTAAACCACAAGATATATGAAACTGAAAAAATAGGTTTAAGATGTTGCTACCAAGTCTCTAAATAAAGCATGAATTGAATTTCTTGTCGTAATTTGTGGCATGATTAACATATATACTCCAGCATAAGGGGAATTTATTAGTTGAATTTTAAATACCATGGTTATAGGTTTTGTCACTTAGTATAGTGTCTTTATTGTGTTTTAACACTTTTTTAGGAGAAGGGTCCCATATGTTTGGGGTTATATTATACAGTATTTAGTGAATGAGCTTTCTCCCATTTTACTTGCTGTTAGTTTACATTGTATAGTTGGTGGATCACTATTTCATCCAAGTTCATCTACTTTTTTCATAATGGACTTTTTGTTCACAGATGTCAACATAACAATCCCGTCCTCATTGATAGAAATGGACTTGGAAAAGGTTTACTTATTTACGATGGATGCCTACATGGATCACTGGAAAGAAATAACGTTAATAGACTTAATATCTGCTGAATCATATTTCTCACCGTTGGTGGTTGAACCCTTATACTGCTAGATATTTTTTGTCTGGGGGTTGAAATTAAAATTTTGAATACATTTATATTTTTTGTAGATTGACCTCAGAAGAGCTAACAACACTGAAATTATGCTCACCAAAGTAAAGATGCCACTTCCTGATATGATGGTAAGATGATCGGACCAACTTTTTATTTTTAACTCACCTATGCATCAACTGAAACCATCCTTTACTCTTGTTACTAGGTATTCATGGTATGTTTGAAACCATCTACACAAAGGCGTTGAATATTGTACATACTTAATACCTTAATTTCGTTCTATAAACATGATGACTAACGTTTCTTTTCACTTTTCATGAGTCTAGCACATGTAGAAATTATTGCGACTTTTTTCATAATTGTTTTTCATGTCACACATTGACCTTTTACAACCAATATTAGATAATTTTGTCCAATTTTCTAGGA

mRNA sequence

ATGCAATTCCCACTTGGAGTGGGAGAGTTTTACATTGGTGCTTGGTATAGGTGCAACTTAAAGAGTTGTACCACAGGTGGTAGGAGTGGGAAAGGGATTCTTTTAGTACAAGGAAATGTTGATTGGGTATTGTTCGTAGGTCAACTTTATGTCAACATAACAATCCCGTCCTCATTGATAGAAATGGACTTGGAAAAGATTGACCTCAGAAGAGCTAACAACACTGAAATTATGCTCACCAAAGTAAAGATGCCACTTCCTGATATGATGGTATTCATGGTATGA

Coding sequence (CDS)

ATGCAATTCCCACTTGGAGTGGGAGAGTTTTACATTGGTGCTTGGTATAGGTGCAACTTAAAGAGTTGTACCACAGGTGGTAGGAGTGGGAAAGGGATTCTTTTAGTACAAGGAAATGTTGATTGGGTATTGTTCGTAGGTCAACTTTATGTCAACATAACAATCCCGTCCTCATTGATAGAAATGGACTTGGAAAAGATTGACCTCAGAAGAGCTAACAACACTGAAATTATGCTCACCAAAGTAAAGATGCCACTTCCTGATATGATGGTATTCATGGTATGA

Protein sequence

MQFPLGVGEFYIGAWYRCNLKSCTTGGRSGKGILLVQGNVDWVLFVGQLYVNITIPSSLIEMDLEKIDLRRANNTEIMLTKVKMPLPDMMVFMV

Homology

[Close]

BLAST of CmoCh11G001880 vs. ExPASy Swiss-Prot
Match: Q9FLQ7 (Formin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=FH20 PE=2 SV=3)

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-05
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 64   LEKIDLRRANNTEIMLTKVKMPLPDMM 91
            ++ IDLRRANNTEIMLTKVKMPLPDMM
Sbjct: 1313 VQLIDLRRANNTEIMLTKVKMPLPDMM 1339

[Close]

BLAST of CmoCh11G001880 vs. ExPASy Swiss-Prot
Match: Q7XWS7 (Formin-like protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=FH12 PE=3 SV=3)

HSP 1 Score: 49.3 bits (116), Expect = 2.8e-05
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 67   IDLRRANNTEIMLTKVKMPLPDMM 91
            IDLRRANNTEIMLTK+KMPLPDMM
Sbjct: 1327 IDLRRANNTEIMLTKIKMPLPDMM 1350

[Close]

BLAST of CmoCh11G001880 vs. ExPASy Swiss-Prot
Match: Q84ZL0 (Formin-like protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=FH5 PE=2 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 4.0e-04
Identity = 21/24 (87.50%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 67   IDLRRANNTEIMLTKVKMPLPDMM 91
            I+LRRANNTEIMLTKVKMPLPD++
Sbjct: 1269 IELRRANNTEIMLTKVKMPLPDLV 1292

[Close]

BLAST of CmoCh11G001880 vs. ExPASy Swiss-Prot
Match: Q7G6K7 (Formin-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=FH3 PE=2 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 8.9e-04
Identity = 19/24 (79.17%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 67  IDLRRANNTEIMLTKVKMPLPDMM 91
           +D+RRANN EIMLTK+KMPLPDM+
Sbjct: 907 VDMRRANNCEIMLTKIKMPLPDMI 930

[Close]

BLAST of CmoCh11G001880 vs. ExPASy TrEMBL
Match: A0A067EWY4 (Formin-like protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0011561mg PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-04
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 57 SSLIEMDLEKIDLRRANNTEIMLTKVKMPLPDMMV 92
          SSL  +   KIDLRRANNTEIMLTKVKMPLPDMMV
Sbjct: 47 SSLKPLHWSKIDLRRANNTEIMLTKVKMPLPDMMV 81

[Close]

BLAST of CmoCh11G001880 vs. ExPASy TrEMBL
Match: A0A2H5QR39 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_253840 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-04
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 57  SSLIEMDLEKIDLRRANNTEIMLTKVKMPLPDMMV 92
           SSL  +   KIDLRRANNTEIMLTKVKMPLPDMMV
Sbjct: 861 SSLKPLHWSKIDLRRANNTEIMLTKVKMPLPDMMV 895

[Close]

BLAST of CmoCh11G001880 vs. NCBI nr
Match: KDO55466.1 (hypothetical protein CISIN_1g0011561mg, partial [Citrus sinensis])

HSP 1 Score: 55.1 bits (131), Expect = 3.9e-04
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 57 SSLIEMDLEKIDLRRANNTEIMLTKVKMPLPDMMV 92
          SSL  +   KIDLRRANNTEIMLTKVKMPLPDMMV
Sbjct: 47 SSLKPLHWSKIDLRRANNTEIMLTKVKMPLPDMMV 81

[Close]

BLAST of CmoCh11G001880 vs. NCBI nr
Match: GAY67092.1 (hypothetical protein CUMW_253840 [Citrus unshiu])

HSP 1 Score: 55.1 bits (131), Expect = 3.9e-04
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 57  SSLIEMDLEKIDLRRANNTEIMLTKVKMPLPDMMV 92
           SSL  +   KIDLRRANNTEIMLTKVKMPLPDMMV
Sbjct: 861 SSLKPLHWSKIDLRRANNTEIMLTKVKMPLPDMMV 895

[Close]

BLAST of CmoCh11G001880 vs. TAIR 10
Match: AT5G07740.1 (actin binding )

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-06
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 64   LEKIDLRRANNTEIMLTKVKMPLPDMM 91
            ++ IDLRRANNTEIMLTKVKMPLPDMM
Sbjct: 1313 VQLIDLRRANNTEIMLTKVKMPLPDMM 1339

[Close]

BLAST of CmoCh11G001880 vs. TAIR 10
Match: AT1G31810.1 (Formin Homology 14 )

HSP 1 Score: 43.9 bits (102), Expect = 8.3e-05
Identity = 19/27 (70.37%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 64  LEKIDLRRANNTEIMLTKVKMPLPDMM 91
           ++ +DLRRANN EIMLTK+K+PLPDM+
Sbjct: 885 VQLVDLRRANNCEIMLTKIKIPLPDML 911

[Close]

BLAST of CmoCh11G001880 vs. TAIR 10
Match: AT5G07650.1 (Actin-binding FH2 protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04
Identity = 20/27 (74.07%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 64  LEKIDLRRANNTEIMLTKVKMPLPDMM 91
           +++IDLRRAN+TEIMLTKV +PL DMM
Sbjct: 467 MKQIDLRRANDTEIMLTKVNIPLADMM 493

The following BLAST results are available for this feature:

BLAST of CmoCh11G001880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLQ7	2.1e-05	88.89	Formin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=FH20 PE=2 SV=3	[more]
Q7XWS7	2.8e-05	95.83	Formin-like protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=FH12 PE=3 SV=...	[more]
Q84ZL0	4.0e-04	87.50	Formin-like protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=FH5 PE=2 SV=2	[more]
Q7G6K7	8.9e-04	79.17	Formin-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=FH3 PE=2 SV=2	[more]

BLAST of CmoCh11G001880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A067EWY4	1.9e-04	82.86	Formin-like protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0011561mg P...	[more]
A0A2H5QR39	1.9e-04	82.86	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_253840 PE=3 SV=1	[more]

BLAST of CmoCh11G001880 vs. NCBI nr


Match Name	E-value	Identity	Description
KDO55466.1	3.9e-04	82.86	hypothetical protein CISIN_1g0011561mg, partial [Citrus sinensis]	[more]
GAY67092.1	3.9e-04	82.86	hypothetical protein CUMW_253840 [Citrus unshiu]	[more]

BLAST of CmoCh11G001880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07740.1	1.5e-06	88.89	actin binding	[more]
AT1G31810.1	8.3e-05	70.37	Formin Homology 14	[more]
AT5G07650.1	2.4e-04	74.07	Actin-binding FH2 protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G001880.1	CmoCh11G001880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006470	protein dephosphorylation
molecular_function	GO:0004721	phosphoprotein phosphatase activity